2024-09-29 03:45:11, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_116210 2000 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs) family protein (AT3G63450), mRNA. ACCESSION NM_116210 VERSION NM_116210.4 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 2000) AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M., Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B., Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P., Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V., Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S., Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P., Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S., Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H., Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M., Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A., Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C., Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P., Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M., Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S., Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L., Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A., Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B., Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J., Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X., Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M., Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S., Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M. and Tabata,S. CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium; Institute for Genomic Research; Kazusa DNA Research Institute TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 820-822 (2000) PUBMED 11130713 REFERENCE 2 (bases 1 to 2000) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2000) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 2000) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003074). On Sep 12, 2016 this sequence version replaced NM_116210.3. FEATURES Location/Qualifiers source 1..2000 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="3" /ecotype="Columbia" gene 1..2000 /locus_tag="AT3G63450" /db_xref="Araport:AT3G63450" /db_xref="GeneID:825520" /db_xref="TAIR:AT3G63450" CDS 450..1664 /locus_tag="AT3G63450" /inference="Similar to RNA sequence, EST:INSD:DR363809.1,INSD:ES142071.1,INSD:ES175051.1, INSD:EH921901.1,INSD:EL987951.1,INSD:ES194110.1, INSD:ES008487.1,INSD:EL975621.1,INSD:EL156497.1, INSD:BP793639.1,INSD:ES086524.1,INSD:ES187527.1" /inference="Similar to RNA sequence, mRNA:INSD:BT012552.1" /note="RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G51950.2); Has 366 Blast hits to 230 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 313; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink)." /codon_start=1 /product="RNA-binding (RRM/RBD/RNP motifs) family protein" /protein_id="NP_191904.2" /db_xref="GeneID:825520" /db_xref="TAIR:AT3G63450" /db_xref="Araport:AT3G63450" /translation="
MDVYEATRIVLSRIQNLDPANASKIIGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKDLEERLSFLTPRTAEDFESDLGFGWGHRKEVLRSNSVPPRLANQFTGYPFSPKGVNLQQSEAQRAAALMMGDDLHKLGIWRPERIDLSATACPASRQIYLTFPADSIFREEDVSDYFSTFGPVQDVRIPYQQKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKPYKEKGKVPDKTKPSRDIMDFQLGGRAFHEDLLWKRRFEERALELQSTRLMNLQLLDVEKQFQLNFDQTLLVSPRLVSNNQRVCTKENDEDTIKLPESLEDDRLVDSPIVSPKHHFLECGVAAETKGSGLSSPSFDQDESSTGTLKEPLKSLKCQMPRLSMMGITQGSSGPTTCRVGI"
misc_feature 918..1127 /locus_tag="AT3G63450" /note="RNA recognition motif (RRM) found in Arabidopsis thaliana zinc finger CCCH domain-containing protein 46 (AtC3H46) and similar proteins; Region: RRM_AtC3H46_like; cd12458" /db_xref="CDD:409891" ORIGIN
agagagagagtgtgtgtgtgtgttttgttgtgaatttgattgcaaaaatccaaagtttgacgctttgacccactcacttgggagttggagcccagaagacacaacagtcactccactcttctttaactcttttttttatttaatttccccacaccacacgactcacgagggaagtggcaactttgatttttgcaagcagaggaggaagaagaagaagtagaaagaagcttaggtatggagtggagtggtacactggtactagagtgatgatggtggtaaggtagttgagaaagaaagcctttttagctttgctaaagtccaagacaagaaaccaaacatctttttgtacacaagacaagacaacaatagcagtgtttctttttcctgccaaagaaagattaagcgagagagagagagacaaggtctcatcgagcaaagagtgtgtttccatggatgtgtacgaagcaactaggatcgtgctctctagaatccagaacttagacccagctaatgcttccaagatcataggtcttctcctccttcaggatcacggtgagaaggagatgataaggttagctttcgggcctcagaatctccttcattctgtcatagccaaggccaaaaaggacctcgaagagcggctttctttcttgactccgagaaccgccgaagattttgagtccgatttagggttcggatggggtcaccgcaaagaggtgcttaggtccaactctgttccgccgagacttgccaatcagttcaccggttatccattctcccccaaaggtgtcaacttgcaacagagtgaagcccaaagagctgctgctttgatgatgggcgatgacttgcacaaattgggaatatggaggccagagaggatcgacctctcggccacggcctgcccggcgtctagacagatctatctgactttcccggctgacagtatcttcagggaagaagatgtttccgactacttcagtacgtttgggccagttcaggacgtgaggataccttaccagcagaagaggatgtttgggttcgtgaccttcatgtacccagagactgtgaagagcattctggccaaagggaaccctcactttgtgtgtcattccagggttcttgttaagccttacaaggagaaaggcaaagtcccagacaagactaagccatccagggacattatggatttccagcttggggggagggcttttcatgaagatctgctgtggaaaaggaggtttgaagaacgagctcttgagctgcagagcacaaggctgatgaatctgcagcttctcgacgtcgagaaacagtttcaactcaatttcgaccaaacactacttgtttctccacgactagtttcaaacaatcagagagtgtgcacaaaagagaatgatgaggatacaatcaaacttccagagagcttggaggatgataggctggtggatagcccaattgtatcaccgaaacaccattttctcgagtgtggggtagctgcagaaacaaagggttcaggcttgtcgtcgccatcttttgatcaggatgagtctagtacaggtacattgaaagagcctctcaagtccttgaagtgccaaatgccgaggttatcaatgatggggataacacagggcagcagcggaccaacaacgtgtcgcgttgggatctaaacccattcaaaacagctaaccagtggaagagaagattaaccaaaaaaaaggaaaaaaggtgaagagcaattagggagacgtggatgtaagatagatagagaagaagatggggggaaggttggttgttgtaccattcattaaacaagagtgttagtaaatgagtcccgtgaatgttatgcaatggaccactccccacaggtgaccttaatattaattaatcatatataaaaaaagcacaagaagagattgattattcaccagaaaaagaaaggttggtttgtctatttttttgtttgtattcaatcactatatatttatctaagttaagttgtaaat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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