2025-01-31 17:04:04, GGRNA.v2 : RefSeq release 227 (Nov, 2024)
LOCUS XR_011073660 3770 bp RNA linear MAM 19-SEP-2024 DEFINITION PREDICTED: Eschrichtius robustus NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X2, misc_RNA. ACCESSION XR_011073660 VERSION XR_011073660.1 DBLINK BioProject: PRJNA1160892 KEYWORDS RefSeq. SOURCE Eschrichtius robustus (grey whale) ORGANISM Eschrichtius robustus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Mysticeti; Eschrichtiidae; Eschrichtius. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_090824) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_028021215.1-RS_2024_09 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 09/18/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3770 /organism="Eschrichtius robustus" /mol_type="transcribed RNA" /isolate="mEscRob2" /db_xref="taxon:9764" /chromosome="1" /sex="male" /cell_line="mEscRob2 fibroblast" /tissue_type="Cells grown from a skin dart biopsy of epidermis and blubber" /dev_stage="adult" /geo_loc_name="USA: North Pacific Ocean, near Crescent City, California" /lat_lon="41.8349 N 124.2969 W" /collection_date="2016-03-18" /collected_by="Jeffrey K. Jacobsen" gene 1..3770 /gene="NRDE2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins" /db_xref="GeneID:137762983" misc_RNA 1..3770 /gene="NRDE2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X2" /db_xref="GeneID:137762983" ORIGIN
tgaaaaggcggtgcggcctgtgatcatggcgctgttccccgcctttgcgagtgttagtgaggcgcccgagagtgggagccccaggaaagaattagactggctgagcaacccaagcttttgtgttggaaccgtaacatctctgagccaacaaactgaagaggccacagcctttgtttctgaagagtcgctactgaccaggagtcctctgaattcagagccttcagatgaaagtgacactaacagaaagcccaaacaaacaagcagaaaaaagaagaaagagaaaaagaagaaaaggaagcatcagcaccacaagaaaaccaagagaaaacgtgggcagtcaagtagcagtggatctgagtcatatactgattctgaaaaggacagatcttccagaagcatcagagacagtaaaaaggaatcagagaaaccgaatcaagaaaataatgccactgctgatattggacgtcactttgtttggcttgaggacattcaggctctgacgggagaaaccttcagaacagataagaagccggatcctgcaaactgggagtataagtctctttaccgaggagatgtagcaagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgtatatcttgggaggggacgtccacagaaaagaagcggtcacacaagcatgtcgagcgctactttacaaagaagagtgtgggattaatgaacattgacggagttgccattagcagtaaaactgagcctgcctcatcggagtcgatctcatttatcccagtgaagggtgcagaggacgtggttgcccctgttacaagctggttgaaccctctggggatttatgatgaagccaccacgcagtggttacaaggccggggtccttcagggcaagaatccaagcagccagagtcacagcccaacagagagaacgtgcttctcaaggccaaggtggaggagtttaacaggagggtgtgggagaatcctcgggatgttcagctgtggatggcatttgttgcttttcaggacgaggtcatgagaagtccgggcctgtacgccattgaggaaggagagcaggaaaagcggaagcggtccctgaggctggttctggagaagaagctggccattctggagcgggccgtggaaagcaacccgagcagcgtggatctgaaactcgccaagctgcagctctgcaccgagttctgggagccctccactctggtcaaagagtggcagaaactgatatttttacatcccaacaatacagccctttggcagaaataccttttattttgccagagccagtttagcaccttttccatatcaaaaattcagagtctttatggaaaatgcttgagtactttgtctgctgttaaggacggcagcatcttgtcccaccctgagctgcctggcaccgaggaggccatgtttgccctctttcttcagcagtgccactttctgcggcaggctggtcactccgagaaggccgtctctctgttccaggccatggttgacttcaccttcttcaaacccgacagtgtgaaagacctgcctaccaaaggacaggtagaattctttgagcccttttgggacagtggagagcccagggctggggagaagggcgcccgaggctggagagcgtggatgcaccagcaggagcggggcggctgggtggtcgtcagcccagatgatgacgatgatgaaccggaagacgacgaccaggaaattaaagataagactctgcccaggtggcagatctggcttgctgctgagcggtcccgagaccacagacactggcggccgtggcgccccgagaagaccaagaagcaggcggaggaagactgtgaggacccagagagacaggtgttgtttgatgatatcggacagtctctgatccgactttccagcccggatcttcagtttcagctggttgcagcctttctgcagttcttgggtgtgccttccggcttcagccctccggcctcctgcctctatctggccatggatgagaacagcatctttgacaatgcactctacgatgaaaagcccttgacttttctcaacctttcatcttccggcgtcagctgtgtcggacgcacggaccagctgggttgccggcactggaccaggggtcacagtcgagagggggaggagttcatccgcagcatcttccacctcgtgatgcctttgttttcaggcaaggagaggtctcagctctgcttctcctggttacagtacgagattgcaaaggtcgtttggtgtctgcacactaaaaacaagaagaggttaaaatcacaaggaaagaactgcaaaaaactagccaagaatctccttaaggagccagacaaccgcaacaatttttgcctctggaagcagtacgcgcatctggagtggttgctcggcaacacagaggatgccagaaaagttttcgatacagcactcggcatagcagggagcagagaactgaaggaccgtgagctgtgtgagctcggtctcctctacgccgagctggaggtggagctgttgccggacgtgaggggggccgccccagcccgagccattcacgtattgaccggactgaccgagaatggggcctacgggccctacaccgggcaagtctcggccgttcacattttgaaagctcggaaggcttatgaacacgcgctgcaggactgtttgggggagagctgtgtctccgatccagctcccgccgattcctttagccgcctgattagcctggttaaatgctttatgctcttccagtatttgaccctagggatcgacgctgctgtgcggatatatgagcaggtacttgcaaaacaccaggtctctgtttccgcagagggccctggtctggagggcagtgccaacccgcagagcctgagcagcgtcctcgaggccgtcaccctgacacacacgagcctgctcaggttccacgtgaaagtcgccgtctacccgctggctcctctgcgagacgctctctcggaggctttaaagttgtatccgggcagccaggttctttggaggtcatatgtacagattcagaataagtcccacagtgccagtaagaccagaagattcttcgatgcgatcaccaggtctgccaaacccttggagccgtggttgtttgcaattgaagctgagaaaatgaggaaaagactagtggaaactgtgcagagggtagacggtagagaggtccacgccaccattcccgagactggcctgacgcatcggatcagagccctgtttgaaaatgcgatgcggagtgactacggcagccagtgccccttactgtggaggatgtatttgaattttttggtttccttaggaaacaaagaaagaagcaaaggtgtgttctacaaagcacttcagaattgtccttgggcaaaggtgctgtacctggatgccgtggagtacttccccgatgagatgcaggagatcctggacctgatgacggagaaggagctccgggtgcgcctgccgctggaggagctggagcttctgcttgaggactagagaccaggaggggagtggggcgtgcctccgaggcctcggcgcctgccccgtgggagccaggagacaccagaagagacgctgctgttgaacaactgccaccagctctgggggtgtgacggggcagcaggtattgaagtctgcagtccttttggtcagccagcttccctgacaaacacccggatcgaccgacttgctgctgctgagcggccggtgtggagggcccagaaacaggattcagtgttgtttg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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