2024-09-29 03:53:59, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_119303 3080 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana exocyst subunit exo70 family protein G1 (EXO70G1), mRNA. ACCESSION NM_119303 VERSION NM_119303.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 3080) AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G., Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N., Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M., Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R., Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M., Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M., Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W., Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L., Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J., Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I., Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U., Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M., Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C., Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J., Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S., Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A., Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D., Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S., Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O., Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S., Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F., Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T., Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A., Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D., Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P., Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W., Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M., Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E., Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M., Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G., Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A., Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N., Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M., Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S., Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K., Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C., Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D., Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A., Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N., Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M., Martienssen,R. and McCombie,W.R. TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 769-777 (1999) PUBMED 10617198 REFERENCE 2 (bases 1 to 3080) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3080) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 3080) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003075). On Sep 12, 2016 this sequence version replaced NM_119303.2. FEATURES Location/Qualifiers source 1..3080 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" gene 1..3080 /gene="EXO70G1" /locus_tag="AT4G31540" /gene_synonym="ATEXO70G1; exocyst subunit exo70 family protein G1; F3L17.110; F3L17_110" /note="A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree." /db_xref="Araport:AT4G31540" /db_xref="GeneID:829281" /db_xref="TAIR:AT4G31540" CDS 663..2726 /gene="EXO70G1" /locus_tag="AT4G31540" /gene_synonym="ATEXO70G1; exocyst subunit exo70 family protein G1; F3L17.110; F3L17_110" /inference="Similar to RNA sequence, EST:INSD:AV529907.1,INSD:DR243477.1,INSD:EG506256.1, INSD:ES193973.1,INSD:EG506254.1,INSD:EH871368.1, INSD:EL043235.1,INSD:EL101671.1,INSD:DR243473.1, INSD:EH979302.1,INSD:EH943304.1,INSD:ES093663.1, INSD:DR243475.1,INSD:ES188422.1,INSD:AV785505.1, INSD:DR243474.1,INSD:AV524080.1,INSD:EH976823.1, INSD:EL215830.1,INSD:BP604167.1,INSD:N96430.1, INSD:BP618308.1,INSD:EL126224.1,INSD:BE524547.1, INSD:DR378586.1,INSD:DR243476.1,INSD:ES128099.1, INSD:EL253499.1,INSD:EL100375.1,INSD:ES104860.1" /inference="Similar to RNA sequence, mRNA:INSD:BX826595.1,INSD:BT004546.1,INSD:AY222338.1, INSD:AY139762.1" /note="exocyst subunit exo70 family protein G1 (EXO70G1); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: cytosol, exocyst; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein G2 (TAIR:AT1G51640.1); Has 805 Blast hits to 799 proteins in 127 species: Archae - 0; Bacteria - 1; Metazoa - 136; Fungi - 99; Plants - 561; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink)." /codon_start=1 /product="exocyst subunit exo70 family protein G1" /protein_id="NP_194882.2" /db_xref="GeneID:829281" /db_xref="TAIR:AT4G31540" /db_xref="Araport:AT4G31540" /translation="
