2024-09-29 03:46:00, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_112655 3811 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana uncharacterized protein (AT3G17740), mRNA. ACCESSION NM_112655 VERSION NM_112655.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 3811) AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M., Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B., Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P., Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V., Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S., Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P., Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S., Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H., Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M., Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A., Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C., Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P., Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M., Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S., Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L., Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A., Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B., Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J., Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X., Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M., Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S., Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M. and Tabata,S. CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium; Institute for Genomic Research; Kazusa DNA Research Institute TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 820-822 (2000) PUBMED 11130713 REFERENCE 2 (bases 1 to 3811) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3811) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 3811) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003074). On Sep 12, 2016 this sequence version replaced NM_112655.2. FEATURES Location/Qualifiers source 1..3811 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="3" /ecotype="Columbia" gene 1..3811 /locus_tag="AT3G17740" /db_xref="Araport:AT3G17740" /db_xref="GeneID:821042" /db_xref="TAIR:AT3G17740" CDS 43..3492 /locus_tag="AT3G17740" /inference="Similar to RNA sequence, EST:INSD:EH916458.1,INSD:EH870738.1,INSD:AV546255.1, INSD:EL183187.1,INSD:EL175650.1,INSD:BE526235.1, INSD:AU229318.1,INSD:AI995539.1,INSD:ES103391.1" /inference="Similar to RNA sequence, mRNA:INSD:BT009690.1,INSD:AK117337.1" /note="unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1740 (InterPro:IPR013633); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17712.1); Has 409 Blast hits to 335 proteins in 133 species: Archae - 1; Bacteria - 0; Metazoa - 140; Fungi - 188; Plants - 42; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink)." /codon_start=1 /product="uncharacterized protein" /protein_id="NP_188401.1" /db_xref="GeneID:821042" /db_xref="TAIR:AT3G17740" /db_xref="Araport:AT3G17740" /translation="
MSNTPEDGDGAQVTTGGLFPVFPTSANSISAISNAPQWLRNASFTTDLSVINAAASTAPSSSEVEAGDDEDEEGGADGNIGLANQARVYNLVEEEGSLESDDDKVKRKREKKKKRKSDNASDESRSRKSDEYYSKPVKDYYLDTRPDPDNLAYGSIYRMNVPRYKLDNSQRVPGSGSLRFYLRNRRSSMLDTEIDIDSLEGRAKSDTRYWYAKHAAMERNKNFKRIRLSAASEAVDSSFDNFIPLEEDVTVPESDEEDVLSKDSMIGASWEDEVLNKTREFNRVTRERPHDAKAWLAFADFQDKVSSMQSQKGVRLQTLEKKISILEKAFELNPDSEELLLALLKAYRSRDNADVLISRWEKALMQNSASYKLWREFLCVVQGEFSRFKVSEVRRLYSYAIQALSSACSKRHRQVDTTSEPLDSAAIQQELVLVDMLVSLCRFEWQAGYQELATALLQAEVEFSIFSPSLLLTEQSKLRLFEHFWSSNGARVGEEGAFGWLLWLEKEEENRQKILKEESSDDNEVGGWTGWTEQVSGRNGDDIASANTGEVDVDRKGLDEEMEDENSKPEDDTEAMLKLLGIDVNTAASDEVKDTSTWVKWFEEEVSRDHSQWMPTRKAGEFSSVEGMGEGEDEEQLSSVVLYEDINGYLFSLRSKEARLSLVYQFIDFFGAHISPWTSSNSLSWSEKISSLETFSDSMLENLRSVHECLSKSDSANCFSLGSLLGGSCDLSMRTEMMKFLRNAILLCLNVFPRNYILEEAVLVAEELFVTNMKTCEVATMPCQALAKRLLKSDRQDLLLCGVYAQREAASGNMKHARRVFDMALTSICGLPKELQCNTPLLCLWYAESEVANSSGSGRDTESSSRAMHILCYLGSGLAYSPYTSQSSSMQILRARQGFREKLKKIQSTWSHGVTDDQSAALVCSAALFEELTNDLPGALEILEHMFSSVLPGRKSQSHQLELLFNYYVRMLQRHQDDLTLSQLWKPISEGLQLYPLNPELYRALVDICNHRMTSHKLRMMFDDYSRKNSSVVVWLFALSYELSKGGSSHRIRGLFERALAQDTQNNSVILWRCYIAYEIDIADNPSAARRIYFRAINACPWSKKLWLDGFGKLGSVLTAKEMSDLQEVMRDKELNIRTDIYEILLMQG"
