2024-09-29 03:46:16, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_105024 3330 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana root hair specific 8 (RHS8), mRNA. ACCESSION NM_105024 VERSION NM_105024.4 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 3330) AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S., White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L., Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F., Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R., Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J., Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B., Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J., Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L., Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S., Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X., Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J., Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G., Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H., Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H., Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T., Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G., Fraser,C.M., Venter,J.C. and Davis,R.W. TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 816-820 (2000) PUBMED 11130712 REFERENCE 2 (bases 1 to 3330) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3330) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 3330) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 5 (bases 1 to 3330) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). On Sep 12, 2016 this sequence version replaced NM_105024.3. FEATURES Location/Qualifiers source 1..3330 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /ecotype="Columbia" gene 1..3330 /gene="RHS8" /locus_tag="AT1G63450" /gene_synonym="F2K11.17; F2K11_17; root hair specific 8; XUT1; XYLOGLUCAN-SPECIFIC GALACTURONOSYLTRANSFERASE 1" /note="Encodes a xyloglucan-specific galacturonosyltransferase (XUT1) that forms the beta-d-galactosyluronic acid-(1->2)-alpha-d-xylosyl linkage." /db_xref="Araport:AT1G63450" /db_xref="GeneID:842651" /db_xref="TAIR:AT1G63450" CDS 1284..3278 /gene="RHS8" /locus_tag="AT1G63450" /gene_synonym="F2K11.17; F2K11_17; root hair specific 8; XUT1; XYLOGLUCAN-SPECIFIC GALACTURONOSYLTRANSFERASE 1" /inference="Similar to RNA sequence, EST:INSD:BP829488.1" /inference="similar to RNA sequence, mRNA:INSD:BX816851.1,INSD:BX815960.1,INSD:AK230135.1" /note="root hair specific 8 (RHS8); FUNCTIONS IN: catalytic activity; LOCATED IN: membrane; EXPRESSED IN: root hair, root; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G41250.1); Has 717 Blast hits to 713 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 686; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink)." /codon_start=1 /product="root hair specific 8" /protein_id="NP_176534.2" /db_xref="Araport:AT1G63450" /db_xref="GeneID:842651" /db_xref="TAIR:AT1G63450" /translation="
MSLSKHLQKLVHKRESKKQPNKKMPVSVSKLRRPRTSKKTETGNPEKTLKDPRTCCNNLFSIFSARSFLYRVPLTILFLFLIYLWSTSTTVISGNVVHICISSRKLTDLYCLTAGSQPALRAPVNNFTAPASEDVVTSKEEKNVFVLGKDGDKGFAENETFEGGKDSDKSTVGENLTINKNETFTGETSGERVSILNQDAKPIHEKNLDSVLDQDSLPKNEIDQDFIIDWDPETGEERYRYFKAKTEDEETGLKSTEEYIQIQRTWLSMGNNRKKPGSCEGKGVYVYDLPSKFNKDLLRECSDMVPWADFCNYFKNDAFGELMESMGKGWFRTHQYSLEPIFHSRILKHPCRVHNETQAKLFYVPFYGGMDVLRWHFKNVSSDVKDVLPIEIVKWLGSKKSWRKNSGKDHVFVLGKISWDFRRVDKYSWGSSLLEMQEMKNPTKLLIERNPWEVNDIAIPHPTYFHPKTDTDIAIWQNKILGKPRRSLISFAGAARPGNPESIRSILIDQCRSSPNQCRFLNCTDGGCDKSESVIELFRDSEFCLQPPGDSPTRKSIFDSLILGCIPVIFDPYSAYYQYTWHLPEDHRRYSVYINKEDVKLKRVNVIEKLMSKTLREREDMRSYIVHELLPGLVYGDSNAKFERFRDAFDITMDSLFKKIAKTV"