MMAESTGVDRGIQSLIAARKSLKLSLEKSKAIGLALGKTGPRFDEIEQRLPLLEAAVRPIRADGEALKDVGGNINRAVGPAAAVLKVFDAVHGLEKSLLSDPKNDLSSYLSVLKRLEEALKFLGENCGLAIQWLEDIVEYLDDHHVADEKYLSNLKKSLRGLSEFHNDRGGGEEKERSQLRLDGGLRNAALDKLENEFRRLLKDNSVPLPMASPSSLGDQACIAPSQLPVTVIHKLQAILGRLRANNRLDKCISIYVEVRSLNVRASLQALDLDYLDISVSEFNDVQSIEGYIAQWGNHLEFAVKHLFEAEFKLCNDVFERLGLNVWMDCFSKIAAQAGMLAFLQFGKTVTDSKKDPIKLLKLLDIFTSLNKLRADFNRLFGGAACIEIQNFTRDLIKRIIDGAAEIFWELLVQVEIQKQTPPPSDGGVPRLVSFVTDYCNKLIGDKYKSTLTQVLLIHKSWRSERFQDNQLMVEVLRIIKAIEQNLDVWMKAYPDQTLAHFFGMNNHWHLYKNLKGTNIGDHLGDSWLKEHDQYKEYYATVFLRDSWGKLPSHLSREGLILFSGGHATARDLVKKRLKAFNDAFDEMYKKQASWVLPEKDLRDRVCQQIVQAIVPVYRSYMQNYGPLVEKDASSSKYVRYTVVALEKILSSLYMPKPMRYGSFKGTPPSEKFKNDVDLRRTTSAVV"
misc_feature 1545..2618 /gene="EXO70G1" /locus_tag="AT4G31540" /gene_synonym="ATEXO70G1; exocyst subunit exo70 family protein G1; F3L17.110; F3L17_110" /note="Exo70 exocyst complex subunit; Region: Exo70; pfam03081" /db_xref="CDD:460798" ORIGIN
ctgtactctatattagcaagattttttttttataaccgaagtcgcaagtgatgctgtgaaaccttgtgcttcactgtcatgcactttgtcagtttccgtcgggcatcgcgagaaaaaaaaaaactgtcgaaaaacaaaaaagtttctctttccgatatatcattcttttgtttactgggtctctctctctctagagaaactatcacaccgttttgattcttccgctaaactctcgccgtcggataaacttttcgccggcgaccctttaaagtagaagaccttatctatactcgatttctttcgtttgagtgtcttagttaaaaagttactccctttctgggaattctctggtttcggttcttgcaattttttcggtggttgtttggtagctgtgaaaatttctgtgtctgggtttgtttgtttctgtttgtgtaattgctaactagatttctgggtttggtttgatttattgaaagttggaagggtaataaaagagacgaaaaaaaaagagagaggaaagtgtttgatgttttgcatctgattctgaatcgattaatctccaaagtcatcatttttattaggaataaagtttggaagattacttgctttccttggagtgagatttttctgggttttctagggttttattttgattgaatttaatgatggcggagtctactggggtggatcgtgggattcagagcttgatagctgctagaaagtctttaaaattgagtcttgagaaatcaaaagccattgggttagctttgggtaaaactggtcctaggtttgatgagattgagcagagattgccgttgcttgaagctgcggttaggccgatacgagctgatggagaagctctcaaggatgttggtggtaacattaaccgagctgttggtcctgcagctgctgtgcttaaggtgttcgatgctgttcatggacttgagaagtctttgttatcagatcccaagaacgatctttcgagttatttatcggtgttgaagcggttagaggaagctttgaagtttctaggggagaattgtggtttagctatccagtggttggaagatatagttgagtatcttgatgatcaccatgtcgctgatgagaagtatctttcgaatttaaagaaatctttgagagggcttagtgaatttcataatgaccgtggaggaggagaagagaaagagagatctcaattgcgtcttgatggcgggcttaggaatgctgctttagataagctggaaaacgagttcaggaggctcttgaaggataacagtgtaccacttccaatggcgtctccatcatcactcggtgatcaggcttgcattgcaccgtctcagttgcctgttactgtaattcataaactgcaagccattcttgggagactcagagctaataacagactcgacaagtgcatttcaatatacgttgaagtgaggagcttgaatgttagagctagtcttcaagcacttgacttagattatctagatatctcggtttctgagttcaacgatgtgcagagcatagaagggtatatagctcagtggggtaatcatttagagtttgcggttaagcatctgttcgaagcagagttcaagctttgcaacgatgtctttgagagacttggtttgaatgtttggatggattgcttttcaaagattgctgctcaggccggtatgctcgcgttccttcagtttgggaaaactgtgactgatagcaagaaagatccaatcaagcttctgaagctgttagatatctttacgtcgttgaacaaactgagagcagatttcaaccgcctctttggtggagcagcctgtattgagatccaaaacttcacaagggatctcatcaaaaggataatcgatggtgcagcggaaatcttctgggagcttctggttcaggtagagattcagaaacaaaccccgcctcctagcgatggtggtgttcctagattagtcagttttgtaactgattactgcaataaacttattggagataagtacaagtcaacactaactcaggttctgctcatacataagagctggagatcagaaaggttccaagataatcagcttatggttgaggttttaagaataatcaaagccattgagcagaatctggatgtatggatgaaagcgtatccggatcaaacgcttgcgcatttcttcggtatgaataatcactggcatttatacaagaacttaaagggtacaaatattggggatcatttaggagattcgtggctgaaagaacatgatcagtacaaagagtattacgccactgtcttccttagagacagttggggtaagcttccaagccacttgagccgagaagggctgatacttttctcgggtggacatgccacagctcgtgatcttgtcaagaagagattgaaagcattcaatgatgcgtttgatgagatgtataagaagcaagcatcatgggtcttaccagagaaagatttaagggatagagtttgccagcagatagttcaggctattgtgccggtttacagaagctatatgcaaaactatgggccattggttgagaaagacgcgagttcaagcaagtatgtgagatacactgtggtagctttggagaagatactcagttctctttacatgcctaagcccatgagatatggaagcttcaaaggaacaccgccaagtgagaaattcaagaatgatgttgaccttaggcgtactacttctgcagttgtctgattgaagccatgttctgttctcgaatgttgtattaaaatgtgtccacattggtatgatctccatctcctggaagcagaggtattgttacacgtatataaatactgtcaatcaggtatagcttttagtcattggtcaagtccctttagctcattagtttcataagacttcatgttagggaccaagcgggtttagattattctatttaatgtattaatctgaagaacaggattataaaatgtgggattcctataatatcgaaagaaaaattgtccctataaatcttcttgttcttagtgttgtgctacatttgtaacttttattaattttaagacaataaaggaaaattcagcaaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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