misc_feature 460..>537 /locus_tag="AT3G17740" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature 880..2055 /locus_tag="AT3G17740" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:462472" ORIGIN
aaaaaaaatacagaatcggttttgttttttccggtggatgtaatgtcgaatacaccagaagacggcgacggagcacaggtaactacaggcggcttgttccccgtcttccctacttcggcgaactccatctcagctatttcgaatgctcctcaatggcttcgcaacgctagcttcactacggatctctctgtcatcaacgctgccgcttcgacggctccttcctcatccgaggtcgaggctggagacgacgaagatgaagaaggaggagctgatggaaatatcggtttagctaatcaggctagggtttataatttggttgaagaagaagggtctttggagtctgatgacgacaaggtaaagaggaagcgagagaaaaagaagaaacggaagagtgataatgcttcggatgaatctcgttctcgtaaatctgatgaatactattcgaaacctgtgaaggattattacttggacactcgtcctgatccagataatctggcttatggctctatttacaggatgaatgttcctcgttataaacttgacaattctcagagagttccagggtcaggttctctgaggttttatttgcggaatcgacgtagttctatgcttgacacagagattgatattgattctttggaggggagagcaaagtctgatacccgatactggtatgcaaaacatgctgccatggaacgcaacaagaatttcaagcgtattcgtttatctgctgcaagtgaagctgtggattcttcctttgataatttcattccactggaggaagacgtgactgttccagaaagtgacgaagaagatgttttatcaaaggactcaatgattggagcatcatgggaggatgaagtgctgaataaaacacgggagttcaacagagtgacgagagaacgtccccatgatgcaaaggcatggctggcatttgctgattttcaagacaaggtttcaagtatgcaatctcagaaaggagttcgcctgcagactttagagaaaaagattagtatacttgagaaggcttttgagctgaacccagatagcgaagaactgttgcttgctctgctcaaggcataccgaagcagagacaacgctgatgtactaatcagtaggtgggaaaaggcacttatgcagaattccgcaagctacaaattatggagggagtttttatgtgttgttcaaggggagttctccagattcaaagtatcagaagtgaggaggctgtattcttatgcgatccaggctctttcttctgcttgcagcaagcgacataggcaggtggatacaacatctgaaccattggattctgctgccatccaacaggaactcgttctagtcgatatgctagttagcctctgcaggtttgagtggcaggctggttaccaggagctggccacagcgttacttcaagccgaagtggaatttagcatcttttctccatctttgttgctaactgaacagagtaaattacgactgtttgagcacttttggagcagtaatggtgctagagttggagaagaaggagcttttggatggttattgtggctggagaaagaggaggaaaacaggcagaaaattttgaaagaagaatcctctgatgacaatgaagtaggtggttggacaggttggacagaacaggtctcaggtagaaatggagatgatattgcttcagctaacactggagaggtcgatgttgatcggaagggtctggatgaggaaatggaagacgagaatagcaaacctgaagatgacaccgaagctatgctgaaattattgggcattgatgtcaatactgcggccagtgatgaggttaaagatacatcaacttgggttaaatggtttgaagaagaggtttctcgagatcacagtcaatggatgcctactcggaaagctggtgaattctccagtgttgagggaatgggtgagggagaagatgaagagcaactctcaagtgttgtactatatgaagatataaatggatatctattttccttacgttcaaaggaggcccgcttatctctggtataccagttcattgatttcttcggtgcacatatctccccatggacttccagcaacagtttgtcgtggagtgagaaaataagtagccttgaaacattttcagattccatgttagaaaacttgagaagtgttcatgaatgtttgtcgaaatcagatagtgccaactgtttcagcttgggatctcttctaggtggcagctgtgacttatctatgcggactgagatgatgaagtttctccgcaatgccatcttgctttgtctaaatgttttcccgcgaaattacattctcgaagaagctgtgcttgttgcagaagaactatttgtaacaaatatgaaaacatgtgaggtagcaactatgccatgccaagctttggccaaacgtctcctgaaaagtgaccggcaggatctactactttgtggagtttatgcacagagagaagctgcttctggaaatatgaaacatgcaaggcgagtcttcgacatggcactgacttctatctgtggcctccctaaggaattacagtgtaacactcctttgctatgtttatggtatgctgaatcggaagtagccaatagtagcggcagtggtagggatacagaatcatcatctcgtgctatgcatattctgtgctacctgggaagtggtctagcttatagtccttatacttcccagtcttcaagcatgcaaattcttagagcacgccaggggttcagagagaagcttaagaagatacaatcaacatggtctcatggtgtcacagatgatcaatcagcagcgcttgtttgttcggcagctctatttgaggagttaacaaatgaccttcctggtgctcttgagatcttagagcacatgttcagttctgttcttccaggaagaaaaagtcaaagtcatcaacttgaactcttgttcaattattatgtgagaatgcttcagagacaccaggacgatctaactttgtcacaactttggaagcccatatcagagggactgcaactgtatcctctcaatcctgaactttatcgagctttggtggacatttgtaatcaccggatgacatcccataaactgagaatgatgttcgatgactactcccgcaagaattcgtctgtcgttgtttggctatttgcactttcttatgaattgagtaaaggaggctcatcacacagaatccgcggattgtttgaaagggcattggcacaagatacacaaaacaactcagttattctatggcgttgctacatagcatatgagatcgacatcgcggacaatccatcagcagctagaaggatttatttccgagctataaatgcatgcccatggtcgaagaaactatggctcgatgggtttgggaagctgggatcagtcttgacggcaaaagagatgtcagatttacaagaagtgatgcgggacaaggaactgaacattaggacagatatctacgagattctgcttatgcagggatgagatcatttaagtgtcaactaacaaatattgttgtaatatggaaacgtgattttctataaataatcaagtataagttcatttaagtatttatgagtgtgcgtctcactcgataagttcattgactccccaaaattggccaatgttggcaggtttaagtgaatatgtttccttgaacggaaatttgtattggactgcttacaagagactcgtgagtatttttctcggaagctttgattcctccacggaaatatcgatgctcttttgcctccttgtgagaagtgtttctggctcactagataaacttgtcatcactgtattt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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