2024-09-29 03:53:22, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001340217 2085 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs) family protein (AT3G63450), mRNA. ACCESSION NM_001340217 VERSION NM_001340217.1 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 2085) AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M., Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B., Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P., Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V., Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S., Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P., Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S., Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H., Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M., Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A., Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C., Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P., Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M., Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S., Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L., Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A., Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B., Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J., Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X., Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M., Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S., Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M. and Tabata,S. CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium; Institute for Genomic Research; Kazusa DNA Research Institute TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 820-822 (2000) PUBMED 11130713 REFERENCE 2 (bases 1 to 2085) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2085) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 2085) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003074). FEATURES Location/Qualifiers source 1..2085 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="3" /ecotype="Columbia" gene 1..2085 /locus_tag="AT3G63450" /db_xref="Araport:AT3G63450" /db_xref="GeneID:825520" /db_xref="TAIR:AT3G63450" CDS 859..1749 /locus_tag="AT3G63450" /codon_start=1 /product="RNA-binding (RRM/RBD/RNP motifs) family protein" /protein_id="NP_001327793.1" /db_xref="GeneID:825520" /db_xref="Araport:AT3G63450" /db_xref="TAIR:AT3G63450" /translation="
MDGYSETLVGKMCSRAAALMMGDDLHKLGIWRPERIDLSATACPASRQIYLTFPADSIFREEDVSDYFSTFGPVQDVRIPYQQKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKPYKEKGKVPDKTKPSRDIMDFQLGGRAFHEDLLWKRRFEERALELQSTRLMNLQLLDVEKQFQLNFDQTLLVSPRLVSNNQRVCTKENDEDTIKLPESLEDDRLVDSPIVSPKHHFLECGVAAETKGSGLSSPSFDQDESSTGTLKEPLKSLKCQMPRLSMMGITQGSSGPTTCRVGI"
misc_feature 1003..1212 /locus_tag="AT3G63450" /note="RNA recognition motif (RRM) found in Arabidopsis thaliana zinc finger CCCH domain-containing protein 46 (AtC3H46) and similar proteins; Region: RRM_AtC3H46_like; cd12458" /db_xref="CDD:409891" ORIGIN
agagagagagtgtgtgtgtgtgttttgttgtgaatttgattgcaaaaatccaaagtttgacgctttgacccactcacttgggagttggagcccagaagacacaacagtcactccactcttctttaactcttttttttatttaatttccccacaccacacgactcacgagggaagtggcaactttgatttttgcaagcagaggaggaagaagaagaagtagaaagaagcttaggtatggagtggagtggtacactggtactagagtgatgatggtggtaaggtagttgagaaagaaagcctttttagctttgctaaagtccaagacaagaaaccaaacatctttttgtacacaagacaagacaacaatagcagtgtttctttttcctgccaaagaaagattaagcgagagagagagagacaaggtctcatcgagcaaagagtgtgtttccatggatgtgtacgaagcaactaggatcgtgctctctagaatccagaacttagacccagctaatgcttccaagatcataggtcttctcctccttcaggatcacggtgagaaggagatgataaggttagctttcgggcctcagaatctccttcattctgtcatagccaaggccaaaaaggacctcgaagagcggctttctttcttgactccgagaaccgccgaagattttgagtccgatttagggttcggatggggtcaccgcaaagaggtgcttaggtccaactctgttccgccgagacttgccaatcagttcaccggttatccattctcccccaaaggtgtcaacttgcaacagagtgaagcccaaaggttggagcttttctttttctttatttttttccttcatctgtatggacgggtattctgaaactttggttggtaaaatgtgtagcagagctgctgctttgatgatgggcgatgacttgcacaaattgggaatatggaggccagagaggatcgacctctcggccacggcctgcccggcgtctagacagatctatctgactttcccggctgacagtatcttcagggaagaagatgtttccgactacttcagtacgtttgggccagttcaggacgtgaggataccttaccagcagaagaggatgtttgggttcgtgaccttcatgtacccagagactgtgaagagcattctggccaaagggaaccctcactttgtgtgtcattccagggttcttgttaagccttacaaggagaaaggcaaagtcccagacaagactaagccatccagggacattatggatttccagcttggggggagggcttttcatgaagatctgctgtggaaaaggaggtttgaagaacgagctcttgagctgcagagcacaaggctgatgaatctgcagcttctcgacgtcgagaaacagtttcaactcaatttcgaccaaacactacttgtttctccacgactagtttcaaacaatcagagagtgtgcacaaaagagaatgatgaggatacaatcaaacttccagagagcttggaggatgataggctggtggatagcccaattgtatcaccgaaacaccattttctcgagtgtggggtagctgcagaaacaaagggttcaggcttgtcgtcgccatcttttgatcaggatgagtctagtacaggtacattgaaagagcctctcaagtccttgaagtgccaaatgccgaggttatcaatgatggggataacacagggcagcagcggaccaacaacgtgtcgcgttgggatctaaacccattcaaaacagctaaccagtggaagagaagattaaccaaaaaaaaggaaaaaaggtgaagagcaattagggagacgtggatgtaagatagatagagaagaagatggggggaaggttggttgttgtaccattcattaaacaagagtgttagtaaatgagtcccgtgaatgttatgcaatggaccactccccacaggtgaccttaatattaattaatcatatataaaaaaagcacaagaagagattgattattcaccagaaaaagaaaggttggtttgtctatttttttgtttgtattcaatcactatatatttatctaagttaagttgtaaat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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