2025-01-31 16:42:58, GGRNA.v2 : RefSeq release 227 (Nov, 2024)
LOCUS XR_011258035 6813 bp RNA linear MAM 28-OCT-2024 DEFINITION PREDICTED: Ovis canadensis NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X5, misc_RNA. ACCESSION XR_011258035 VERSION XR_011258035.1 DBLINK BioProject: PRJNA1175682 KEYWORDS RefSeq. SOURCE Ovis canadensis (bighorn sheep) ORGANISM Ovis canadensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091251) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_042477335.1-RS_2024_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/22/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6813 /organism="Ovis canadensis" /mol_type="transcribed RNA" /isolate="MfBH-ARS-UI-01" /db_xref="taxon:37174" /chromosome="7" /sex="male" /tissue_type="lung" /dev_stage="fetus" /geo_loc_name="USA: Washington State University, Pullman" /collection_date="2022-05-14" /breed="Bighorn" gene 1..6813 /gene="NRDE2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 149 long SRA reads" /db_xref="GeneID:138443231" misc_RNA 1..6813 /gene="NRDE2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X5" /db_xref="GeneID:138443231" ORIGIN
attgtgaagcgacaggaactattttcacatacctcttgccagaaatcaggcccgagagaagggaaccagcagagaaggagaaaggagacagcagaggaaagcccgcgtgagcagcggtctcagcgcccctcggtcaggcctcaccgcttgctccgtgccttgagtctcctctcctgcgcagtggagaccgtggttcctcctgcaggggggtgttgtgagggttaaaatatgtaagttgcttaatctgttgcttggcctgcagtcaggccctccgtagctagattccctctcttctttcccttttttcccgtgctgtttctctttcctcttcaggagcttttcttccttcttccacccactcttttccacagatgtttgttaaactcctactgatgtgtgccaggcatcggtctcagtgctggggatacagcagtgagtgaaacgtcgggatgcgcattccagtatcccctcctcactacgatgcacttagcatcagggactaggatacagaatgtataaagaagtcttacaactcaatagtaaaaacacatcccaattaaagaatgggccaaagatttgaataactgtttctcctgaattacggagggccaagaaacgcgtgaaaagattctcgacactgagtcagcagggagatggaaaccaccatcacagtgaggaaaccccgcgcgcagcaggactggggtccggaggacaggagtgagctgccagcgacttggagaaggtggagcctcacgcgtgccttgctcaccggagcatacagcgtgtggccgatgcggaaagcagtctggcagtcctcaacgtgctgaacatgggttccgataggacctagcagctctgctcctagatggctgcccaagatgacggaaaacgtgggtccacatggaaaccggtgcctgaatgcttacagcagggtttgttaagcaggcacaaagtgggagcagcccgtgtccctcagctgacagtggataagatgtcccccaactgaagatggaaacccatcagctagaatcgcccttgttgttcagtcctgagtcgtgttcacctctctgcaacccgtgagctgcagcacgccaggcgtccctgtccttcaccatctcccggagctggcgcaaactcctgcccactgaactggtgatgccagcccgccatctcgtcctctgctgcgcccttctcctcatgcctccagtcttcctaagcatcaaggtcctttccaatgagatgattctgcagcagaatggagtgagattctgatacacgctgcatacagcacagatggaccttggagacattacgtcaagtgaacgaagccagttataaaagaacacgcattgaatggtcttgtttatagtaaaatattcaaaagaggcaactctatagcaagtagagcggggcttgcttatggctcgtgggggcggtgtgggagagcgggaggcgggtgaccacagacgggtgggggctccttggggagggtggagacgttctgaacttgcggtgagggtggcgggattctggatgcattgaggccactgactggcacgtgcgctgtgtcccagcgcagctgtcacacaggctgactcccccgctcgcgccccactgccgccgcttcgcgcgttctttctcctgagcgtggggttatgccctggctcccaaacagagcgggacgaggtccctgccctccacgggccgcctcgctgccaccccgcgtttccccttccagccaagactgctaaaggttagaagatgggtaatttagaaattgtaaattgtagaagagtcagaaacgaatggatgagcaggaagaactgttctcgggcgtttaacctcaccacccggagataatcatgcttcataccttgtatagttttagcattcatttagaaagttgacaccttccatttttgttttcgccgagtactgttatgagggaaaacttctgttgcgttcctctaaagattgctgttgtttagttgctgagttatgtccaactcttttgtgtccccgtggactgtgacatgcaaggctcctctgctcaagggatttcacaggcaagaatactggagtgggctgccgtttcctgttccagggaatattcccgacccaggggttggacccacgcctcctgccttggcagaattagactggctgagcaacccaagcttctgtgttggagccataacatctctgagccgacaatctcaagaggccaccgcagcccctgtttctgaagggtcaccgctgacaaggagtcctctgaaatcagagccttcagatgaaagtgacactaacagaaagcccagagaaacaagcaggaaaaagaagaaagagaaaaagaagaaaaggaagcttctgcgccacaagaaaaccaagagaaaacgtgggtcgtcgggcagcagtgggtctgagtcagacactgattctgaaaaggacagaccttccagaagcgccagagacaggaaaagggaatcagagaaacagaatcaaggaaataatgctgctgcggataccggacgtcactgtgtttggcttgaggacatccaggctctgacgggagaaaccttccgaatggataagaaaccggatcctgccaactgggagtacaagtctctttaccgaggagacgttgccagatacaagaggaaaggagactcctgcctcggcctcaacccgaagaagcagtgtatatcttgggaggggacttccacagaaaagaggcattcccgcaagcacgtggagcgctactttacgaagaagagcgtggggttaatgaacgtggagggcctcgccgtcagcaggcagcccggagctccgtcgtcggagccgctctcctttatcccggtgaagggcgtggacgacgcggctccccctgctaccagctggctgaaccctctggggatttatgatcaagccactacgcagtggttacagggacggggtccttcagagcaggagtccaggccaccagactcacagcccaacagagagggcgcgctcctcaaggccagggtggaggagtttaacaggaaggttcgcgagaaccctcgggacacagagctgtggatggcctttgttgctttccaggacgaggtcatgagaagtccaggcctctacgccgtggaggaaggagagccggagacacggaagcggtccctgcggctggtcctggagaagaagctggccgtcctggagcgggccatcgagagcaacccgagcagcgtggacctgaagctcgccaagctgaagctctgcaccgagttctgggagcccaccactctgctcaaagagtggcagaaactgatcttcttacatcccaacaacacagccctctggcagaaatacctgttgttttgccagagccagttcagcaccttctctgtatcaaaaattcagagtctgtacgggaagtgcttgagcaccctgtccgccgtgagggacggcagcatcgtctcccaccctgagctgcccggcaccgaggaggccatgtttgccctcttcctccagcagtgccacttcctgcggcaggctggccacaccgagaaggccgtgtctctcttccaggccatggttgacttcacgttcttcaagcctgacagtgtgaagggcctgcccaccaaaggccaggtggagttctttgagcccttctgggacagcggcgagccccgggccggggagaagggcgcccggggctggagagcctggatgcaccagcaggagcggggcggctgggtggccgtcggcccagatgatgacgacgacgagccggcggacgaggaccaggagattagagacaagacgctgccccggtggcagatctggctggccgccgagcggtcccgagaccacagacactggcagccgtggcgcccggacaaggctaggaagcagacggaggaagactgcgaggaccccgagagacaggtggtgttcgacgatctcggccagtctctgatccgactgtccagcccggatctccagtttcagctgatggcggccttcctgcagttcctgggggtgccttccggcttccgcgcccccgcctcctgcctctatctggccatggacgagaacagcatcttcgacaacgaactttatgacgaaaagcccttgactctccccgacctctcctgctccggcgtcggctgtgtgggctgcatggagcctctgggcggccggcgctggccccggggtcccagtcgagagggcgaggagtttatccgcaacgtcttccacctggcgctgcctctgtttgcaggcagggagcggtctcagctctgcgtctcctggctacggtacgagatcaccaaggtcatttggtgtctgcacactaaaaacaagaagagattaaagtcacagggaaagaactgcagaaaactagccaagaatctcctcaaggagccggacggccgcaacagcttctgcctctggcagcagtatgcgcttctggagtggttgctgggcaacacagaggacgcccggaaggtcttcgacgcagccctgggcaccgcagggagccggggcctggaggacccggagctctgcgagctcggcctgctctacgctgcgctggaggcggagctgtcgccgcccgtgggcggggccgccccagcccgggccgtgcacgtgctgaccgggctgactgagcgcggcccctacgggccctgcacgggacaggtctcggccgtgcgcgttctgaaggctcggaaggcgtacgaacacgcgctgcaggactgtctaggggagcgcggccctgacccgggcccccccgaccgcttcagccgcctggtcagcctggcgaagtgcttcctgctcttccagtacctgaccgtgggggtccacgccgctgggcgcgtctatgagcaggtgtctgcggagctccggggctctgtctccgcggagggcgccggcctggagggcgccctggaggccgtcaccctgatgcacaccagcctgctcaggttccacagcagggttgccgcccaccc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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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