2024-09-29 03:54:34, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_111722 1451 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana plectin-like protein (AT3G08880), mRNA. ACCESSION NM_111722 VERSION NM_111722.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1451) AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M., Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B., Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P., Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V., Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S., Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P., Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S., Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H., Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M., Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A., Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C., Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P., Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M., Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S., Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L., Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A., Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B., Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J., Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X., Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M., Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S., Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M. and Tabata,S. CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium; Institute for Genomic Research; Kazusa DNA Research Institute TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 820-822 (2000) PUBMED 11130713 REFERENCE 2 (bases 1 to 1451) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1451) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1451) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003074). On Sep 12, 2016 this sequence version replaced NM_111722.2. FEATURES Location/Qualifiers source 1..1451 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="3" /ecotype="Columbia" gene 1..1451 /locus_tag="AT3G08880" /db_xref="Araport:AT3G08880" /db_xref="GeneID:820036" /db_xref="TAIR:AT3G08880" CDS 197..802 /locus_tag="AT3G08880" /inference="Similar to RNA sequence, EST:INSD:ES059402.1,INSD:EL994748.1,INSD:BP855807.1, INSD:ES060479.1" /note="unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01570.1); Has 177 Blast hits to 175 proteins in 60 species: Archae - 4; Bacteria - 33; Metazoa - 18; Fungi - 11; Plants - 59; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink)." /codon_start=1 /product="plectin-like protein" /protein_id="NP_187500.2" /db_xref="GeneID:820036" /db_xref="TAIR:AT3G08880" /db_xref="Araport:AT3G08880" /translation="
MGNASENFDIEDLMSYGDDLINLLNVKNGFDIISQSSEQFKALNFACHEDFNQIQGSIEDCKTKLYACKKKTEEAYSDIAAEDEIERLQKELDEEMEREFKLKDELRLVADELKDLNAQLSSIDEHKQSTKRKVRDDLRAEKKLSMYASVTNVIPDIDDPSKISGYMVDREKRLIEKFQFETNKMTAYETCNSIWSIINKQ"
misc_feature <332..>670 /locus_tag="AT3G08880" /note="family of the cytolysin A (ClyA) family alpha pore-forming toxins (alpha-PFT) including Bacillus cereus HblB, Aeromonas hydrophila AhlB, Bacillus thuringiensis Cry6Aa and similar proteins; Region: ClyA-like; cl45899" /db_xref="CDD:459244" ORIGIN
acttttggaataaaaaaatcaaaaatcaaaattcagatctttcctcttcatatctccctcctctctccagattccagaatatcacgtacttacttggtggtatcagaaatctacgatttttctggtgagggttttgaggtgtggagctagggcttttgctgctagatagttgatttttcaattttccgcagcagaaatgggaaatgcgtcggagaatttcgatattgaagatctcatgtcttatggagacgatttgatcaacttattgaatgttaagaatggttttgatattatatctcaaagttctgagcagttcaaagctctcaattttgcttgccatgaggatttcaatcagatacaaggctctattgaagattgtaagacgaaactctatgcttgtaagaagaaaactgaggaagcatattcagatattgcggctgaagatgaaattgaacgtcttcagaaagagcttgacgaagagatggaacgggagttcaagctaaaagacgagcttagactagtcgctgatgaactcaaggacctgaatgctcaattgtcatcgatagatgaacataagcaatctacaaagagaaaagtgagggacgacttgagagctgagaaaaagctatcaatgtatgcttctgtcacgaacgttataccggacattgatgatccatcaaagatctcaggctatatggtagatcgtgaaaagaggctaattgagaagtttcaattcgagacaaataagatgacggcatacgagacatgtaacagtatctggagcatcataaacaaacaataaacatacttggcaccacttcatttgtatgatatatgtgtgagcagtcttggttttagcttagcaaccaaaaacctctttatctaccatcagttccgttgatgtaaacactttctactttacttaactttggatttttgttatatgattttgaattttcttctcctgtaacatcatcatcaatctaagatttttccccctgcaagtttccgtgttcatgttgcagctgctcctgccgttttcctgatcgttttttgctgtgcagattgatgcacaagttcagatttaggttgtacaaattctaaaggaacagaagtgcagttttttagtttctatgctttcattatattcttaaacgcctttcataaggatttaatgattttgaatccaaatcttggtggcctagcaaactttgggattattacctagcttctcttctgaactgtggaacctgcttagtgtctccactgaaccattgaacttgttagggtttgccatttttctgtcttatattggggtagattttacaggccagagaactcgatccaatttagcgagagtgtacacagtacacactatgaagttataattttgttgtccctgtctcttgaaaacagtcacagtctcacagagatacaaatcctcatagcca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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