misc_feature 2115..3113 /gene="RHS8" /locus_tag="AT1G63450" /gene_synonym="F2K11.17; F2K11_17; root hair specific 8; XUT1; XYLOGLUCAN-SPECIFIC GALACTURONOSYLTRANSFERASE 1" /note="Exostosin family; Region: Exostosin; pfam03016" /db_xref="CDD:397245" ORIGIN
ttcgttgcttccctttttcctatttggaaaaggaaaatatttgccttattataagacaagagcagagaggacacaaataaagataagaagattaggattatactttgaaacgtgataatgagaactagacatggcagcaaaaggacaaagatagagaaggagtctcgagtaagtcaagtaacgtcggagacaagaagagattgcctgtgaagtccgtagctaagtttctcgttgtatccaagttattggcaacaattatccgcagtcgatatttcattagatcgtttccctttaggtcttcgcttcagccacatatactctttgcattcaaatatttagataaccaaaacggacgccagatttgtaacttcttcacgtattcctcgacatcaaccaagaatctaccgtattatttatctcttagtgcgacatgctcaatcccgagtccgtattgccgcaggatcaataatgttccttattacgttaatggtttgataagtcttggatgtggacgagaacaatttatatgcaaccctagcacaagtaagtacatacctttacccaaagtgaaatcaagaaaaaagattatccaaaactttttcgggtatgatccagtcaatggtgagtataaattaagtattgtgcatgtcggaaaaagtgaatgattactgggatggtccatcttttgaacatcaagtattcacattgggaggagttgatagatcatggagaatgattgaatgcaataacaatcttcttcatcgtcccaaaactaacggtgagtgcatcaatgggacaatgttgttgcaaggagaaaagtaaacatttctgcttcgttttcttctcgtatactatatgtcaactttgtgttttatagattccttttttttccggattggttgcataacccctactttgaattataaatttaagttgaccaaaaaaggccagctagatagatcttgtgttattatggatatattcactcgcatccaaagtcaaagtgaatattccacaaccatatataagagaagttgttttccaaaattttaacttggaggcacgttaatttaattcgttttaactaccaaaacttggattattaatttcactataagattcaatgaatactaaactaacaaacattgctatataatattaacatatgcatctatttctattatcaggtttccaaatcaaatgatttaagtttgttacaacaagacgtgcacactcattgatcattttactacaattatgtgacgacgtgagtgcatgtccagatgtccctatcaaaacatctacaaaagcttgtacacaaaagagaatccaaaaaacaaccaaacaagaaaatgcctgtctccgtctcaaagttgagacgaccaagaacgtccaaaaagaccgaaaccggaaatcccgaaaaaacacttaaagatcctcgtacttgctgtaataaccttttttcgatcttttccgccagatcatttctttatcgtgtacctctcacgattctctttcttttcttgatttatctttggtccacttccacgaccgttatctctggtaacgtcgttcatatatgcatctcttcgcggaagctcactgacctttattgcctcactgccggttctcagcccgctttacgtgcaccagtcaacaatttcactgcgccggctagtgaagatgtggtaacaagtaaagaagagaagaatgtttttgttcttggtaaagacggagacaagggtttcgcagaaaatgaaaccttcgagggaggaaaagattcagacaaatctacggtcggagaaaacctcaccatcaataagaacgaaactttcacaggagaaacctccggagaaagagtttccattcttaatcaagatgctaaacccatccatgaaaagaatcttgattccgttcttgatcaagattctttacccaaaaacgagattgatcaagatttcatcattgattgggatccagaaactggcgaagaacgataccgatatttcaaagcgaagaccgaagacgaggagaccggtctaaaatctacggaagagtatattcaaatacagagaacttggttatcgatgggaaacaaccgcaaaaagccgggatcttgcgaaggaaaaggtgtatacgtttacgatttaccatctaaattcaacaaagatttgttgagggaatgctccgatatggttccatgggctgatttttgcaactacttcaagaacgatgcgtttggtgaactgatggagagtatgggtaaaggctggttcagaacgcatcagtattcacttgagccgatatttcactctagaattttgaagcatccatgtagggttcataacgagactcaagcgaagctcttctatgtgcctttctatggcggtatggatgttttgagatggcatttcaagaacgtttcaagcgatgtgaaagatgttttgccgattgagattgttaaatggctcggatcgaagaaatcatggaggaaaaactccggaaaagatcatgtttttgttctcggaaagatctcttgggattttaggagggttgataagtattcttggggctcaagcttacttgagatgcaagaaatgaaaaaccctacaaagcttctcatcgaacgtaatccatgggaagtcaacgacatcgcgatacctcatcccacatacttccacccgaaaactgacaccgatatcgccatatggcaaaacaaaatacttgggaaacctcgtcggagcctaattagcttcgctggtgcagcaagacccggtaaccctgagagcatccggtcaatattgattgaccaatgcagatcgtctccaaaccaatgccggtttttgaattgtaccgatggaggctgcgataaatcggaatcggttatcgagcttttccgagattcggagttctgccttcaaccgcctggagacagtccaacaaggaaatcgattttcgattccctcatattaggttgtattccggtgatatttgatccgtacagcgcgtattaccagtacacgtggcatttaccggaggatcaccggagatattcggtgtatataaacaaagaagatgtgaagttgaagagagtgaatgtgattgagaagttaatgtcaaagactctaagggaaagagaggacatgaggagttacattgttcatgagcttttgcctggtttggtctatggagattctaatgctaagtttgagagatttcgagatgctttcgatattactatggatagtttattcaagaagattgcaaaaactgtataactttcgtttttcgtttgattttaattgtcaaattttcaaatgtagttcgttt
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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