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2025-01-31 16:42:58, GGRNA.v2 : RefSeq release 227 (Nov, 2024)

LOCUS       XR_011258035            6813 bp    RNA     linear   MAM 28-OCT-2024
DEFINITION  PREDICTED: Ovis canadensis NRDE-2, necessary for RNA interference,
            domain containing (NRDE2), transcript variant X5, misc_RNA.
ACCESSION   XR_011258035
VERSION     XR_011258035.1
DBLINK      BioProject: PRJNA1175682
KEYWORDS    RefSeq.
SOURCE      Ovis canadensis (bighorn sheep)
  ORGANISM  Ovis canadensis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia;
            Pecora; Bovidae; Caprinae; Ovis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091251) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_042477335.1-RS_2024_10
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 10/22/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6813
                     /organism="Ovis canadensis"
                     /mol_type="transcribed RNA"
                     /isolate="MfBH-ARS-UI-01"
                     /db_xref="taxon:37174"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="lung"
                     /dev_stage="fetus"
                     /geo_loc_name="USA: Washington State University, Pullman"
                     /collection_date="2022-05-14"
                     /breed="Bighorn"
     gene            1..6813
                     /gene="NRDE2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 149 long SRA reads"
                     /db_xref="GeneID:138443231"
     misc_RNA        1..6813
                     /gene="NRDE2"
                     /product="NRDE-2, necessary for RNA interference, domain
                     containing, transcript variant X5"
                     /db_xref="GeneID:138443231"
ORIGIN      
attgtgaagcgacaggaactattttcacatacctcttgccagaaatcaggcccgagagaagggaaccagcagagaaggagaaaggagacagcagaggaaagcccgcgtgagcagcggtctcagcgcccctcggtcaggcctcaccgcttgctccgtgccttgagtctcctctcctgcgcagtggagaccgtggttcctcctgcaggggggtgttgtgagggttaaaatatgtaagttgcttaatctgttgcttggcctgcagtcaggccctccgtagctagattccctctcttctttcccttttttcccgtgctgtttctctttcctcttcaggagcttttcttccttcttccacccactcttttccacagatgtttgttaaactcctactgatgtgtgccaggcatcggtctcagtgctggggatacagcagtgagtgaaacgtcgggatgcgcattccagtatcccctcctcactacgatgcacttagcatcagggactaggatacagaatgtataaagaagtcttacaactcaatagtaaaaacacatcccaattaaagaatgggccaaagatttgaataactgtttctcctgaattacggagggccaagaaacgcgtgaaaagattctcgacactgagtcagcagggagatggaaaccaccatcacagtgaggaaaccccgcgcgcagcaggactggggtccggaggacaggagtgagctgccagcgacttggagaaggtggagcctcacgcgtgccttgctcaccggagcatacagcgtgtggccgatgcggaaagcagtctggcagtcctcaacgtgctgaacatgggttccgataggacctagcagctctgctcctagatggctgcccaagatgacggaaaacgtgggtccacatggaaaccggtgcctgaatgcttacagcagggtttgttaagcaggcacaaagtgggagcagcccgtgtccctcagctgacagtggataagatgtcccccaactgaagatggaaacccatcagctagaatcgcccttgttgttcagtcctgagtcgtgttcacctctctgcaacccgtgagctgcagcacgccaggcgtccctgtccttcaccatctcccggagctggcgcaaactcctgcccactgaactggtgatgccagcccgccatctcgtcctctgctgcgcccttctcctcatgcctccagtcttcctaagcatcaaggtcctttccaatgagatgattctgcagcagaatggagtgagattctgatacacgctgcatacagcacagatggaccttggagacattacgtcaagtgaacgaagccagttataaaagaacacgcattgaatggtcttgtttatagtaaaatattcaaaagaggcaactctatagcaagtagagcggggcttgcttatggctcgtgggggcggtgtgggagagcgggaggcgggtgaccacagacgggtgggggctccttggggagggtggagacgttctgaacttgcggtgagggtggcgggattctggatgcattgaggccactgactggcacgtgcgctgtgtcccagcgcagctgtcacacaggctgactcccccgctcgcgccccactgccgccgcttcgcgcgttctttctcctgagcgtggggttatgccctggctcccaaacagagcgggacgaggtccctgccctccacgggccgcctcgctgccaccccgcgtttccccttccagccaagactgctaaaggttagaagatgggtaatttagaaattgtaaattgtagaagagtcagaaacgaatggatgagcaggaagaactgttctcgggcgtttaacctcaccacccggagataatcatgcttcataccttgtatagttttagcattcatttagaaagttgacaccttccatttttgttttcgccgagtactgttatgagggaaaacttctgttgcgttcctctaaagattgctgttgtttagttgctgagttatgtccaactcttttgtgtccccgtggactgtgacatgcaaggctcctctgctcaagggatttcacaggcaagaatactggagtgggctgccgtttcctgttccagggaatattcccgacccaggggttggacccacgcctcctgccttggcagaattagactggctgagcaacccaagcttctgtgttggagccataacatctctgagccgacaatctcaagaggccaccgcagcccctgtttctgaagggtcaccgctgacaaggagtcctctgaaatcagagccttcagatgaaagtgacactaacagaaagcccagagaaacaagcaggaaaaagaagaaagagaaaaagaagaaaaggaagcttctgcgccacaagaaaaccaagagaaaacgtgggtcgtcgggcagcagtgggtctgagtcagacactgattctgaaaaggacagaccttccagaagcgccagagacaggaaaagggaatcagagaaacagaatcaaggaaataatgctgctgcggataccggacgtcactgtgtttggcttgaggacatccaggctctgacgggagaaaccttccgaatggataagaaaccggatcctgccaactgggagtacaagtctctttaccgaggagacgttgccagatacaagaggaaaggagactcctgcctcggcctcaacccgaagaagcagtgtatatcttgggaggggacttccacagaaaagaggcattcccgcaagcacgtggagcgctactttacgaagaagagcgtggggttaatgaacgtggagggcctcgccgtcagcaggcagcccggagctccgtcgtcggagccgctctcctttatcccggtgaagggcgtggacgacgcggctccccctgctaccagctggctgaaccctctggggatttatgatcaagccactacgcagtggttacagggacggggtccttcagagcaggagtccaggccaccagactcacagcccaacagagagggcgcgctcctcaaggccagggtggaggagtttaacaggaaggttcgcgagaaccctcgggacacagagctgtggatggcctttgttgctttccaggacgaggtcatgagaagtccaggcctctacgccgtggaggaaggagagccggagacacggaagcggtccctgcggctggtcctggagaagaagctggccgtcctggagcgggccatcgagagcaacccgagcagcgtggacctgaagctcgccaagctgaagctctgcaccgagttctgggagcccaccactctgctcaaagagtggcagaaactgatcttcttacatcccaacaacacagccctctggcagaaatacctgttgttttgccagagccagttcagcaccttctctgtatcaaaaattcagagtctgtacgggaagtgcttgagcaccctgtccgccgtgagggacggcagcatcgtctcccaccctgagctgcccggcaccgaggaggccatgtttgccctcttcctccagcagtgccacttcctgcggcaggctggccacaccgagaaggccgtgtctctcttccaggccatggttgacttcacgttcttcaagcctgacagtgtgaagggcctgcccaccaaaggccaggtggagttctttgagcccttctgggacagcggcgagccccgggccggggagaagggcgcccggggctggagagcctggatgcaccagcaggagcggggcggctgggtggccgtcggcccagatgatgacgacgacgagccggcggacgaggaccaggagattagagacaagacgctgccccggtggcagatctggctggccgccgagcggtcccgagaccacagacactggcagccgtggcgcccggacaaggctaggaagcagacggaggaagactgcgaggaccccgagagacaggtggtgttcgacgatctcggccagtctctgatccgactgtccagcccggatctccagtttcagctgatggcggccttcctgcagttcctgggggtgccttccggcttccgcgcccccgcctcctgcctctatctggccatggacgagaacagcatcttcgacaacgaactttatgacgaaaagcccttgactctccccgacctctcctgctccggcgtcggctgtgtgggctgcatggagcctctgggcggccggcgctggccccggggtcccagtcgagagggcgaggagtttatccgcaacgtcttccacctggcgctgcctctgtttgcaggcagggagcggtctcagctctgcgtctcctggctacggtacgagatcaccaaggtcatttggtgtctgcacactaaaaacaagaagagattaaagtcacagggaaagaactgcagaaaactagccaagaatctcctcaaggagccggacggccgcaacagcttctgcctctggcagcagtatgcgcttctggagtggttgctgggcaacacagaggacgcccggaaggtcttcgacgcagccctgggcaccgcagggagccggggcctggaggacccggagctctgcgagctcggcctgctctacgctgcgctggaggcggagctgtcgccgcccgtgggcggggccgccccagcccgggccgtgcacgtgctgaccgggctgactgagcgcggcccctacgggccctgcacgggacaggtctcggccgtgcgcgttctgaaggctcggaaggcgtacgaacacgcgctgcaggactgtctaggggagcgcggccctgacccgggcccccccgaccgcttcagccgcctggtcagcctggcgaagtgcttcctgctcttccagtacctgaccgtgggggtccacgccgctgggcgcgtctatgagcaggtgtctgcggagctccggggctctgtctccgcggagggcgccggcctggagggcgccctggaggccgtcaccctgatgcacaccagcctgctcaggttccacagcagggttgccgcccacccactggctccgctgcgagaggcgctctcagaggctttacggttgtacccgggcaaccagcttctctggagggcgtacgtgcagattcaaggcaagtcgcacagcgccagcaggaccagaagattcttccacgccatcaccaggtccaccgagctcctggagccgtggctgtttgcgattgaagcggagaggatgcggaagaggctggtggatgctgtgcagagggtggacggtagagaggtccatgccacccttcctgagaccggcctgacgcaccggatcagagccctgtttgagagcgccgtgcggagtaaccacgggagccagtgccccttgctgtggaggatgtacctgagcttcctggtaggacagacgccgggggtctgttgctgtgcagagcgctgttcctctaacagaagagcagggcaggggctcaggacccgggagatagactgactgaggaggggccgctcaggacccgggagggggctggtagactgaggagggggctcaggacccgggaggggcctggtagacagaggagggggctcggagcccgggaggggcctggtagagtgcctgaggagggccacctgggccgctggggccccggggtacctgtgtgtttctctgaattaacttcgtggaggcagcaacttggaaatcggtctaagagctttcactcgaaagagacctgagcctgttgctcttctgcttctgagaatgtccaggtcccgattcggttttgttactaaaaggtaagattcagtgtggactgtggtttttaaaagaggcatttccaaagcagctttgtttttacttggaggcgccacagccatttaattttgccaatgggttgtgcaggctgaaaggtggttcccgggccccacggggtctgagttggctctgtctttggttaaaggcctgacgtcgggctgcacttcctgtatcataacacatctactgccgagtttcatgggtttttagaaacagtcttccagccacttgagtgtctagacagtgctcacggctgttacgtcatatcaaagtgccctccgctgaccactgtacctttcagaagccctgaggggccttcctattacataaatatgtgtatctctgattatttccataggataatttctcagaagtttatcaaagtatttgaacattccccactgatgtttgacagagagggatgtaaaaaagacacggataggaaggtaggggctaagataagttcagggctagaagtccgggcctcccccagcctcttagagtccagagcttatctgggagcgcctcccctgagctctgaacggcctggacagcttgtctcaagacagcagctctcaggcacgctcccagcacgaacgggccccaggcggccccaggatgagctatcaccgaagtttctgtggtttcaacgtttattcttcacgctcaaaagcgtagatttcacgtgttgcctccttggtgtgggatgggagcctccagaagtccaggcgcctctgtggtgtccctgccccgggtggccatccttgctgggcggccatcggggtgtccctgctgggcggccgtcgaggtctgctcgtcgccaggcccctcagccgaaggaacggctcggatgctttcggttccagcgccagcgccctgtgagtctgtgccgctgagagacctttccacttacgacgcgggagagcttgcgaattcgccagcttaactccttccaggcttttccaggtttccttaggaaataaagaaagaagcaaaggtgtgttctacaaagcactgcagaattgtccttgggcaaag
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]