2024-09-29 04:00:38, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_115172 900 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana Modifier of rudimentary (Mod(r)) protein (VPS37-1), mRNA. ACCESSION NM_115172 VERSION NM_115172.4 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 900) AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M., Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B., Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P., Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V., Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S., Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P., Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S., Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H., Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M., Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A., Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C., Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P., Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M., Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S., Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L., Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A., Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B., Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J., Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X., Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M., Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S., Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M. and Tabata,S. CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium; Institute for Genomic Research; Kazusa DNA Research Institute TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 820-822 (2000) PUBMED 11130713 REFERENCE 2 (bases 1 to 900) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 900) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 900) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003074). On Apr 18, 2007 this sequence version replaced NM_115172.3. FEATURES Location/Qualifiers source 1..900 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="3" /ecotype="Columbia" gene 1..900 /gene="VPS37-1" /locus_tag="AT3G53120" /db_xref="Araport:AT3G53120" /db_xref="GeneID:824478" /db_xref="TAIR:AT3G53120" CDS 89..742 /gene="VPS37-1" /locus_tag="AT3G53120" /inference="Similar to RNA sequence, EST:INSD:AV815969.1,INSD:AV797199.1,INSD:BP654223.1, INSD:BP639679.1,INSD:BP607233.1,INSD:ES048362.1, INSD:BP657254.1,INSD:EG503209.1,INSD:AV784747.1, INSD:BP637991.1,INSD:BP616194.1,INSD:BP651783.1, INSD:EL172100.1,INSD:T42676.1,INSD:BP636108.1, INSD:BP639284.1,INSD:N96639.1,INSD:ES125301.1, INSD:EH858842.1,INSD:EH849960.1,INSD:DR370117.1, INSD:DR322175.1,INSD:ES153940.1,INSD:EL102070.1, INSD:DR186191.1,INSD:EL202174.1,INSD:AV806749.1, INSD:BP650272.1,INSD:AV790240.1,INSD:BP644798.1, INSD:AV817907.1,INSD:EH822958.1,INSD:BP661267.1, INSD:EL261936.1,INSD:ES102867.1,INSD:BP642175.1, INSD:EL226300.1,INSD:AU227123.1" /inference="Similar to RNA sequence, mRNA:INSD:BX822324.1" /note="VPS37-1; CONTAINS InterPro DOMAIN/s: Modifier of rudimentary, Modr (InterPro:IPR009851); BEST Arabidopsis thaliana protein match is: Modifier of rudimentary (Mod(r)) protein (TAIR:AT2G36680.1); Has 448 Blast hits to 448 proteins in 101 species: Archae - 0; Bacteria - 6; Metazoa - 285; Fungi - 19; Plants - 79; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink)." /codon_start=1 /product="Modifier of rudimentary (Mod(r)) protein" /protein_id="NP_190880.1" /db_xref="GeneID:824478" /db_xref="TAIR:AT3G53120" /db_xref="Araport:AT3G53120" /translation="
MFNFWGSKDQQQGQSRPQEASSQSPWYSPSLVSSPSSSRPQSSGQISAQVSPGEAAGIIVFLKDKSVDELRKLLSDKDAYQQFLLSLDQVKVQNNIKDELRRETLQLARDNLEKEPQIMELRNQCRIIRTTELATAQEKLNELERQKEEILKFYSPGSLLHKLQEAMNQVDEESEALQEKFLEKEIDTAAFVQKYKKLRTTYHRRALIHLAAKTSNI"
misc_feature 275..715 /gene="VPS37-1" /locus_tag="AT3G53120" /note="Modifier of rudimentary (Mod(r)) protein; Region: Mod_r; pfam07200" /db_xref="CDD:462117" ORIGIN
ttaaattttgtcgatctggtaggaagaagaagtacaagagaacaagaaaaagtcaattcctttcgttagtcggcgaattctagaaacgatgttcaatttctggggatcaaaagaccaacaacaagggcaatctcgtcctcaggaagcttcttcacagtcgccatggtactcgccttctttagttagctcgccaagctcatcccggcctcaaagttcaggtcagatttcagcacaagtatcaccgggtgaagcagctggcattatcgtcttcttgaaagacaaaagcgtggatgaactcaggaagcttctctctgacaaagatgcgtatcagcaatttctgctctctcttgaccaggtcaaagtccagaataatatcaaagatgagctccgtagagaaacattgcagctagctagagacaacttggagaaggagccacagataatggagctcagaaaccaatgcagaattatccgtacaactgagctcgcaactgcgcaagaaaagcttaatgagcttgagaggcaaaaagaagagatcctcaaattctactcccctggttctcttcttcataaacttcaagaggctatgaatcaggtggatgaagaatccgaagccctgcaagaaaagttcctagagaaggagattgatacagcagcatttgtgcagaaatacaagaagcttcgtactacctatcatcgacgagcattgatccatcttgccgctaaaacgtcaaacatttgagattaaaaagctttacacattgaattcgagactttggttgtgtattatgactcttacccattgttgtaaaaaaaatgctttgctgtttactgtttaggttcatactaaagtgattgacattgacataaaaaatgttttccttttcccttaacaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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