2024-09-29 04:02:36, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001332665 1163 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (LpxC1), partial mRNA. ACCESSION NM_001332665 VERSION NM_001332665.1 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1163) AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S., White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L., Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F., Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R., Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J., Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B., Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J., Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L., Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S., Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X., Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J., Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G., Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H., Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H., Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T., Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G., Fraser,C.M., Venter,J.C. and Davis,R.W. TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 816-820 (2000) PUBMED 11130712 REFERENCE 2 (bases 1 to 1163) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1163) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1163) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 5 (bases 1 to 1163) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). COMPLETENESS: incomplete on the 5' end. FEATURES Location/Qualifiers source 1..1163 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /ecotype="Columbia" gene <1..1163 /gene="LpxC1" /locus_tag="AT1G24793" /gene_synonym="AtLpxC1; F5A9.18; lipid X C1" /db_xref="Araport:AT1G24793" /db_xref="GeneID:839084" /db_xref="TAIR:AT1G24793" CDS 1..777 /gene="LpxC1" /locus_tag="AT1G24793" /gene_synonym="AtLpxC1; F5A9.18; lipid X C1" /inference="Similar to RNA sequence, EST:INSD:EL045360.1,INSD:ES066548.1,INSD:ES144851.1, INSD:BE527029.1,INSD:ES212294.1,INSD:EH926070.1, INSD:BE525768.1,INSD:ES176129.1,INSD:DR275515.1, INSD:ES152335.1,INSD:AV824197.1,INSD:BP844208.1, INSD:ES007923.1,INSD:EL213782.1,INSD:EL214806.1, INSD:EH955550.1,INSD:BE530179.1,INSD:EL300064.1" /inference="similar to RNA sequence, mRNA:INSD:AY094436.1" /note="UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G25210.2); Has 5025 Blast hits to 5025 proteins in 1409 species: Archae - 0; Bacteria - 2975; Metazoa - 1; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 1994 (source: NCBI BLink)." /codon_start=1 /product="UDP-3-O-acyl N-acetylglycosamine deacetylase family protein" /protein_id="NP_001319076.1" /db_xref="Araport:AT1G24793" /db_xref="GeneID:839084" /db_xref="TAIR:AT1G24793" /translation="
MRLPVTVKATKPSFLVIWIRYSSAASSPTVSLNPSGRLQQTLAGSVEVKGKSLHSGKFSTVKLNPEIAGAGRFFEFRSRFIPASIEFAQESPLCTTLLKDELKIRTVEHLLSALEAKGVDNCRIQIESESSDDREVEVPIFDGSAKEWVDAIQGVGINAAQNHDGESVEKMVAHVNKPVYVCKNDTFVAAFPALETRITCGIDFPQVPAIGCQWFSWRPIHESSFAKDIASSRTFCVYEEVERMREAGLIKGALSMDG"
misc_feature 115..>771 /gene="LpxC1" /locus_tag="AT1G24793" /gene_synonym="AtLpxC1; F5A9.18; lipid X C1" /note="UDP-3-O-acyl N-acetylglycosamine deacetylase; Region: LpxC; cl46501" /db_xref="CDD:480841" ORIGIN
atgagactccccgtcaccgtcaaagccactaagccgtcgtttctcgtcatttggatccgatactcctccgccgcgtcgtcgccgacagtctccttgaatccaagtggacgattacagcaaactctcgcaggatctgtggaagtgaaaggaaaatctctgcactccggtaagttctcgacggtgaagctaaatccggagatcgccggagctggtaggttcttcgagtttcgatccagattcatccctgcgtcgattgaatttgctcaggaatcgcctctttgcacgacgctgttgaaagatgagctcaaaatccgaaccgttgagcatttgttatcagctcttgaggcgaagggagttgataattgcaggattcaaatcgagagcgaaagttccgatgatcgagaagtcgaggtccctatttttgatggatcagctaaagaatgggtcgatgcgatacaaggagttggcataaacgcggctcaaaaccatgatggtgaaagtgtagagaagatggtcgcacatgtgaacaagcctgtgtatgtttgcaagaacgatacttttgttgctgcatttccggctctagagactcggatcacttgtggtatcgacttcccacaggtgcctgctataggctgccaatggttttcttggagacctatccatgagtcttcttttgcaaaggatatcgcatcatcaagaaccttctgtgtctatgaagaggtggagcgtatgcgtgaagcagggctcattaaaggagcgctgagcatggatggatgaatcctcctctgcggtttgatgatgaagcatgtcgacataagattcttgacctaatcggtgacctctcccttgtttcacggggcggaaatggaggactccccgtggctcacatagtcgcatataaggcgggtcatgcactgcacactgacttagcacgtcaccttaccatggactgaagagtatgtgctcgttgtcaaccatatcccgcaaaagccttgatcgtttctgtttctttttggattcgttatccaaagatggtaccaatgtgggatttttgtttgttcaatggaagatcattactcttgtgaatacagtaaaatttgtaacattaaactattttaggtactaatcatagggacattttaaccgatcaaactgttccaaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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