2024-09-29 03:58:21, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_101329 1182 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana decoy (DECOY), mRNA. ACCESSION NM_101329 VERSION NM_101329.4 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1182) AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S., White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L., Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F., Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R., Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J., Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B., Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J., Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L., Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S., Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X., Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J., Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G., Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H., Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H., Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T., Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G., Fraser,C.M., Venter,J.C. and Davis,R.W. TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 816-820 (2000) PUBMED 11130712 REFERENCE 2 (bases 1 to 1182) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1182) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1182) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 5 (bases 1 to 1182) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). On Sep 12, 2016 this sequence version replaced NM_101329.3. FEATURES Location/Qualifiers source 1..1182 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /ecotype="Columbia" gene 1..1182 /gene="DECOY" /locus_tag="AT1G14620" /gene_synonym="T5E21.12; T5E21_12" /db_xref="Araport:AT1G14620" /db_xref="GeneID:838024" /db_xref="TAIR:AT1G14620" CDS 208..909 /gene="DECOY" /locus_tag="AT1G14620" /gene_synonym="T5E21.12; T5E21_12" /inference="Similar to RNA sequence, EST:INSD:DR360408.1,INSD:AV824260.1,INSD:EG446080.1, INSD:EG421473.1,INSD:EG495164.1,INSD:EG436242.1, INSD:EH877347.1,INSD:EL095632.1,INSD:DR365267.1, INSD:BP671916.1,INSD:ES154120.1,INSD:ES165016.1, INSD:ES160909.1,INSD:BP622396.1,INSD:EL322504.1, INSD:EG445877.1,INSD:ES164817.1,INSD:EG495162.1, INSD:EG421467.1,INSD:EG446085.1,INSD:EG446084.1, INSD:EL047295.1,INSD:ES113727.1,INSD:EH928773.1, INSD:ES194560.1,INSD:EG445080.1,INSD:EG446081.1, INSD:DR365268.1,INSD:EG445878.1,INSD:BP841827.1, INSD:EG420782.1,INSD:BP861261.1,INSD:AV785476.1, INSD:EL114949.1,INSD:AI998270.1" /inference="similar to RNA sequence, mRNA:INSD:BT015444.1,INSD:BT001031.1,INSD:U87586.1, INSD:AY127001.1" /note="DECOY (DECOY); CONTAINS InterPro DOMAIN/s: Ribosomal protein L46 (InterPro:IPR021757); Has 274 Blast hits to 274 proteins in 142 species: Archae - 0; Bacteria - 2; Metazoa - 83; Fungi - 120; Plants - 46; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink)." /codon_start=1 /product="decoy" /protein_id="NP_172914.1" /db_xref="Araport:AT1G14620" /db_xref="GeneID:838024" /db_xref="TAIR:AT1G14620" /translation="
MPRSSLRLLAKPLLESRRGFCTSSDKIVASVLFERLRVVIPKPDPAVYAFQEFKFNWQQQFRRRYPDEFLDIAKNRAKGEYQMDYVPAPRITEADKNNDRKSLYRALDKKLYLLIFGKPFGATSDKPVWHFPEKVYDSEPTLRKCAESALKSVVGDLTHTYFVGNAPMAHMAIQPTEEMPDLPSYKRFFFKCSVVAASKYDISNCEDFVWVTKDELLEFFPEQAEFFNKMIIS"
misc_feature 475..897 /gene="DECOY" /locus_tag="AT1G14620" /gene_synonym="T5E21.12; T5E21_12" /note="Mitochondrial ribosomal protein L46; Region: NUDIX_MRP_L46; cd04661" /db_xref="CDD:467546" ORIGIN
agcaaaccggattctggtttggttatgtaatccaattttaattagatcaaaccggattctggttatgtaaaccaataatttttcgattccgtcgaaattgttttacctgaaaggggatttggaaaaaccctctcactctcaggctcaagcgccggcgttcactctctaaccaaactcgatttcgtttctgggttgtgagattgagaaatgccgagatcatctttgcggctactagctaagcctctcttggagagcaggcgagggttttgcacgagctctgataagatcgtagcttcggtgcttttcgagagattgcgcgttgtgatacccaaaccggatcctgccgtttacgctttccaggagttcaaattcaattggcaacagcagtttcgtcgtagatatcccgatgagttcttagacattgctaagaacagagccaagggtgaataccaaatggactatgtacctgctcctagaattacagaggctgacaagaataacgataggaagtcattatatagagccctagacaaaaagttgtatcttctcatattcggcaagccatttggagctactagtgacaaacctgtttggcacttcccagagaaagtctatgattctgagccaactcttcgcaagtgcgcggaatctgctttgaagtcagtcgtaggagacctcactcacacatactttgttggaaatgctccaatggctcacatggccatacaacctacagaagaaatgcctgatttgccatcttacaagaggttcttcttcaaatgcagtgtagtagcagcatcgaaatacgacataagcaactgcgaggattttgtgtgggtaaccaaagacgagctcttggaattcttccctgagcaagctgaattcttcaacaagatgatcattagctgagccactcacaccacaaaaactcctattttcatcccttcttctccatcaatgtcatctctctggtattagacagtgtgagaaggtcaatgtaataaccaaacaaaaccatgtctctggttgtgacgtgaaggaaatttttgttgacagttgatctgaagtacgtagttgaatgtagttgtggcttctttctcaacctttttttatacatctctccgatagatattatattacgtatcttgataagaaatcacacactcgttgattcgagaacag
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]