2024-09-29 04:01:27, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_118554 1204 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana F-box family protein (SLY1), mRNA. ACCESSION NM_118554 VERSION NM_118554.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1204) AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G., Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N., Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M., Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R., Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M., Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M., Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W., Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L., Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J., Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I., Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U., Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M., Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C., Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J., Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S., Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A., Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D., Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S., Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O., Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S., Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F., Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T., Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A., Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D., Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P., Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W., Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M., Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E., Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M., Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G., Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A., Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N., Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M., Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S., Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K., Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C., Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D., Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A., Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N., Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M., Martienssen,R. and McCombie,W.R. TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 769-777 (1999) PUBMED 10617198 REFERENCE 2 (bases 1 to 1204) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1204) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1204) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003075). On Sep 12, 2016 this sequence version replaced NM_118554.2. FEATURES Location/Qualifiers source 1..1204 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" gene 1..1204 /gene="SLY1" /locus_tag="AT4G24210" /gene_synonym="SLEEPY1; T22A6.40; T22A6_40" /note="F-box protein that is involved in GA signaling. Regulates seed germination. Component of E3 ubiquitin complex. Interacts with DELLA proteins." /db_xref="Araport:AT4G24210" /db_xref="GeneID:828522" /db_xref="TAIR:AT4G24210" CDS 380..835 /gene="SLY1" /locus_tag="AT4G24210" /gene_synonym="SLEEPY1; T22A6.40; T22A6_40" /inference="Similar to RNA sequence, EST:INSD:EH956351.1,INSD:W43200.1,INSD:DR291328.1, INSD:ES150449.1,INSD:BP593798.1,INSD:EL168082.1, INSD:AA650679.1,INSD:EL249840.1,INSD:DR291329.1, INSD:EH948366.1,INSD:DR224555.1,INSD:EL236550.1, INSD:EG514654.1,INSD:EH804784.1,INSD:EL213616.1, INSD:DR291325.1,INSD:Z26737.1,INSD:EL096839.1, INSD:EL048977.1,INSD:AU228025.1,INSD:BP624054.1, INSD:EL332904.1,INSD:EH825968.1,INSD:W43201.1, INSD:AU237011.1,INSD:AI997513.1,INSD:EH805283.1, INSD:Z18408.1,INSD:EL086315.1,INSD:DR291327.1, INSD:EL067811.1,INSD:ES185967.1,INSD:EL208991.1, INSD:ES068901.1,INSD:EL119135.1,INSD:EL018132.1, INSD:ES136987.1,INSD:AA394377.1,INSD:EH832612.1, INSD:ES149471.1,INSD:DR291324.1,INSD:EH857652.1, INSD:EG514422.1,INSD:DR376010.1,INSD:DR291326.1, INSD:AA597346.1,INSD:EH858771.1,INSD:DR291323.1, INSD:ES052706.1,INSD:ES065572.1,INSD:ES068952.1, INSD:EH855097.1,INSD:ES135288.1,INSD:DR291322.1" /inference="Similar to RNA sequence, mRNA:INSD:AY087672.1,INSD:BT005395.1,INSD:BX828736.1, INSD:BT004192.1,INSD:BX829003.1" /note="SLEEPY1 (SLY1); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G48170.1); Has 122 Blast hits to 122 proteins in 25 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 9; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink)." /codon_start=1 /product="F-box family protein" /protein_id="NP_194152.1" /db_xref="GeneID:828522" /db_xref="TAIR:AT4G24210" /db_xref="Araport:AT4G24210" /translation="
MKRSTTDSDLAGDAHNETNKKMKSTEEEEIGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWPLSKPNPRARFGKDELKLTLSLLSIRYYEKMSFTKRPLPESK"
misc_feature 476..607 /gene="SLY1" /locus_tag="AT4G24210" /gene_synonym="SLEEPY1; T22A6.40; T22A6_40" /note="F-box domain found in Arabidopsis thaliana F-box protein GID2 and similar proteins; Region: F-box_AtGID2-like; cd22151" /db_xref="CDD:438922" misc_feature order(482..484,494..496,503..508,515..520,530..532, 536..541,551..559,563..565) /gene="SLY1" /locus_tag="AT4G24210" /gene_synonym="SLEEPY1; T22A6.40; T22A6_40" /note="putative Skp1 binding site [polypeptide binding]; other site" /db_xref="CDD:438922" ORIGIN
ctctggtacattcaatgaacactctttttaatagttgaaaataaacatttgggaagaactaagaagaaacaacattataagatgggcttgggctttttgttgtattgttttttatgttttacaattttatttaacaaacaagatgacaaaaaaaaaaaaaaggactccaaaagtccaaaacagctatggagtatatgagggtaaagtcgtcattttacaaaaagcatttttatcttcgttttgtcgtcttcgaaagttctcaaagagaaggcatctgagaaaccccaatctctaatcttcttttcaattcaatacttttttttctcaatctctcctctcaaatcaaacaactttgattgatcttcgcaatcgattccacatgaagcgcagtactaccgactctgatttggccggtgatgctcacaacgagacaaacaagaagatgaagagtacagaggaagaagaaatcggattctccaatttagacgagaatctagtgtacgaggtgttgaaacacgtcgacgcaaagaccttagctatgtcatcttgcgtgagcaagatctggcacaaaacggcacaagacgagcggctttgggagctgatctgtactcgtcactggactaacatcggctgcgggcagaaccagctcagatctgttgtgttggcgcttggtggcttccgaagactccactctctttacctctggcctctctctaaacccaatccgcgtgctaggttcggtaaggacgagcttaaactcactctttctcttctctcaattcgatactacgagaagatgagtttcactaagagacctcttccagaatccaaataattgactacaaattattagagtttggttttggagtttgtgtatttggagtttgttgattggtaagtcagatgtgatgttcaatgctggcaataaaatttgttggtatccataagccagactgttagcaacagttgtgttctgtaataatagagggtgatgagaatttttaattactgtaatcggagctgattaaaagtagatttaatatcaaatgtgattcgattttgttgtaatggttctgtcgtgaagttaagttggtccgtagttggacaatgattgtaacaaaatcgattcgtgatccagtttggtaagattaagaactgttagtgacgattctgttttattattcaatgaaaaacaatgttcacc
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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