LOCUS       NM_122647               3583 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana Tudor/PWWP/MBT superfamily protein
            (AT5G27650), mRNA.
ACCESSION   NM_122647
VERSION     NM_122647.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 3583)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 3583)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3583)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 3583)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
            
            On Sep 12, 2016 this sequence version replaced NM_122647.2.
FEATURES             Location/Qualifiers
     source          1..3583
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..3583
                     /locus_tag="AT5G27650"
                     /gene_synonym="T1G16.4"
                     /db_xref="Araport:AT5G27650"
                     /db_xref="GeneID:832827"
                     /db_xref="TAIR:AT5G27650"
     CDS             105..3323
                     /locus_tag="AT5G27650"
                     /gene_synonym="T1G16.4"
                     /inference="Similar to RNA sequence,
                     EST:INSD:ES090701.1,INSD:EL192220.1,INSD:AV524352.1,
                     INSD:EH908249.1,INSD:AU237277.1,INSD:EL040814.1,
                     INSD:ES079273.1,INSD:BP791665.1,INSD:EL323019.1,
                     INSD:EL235340.1,INSD:ES039614.1,INSD:EH978630.1,
                     INSD:ES141356.1,INSD:BP643201.1,INSD:ES205673.1,
                     INSD:EL287754.1,INSD:ES198297.1,INSD:ES142139.1,
                     INSD:EH826813.1,INSD:EH850099.1,INSD:ES087648.1,
                     INSD:EL288211.1,INSD:ES094573.1,INSD:T43514.1,
                     INSD:EL020437.1,INSD:EL172968.1,INSD:AV530259.1,
                     INSD:AU228314.1,INSD:AA728575.1,INSD:ES004639.1,
                     INSD:T04352.1"
                     /note="Tudor/PWWP/MBT superfamily protein; CONTAINS
                     InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST
                     Arabidopsis thaliana protein match is: Tudor/PWWP/MBT
                     superfamily protein (TAIR:AT3G05430.1); Has 6717 Blast
                     hits to 4764 proteins in 372 species: Archae - 18;
                     Bacteria - 431; Metazoa - 2974; Fungi - 702; Plants - 445;
                     Viruses - 136; Other Eukaryotes - 2011 (source: NCBI
                     BLink)."
                     /codon_start=1
                     /product="Tudor/PWWP/MBT superfamily protein"
                     /protein_id="NP_198117.2"
                     /db_xref="GeneID:832827"
                     /db_xref="TAIR:AT5G27650"
                     /db_xref="Araport:AT5G27650"
                     /translation="

MYKTKLIPVMNEDAVIVQQTDSIQDPKVTPDDTVVDSSGDVHEAIDDDVEASSPMELDSAVTNDARVLESERSEKDGVVGSEEEDEIKSEDVLIDKDDESSEVKEEEEEEDGSDDQSSELGSEADEKELDLGLKEEKKGVSDYKSLLSEFDDYVASEKMGSGVSRALSYGFEVGDLVWGKVKSHPWWPGHIFNEAFASPSVRRMRRIDHVLVAFFGDSSYGWFDPAELIPFEPNLEEKSQQTVSKHFVRAVEEAKDEASRRSALGLTCKCRNPYNFRPSNVEDYFAVDVPDYELQAVYSVDQIKNSRDKFLPAETISFVKQLALAPQECDPDSLKFMKKKAVVFAFRKSVFEEFDETYAQAFGTKSPRSSVSTLEPHNRAPPRAPLSGPLVIAETLGDLKSSKKPTKVKVSKKKDKYLLKRRDEAGDKSVQFGEIEASSEASHIQGIDGSLDGDFGLQRRAPTLQTPMKDEKSGIVSMDFASSNTAIPGKEFSASKPSLDEEKGLAEKSKERMEERAAVLPEHGKSEAMASLKPKEEAGTDLGSAGSSLQPLLESHTSASEGKSSTGSVIKKVKVAKRSSSEMSSENPPSEPKKKKKKKKEPDSDHPVKRKNLYSGEAGAKKLSQLGSAHLQTYMEADVPQLLSHLQDLSLDPFHGLSVASFGTARKFFLRFRSLNYQKSLSVSSSDATVENARDTKPSKPVKTVKRTEDPSKAGKKRLSSDRQDEIPSAKKLKKTNQLKSMASEKKIIREAKDSIKPIREPSRVVQAKPARGQTGKKTAPSVKVVEPTMLVMKFPPGTSLPSAALLKARFGRFGLLDQSAIRVFWKSSTCRVVFLYKADAQTAFRYATGNNTLFGNVNVKYFLRDVDAPKAEPREPENTKEDDEPQSQWLDQAPPLHQPTLPPPNVNLKSCLKKPVDDPSSSSNNGNGNRAAVRVKFMLGGEENSSKANTEPPQVTMTLNRNSGPSSSSSSVPMEFVSKKFQNVVHHQQLPPSTLPPILPLPPQYTKPQQLPIKPVDHVEPPMPPSRNFRGPIPAVSAGDISHQMLNLLSKCNEVVANVTGLLGYVPYHPL"

