2024-09-29 03:49:45, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_117501 2060 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana CBS domain protein with a domain protein (DUF21) (AT4G14240), mRNA. ACCESSION NM_117501 VERSION NM_117501.5 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 2060) AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G., Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N., Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M., Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R., Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M., Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M., Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W., Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L., Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J., Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I., Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U., Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M., Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C., Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J., Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S., Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A., Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D., Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S., Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O., Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S., Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F., Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T., Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A., Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D., Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P., Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W., Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M., Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E., Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M., Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G., Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A., Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N., Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M., Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S., Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K., Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C., Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D., Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A., Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N., Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M., Martienssen,R. and McCombie,W.R. TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 769-777 (1999) PUBMED 10617198 REFERENCE 2 (bases 1 to 2060) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2060) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 2060) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003075). On Sep 12, 2016 this sequence version replaced NM_117501.4. FEATURES Location/Qualifiers source 1..2060 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" gene 1..2060 /locus_tag="AT4G14240" /gene_synonym="DL3160C; FCAALL.149" /db_xref="Araport:AT4G14240" /db_xref="GeneID:827065" /db_xref="TAIR:AT4G14240" CDS 211..1695 /locus_tag="AT4G14240" /gene_synonym="DL3160C; FCAALL.149" /inference="Similar to RNA sequence, EST:INSD:BP781916.1,INSD:EL272448.1,INSD:BP779396.1, INSD:EH804455.1,INSD:EL102245.1,INSD:DR262056.1, INSD:EL222712.1,INSD:EL072910.1,INSD:EG436806.1, INSD:EL173324.1,INSD:EL217972.1,INSD:BP777535.1, INSD:BP856866.1,INSD:EH860359.1,INSD:EL120092.1, INSD:ES155613.1,INSD:EL034296.1,INSD:EL131025.1, INSD:EG436818.1,INSD:AV556519.1,INSD:EH975151.1" /inference="Similar to RNA sequence, mRNA:INSD:BX828497.1,INSD:AK176768.1" /note="CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein with a domain of unknown function (DUF21) (TAIR:AT4G14230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink)." /codon_start=1 /product="CBS domain protein with a domain protein (DUF21)" /protein_id="NP_193160.3" /db_xref="GeneID:827065" /db_xref="TAIR:AT4G14240" /db_xref="Araport:AT4G14240" /translation="
MHLINAVAAARILSGIGQSNGNNGGEAIPFGSFEWITYAGISCFLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPNEKKQAAAIFPVVQKQHQLLVTLLLCNAMAMEGLPIYLDKLFNEYVAIILSVTFVLAFGEVIPQAICTRYGLAVGANFVWLVRILMTLCYPIAFPIGKILDLVLGHNDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNVIGLLLVKSLLTVRPETETLVSAVCIRRIPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKVPPSTLLEEHTDESNDSDLTAPLLLKREGNHDNVIVTIDKANGQSFFQNNESGPHGFSHTSEAIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSIARAPSSRKLLAQKGTGGQNKQGQTNKVPGQEQDKMLGTITEPIRRNN"
misc_feature 340..>1494 /locus_tag="AT4G14240" /gene_synonym="DL3160C; FCAALL.149" /note="Hemolysin-related protein, contains CBS domains, UPF0053 family [General function prediction only]; Region: TlyC; COG1253" /db_xref="CDD:440865" ORIGIN
tagggtctaaatttaatttccttacaaaactttttgccgttttgtcctggaaaattgtactgaactgaatccgacatgttggtgagatccaacgaattataaaattatcaaaaagaggcaaaattaaaaaagaaggtcgtgtgaccagagaatcacaaacacagagagattcatcatcgaatcataaagctctgttttcaagaagaaaatatgcatctgattaatgcggtggcggcggcgaggattttatccggaatcggacaatctaacggtaataacggaggagaagcgattccgtttggatcgtttgagtggatcacttacgccggaatatcttgtttcctcgtactcttcgccgggattatgtctggtcttactttgggacttatgtctcttggtcttgtcgagcttgagattcttcaacgtagtggtactcctaatgagaagaaacaagccgctgcgatttttccggttgttcagaaacagcatcagcttttagtgacactgcttctgtgtaatgctatggctatggaggggcttcctatatatttggataagttattcaatgaatacgttgcgattattctttctgtcacattcgttcttgctttcggtgaggttattcctcaagcgatatgcactaggtatggactcgcggttggagcgaattttgtctggcttgtccgcattttaatgactctctgctatccgattgcctttcccattggcaagattttagatttggtgctgggacacaatgatgctttatttaggcgggctcagttgaaagctcttgtatccattcacagccaagaggctggtaagggaggtgagcttacacatgatgagacgacaatcattagtggagctcttgatttgactgagaagactgcacaagaagccatgacaccaattgagtctaccttctccttggatgtaaattcaaaattggattgggaagctatggggaagattctggcacgaggccatagccgcgttcctgtctactctgggaatccgaaaaacgttatcggacttctcttggtgaagagtcttcttacagttcgccctgaaacagagacccttgtcagcgcagtttgtatacgccggattccaagggttccagctgatatgcctctctatgatatactgaatgagtttcaaaagggaagcagtcacatggctgcagttgtgaaggttaaggggaaaagcaaagtcccaccttcaactttgcttgaagaacacactgatgaaagcaatgactccgacttgactgcacctttgttactaaaacgagagggaaaccatgacaatgtcattgtcacaatcgacaaggctaatggacaatctttctttcaaaacaacgagagtggacctcacgggttttcacatacttcagaggctatcgaggatggtgaggtaattggtatcatcactttagaagatgtctttgaagaacttttgcaagaagagattgtggatgaaactgatgaatatgttgacgtacataaaaggattcgagtagcagcagcagcggctgcttcatcaatagcgagagctccttcaagccggaagttgcttgcgcaaaagggaactggaggacaaaataagcaagggcagacgaataaagttcctggtcaggaacaagataaaatgcttggaactattaccgagccgattcgaagaaacaactgatgttgtgttcttgcttaaggaggcaaaaactctgttgcggtataaagaaagaaaacaaagaataaattataagatccaggttcttctgtatactttgatccatcacataaattatatatatataaaaatataaaaagtcagcagaagcaatggttcaacccgatttttgaagatgctttgtttccttgtattatacaaaatacctacaatttgtaatttactccgtaacttgattcttttttcctttttgttcactcaatttttcgtagaatgcagtagtaatagttagctatatggtcacatactgttgtggccgctattttgtaattgcacttttgaaacaatggatcaaaagtttctccatc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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