     misc_feature    624..875
                     /locus_tag="AT5G27650"
                     /gene_synonym="T1G16.4"
                     /note="PWWP (Pro-Trp-Trp-Pro) domain; Region: PWWP;
                     cd05162"
                     /db_xref="CDD:438958"
     misc_feature    order(654..656,663..665,744..746)
                     /locus_tag="AT5G27650"
                     /gene_synonym="T1G16.4"
                     /note="putative methyl-histone binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:438958"
     misc_feature    657..668
                     /locus_tag="AT5G27650"
                     /gene_synonym="T1G16.4"
                     /note="PWWP sequence motif; other site"
                     /db_xref="CDD:438958"
ORIGIN      

aacaataatccgtctctttcatttggtgtcctcgagaaccaaattcggataatctctcatcggaggatcgttgttgttgttgctagggttcttatcgatttgtaatgtacaaaactaaattaatcccggtgatgaacgaggatgctgtgattgttcaacaaacggattcgattcaggatcctaaggtaactccagatgatactgtagttgattcgagcggggatgttcacgaagccattgatgatgatgttgaagcttcttcacctatggagctagattcggcggttacaaatgacgctagggttctcgaaagtgagagatcggagaaagatggtgtcgtagggagtgaggaggaagatgagattaaaagcgaggatgttttaattgataaggatgatgagagttctgaggttaaagaagaagaagaagaagaagatggctctgatgatcaatctagtgagcttggttctgaagctgatgagaaggaattagatttgggtttgaaggaagagaaaaaaggagtttcggattataaatctcttttatctgagtttgatgattatgttgcaagtgagaaaatgggttctggagtttcgagggcattgagttatgggtttgaagttggagatttggtttggggaaaggtaaagtctcatccttggtggcctggtcatatattcaatgaagcttttgcgtctccttctgttcgtcgtatgaggaggattgatcatgttcttgttgcgtttttcggtgatagtagttatggttggtttgatcctgctgagcttattcctttcgaaccgaatttagaggagaaatcacagcagacggtttcgaagcattttgtgagagctgtggaggaagccaaggatgaggcgagtagaaggtcagctcttggtttgacttgtaaatgtcggaatccttataactttaggcctagtaatgtggaagattactttgctgttgatgtgcctgattacgagcttcaagccgtttactctgttgatcagattaagaattctagggataagtttttacccgctgaaaccatttcgtttgtgaagcaattggcgttagcacctcaagagtgtgatccagacagtttaaagtttatgaagaagaaagcagtggtttttgctttccgcaagtcagtgtttgaggagtttgatgaaacttatgcacaggcctttgggacaaaatcaccccgcagttcagtgagtacgctggaacctcataatagagcaccgcctcgagctcccttgagtggcccactggtcatagcagaaacgctaggtgaccttaagagctctaaaaaacccacaaaggttaaggtctctaaaaaaaaagacaagtatcttctcaaacgaagggatgaagctggtgataagtctgttcagtttggcgaaattgaagcaagttcagaagcttctcatatccagggaattgatggatctttggatggggattttgggctgcagagaagagctccgacgcttcaaactccaatgaaagatgagaagtctgggatcgtcagcatggattttgcctcttcaaatacagctattcctggtaaagaattttcagcttcaaagccctctcttgatgaagaaaagggtctagctgaaaaatcaaaggagagaatggaagaaagagctgctgtacttccagagcatgggaaatctgaagctatggcgagtcttaaacctaaagaagaagctggaacagatcttggatcagctggaagttctctccagcctctgcttgagtctcatacctcagcatctgaggggaaaagttccacagggtctgtaatcaagaaagtcaaagttgctaaacgatcttcaagtgaaatgagctcggagaatcctccttcagagccaaaaaagaaaaagaaaaagaagaaagagcctgattctgaccatccagtgaagagaaaaaatttgtattctggggaagctggggccaagaaattgtcccagcttggttcagcgcatttacaaacctatatggaagccgatgtgccgcagctgttgagccatctgcaagatctctctcttgaccctttccacggtttatccgttgcttcttttggaactgctaggaaattttttctccgtttccgttcacttaattaccagaaaagcttgtctgtatcttcctctgatgctactgtcgaaaatgccagagacacaaaaccctcaaaacctgtcaagacagtgaagagaaccgaagacccatcaaaagctggaaaaaaacggctctcttctgatcgtcaagatgaaatcccatcagctaagaagctgaagaaaactaatcagttgaaatcaatggcttctgaaaagaagatcattcgagaagcaaaggatagtataaaaccaataagagagccaagcagggtggtacaagcaaaaccagccagaggtcaaaccgggaagaaaacagctccatcagttaaggtggttgagccaacaatgctggtcatgaaattcccacctggcacatctctcccttcagccgcattgctaaaggcgaggtttggtcgcttcgggctgttagatcaatccgccattagggttttctggaaatcatcgacctgccgtgttgtctttctgtacaaagccgatgcccagactgcttttcgatatgcaacaggaaacaacactctatttggaaacgtgaatgtaaagtactttctccgtgatgtggatgctcctaaagccgagcctcgtgagccagaaaacaccaaggaagatgatgaaccacagagccagtggttggaccaagcaccaccgcttcaccaaccaacattaccgccaccaaacgtcaacctcaaatcctgtttgaagaaaccagttgatgacccgagcagtagtagcaacaatggaaacggtaaccgcgcagccgtaagagtcaaattcatgttaggtggtgaagaaaactcgagtaaagcaaacaccgagccaccacaggtcacaatgaccttgaatagaaacagtggaccttcttcatcatcatcatctgttccaatggaatttgttagtaagaagtttcaaaacgttgttcatcatcaacagcttcctccttctacattgcctccaattcttcctctccctccacaatacacaaaaccacaacaacttcccattaaaccagtagaccacgtcgaaccaccaatgccaccttcaagaaacttccgtggcccgatcccagcggttagcgctggggacatctctcaccagatgctcaaccttttgtcaaaatgcaacgaagtagtggctaacgtcacgggcttattgggctacgtcccttatcatcccttgtaacaaaacgaagcccgttgagagaaaatgtgagtgtttgtttggtttttggtgataatattgtatgttaggtattagtttggttcgttaactttaaatcatgtattacaatttataatgatgaatctctctccctctccctctcccaggcttgttttatatttcgtgtattattttttgaagttgtatgcttttgatatttgatgcactatgcggaaccaattccattgttgtgttacgttatatattctcatttggtctta

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