GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-11-21 21:48:49, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XR_010718965            3661 bp    RNA     linear   INV 28-JUN-2024
DEFINITION  PREDICTED: Pocillopora verrucosa systemic RNA interference
            defective protein 1 (LOC131780885), misc_RNA.
ACCESSION   XR_010718965
VERSION     XR_010718965.1
DBLINK      BioProject: PRJNA1099672
KEYWORDS    RefSeq.
SOURCE      Pocillopora verrucosa
  ORGANISM  Pocillopora verrucosa
            Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia;
            Astrocoeniina; Pocilloporidae; Pocillopora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089321) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036669915.1-RS_2024_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/25/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3661
                     /organism="Pocillopora verrucosa"
                     /mol_type="transcribed RNA"
                     /isolate="sample1"
                     /isolation_source="Coral reefs"
                     /db_xref="taxon:203993"
                     /chromosome="10"
                     /tissue_type="Polyps"
                     /geo_loc_name="China: Spratly Islands"
                     /collection_date="2017-10-20"
     gene            1..3661
                     /gene="LOC131780885"
                     /note="systemic RNA interference defective protein 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 Proteins"
                     /db_xref="GeneID:131780885"
     misc_RNA        1..3661
                     /gene="LOC131780885"
                     /product="systemic RNA interference defective protein 1"
                     /db_xref="GeneID:131780885"
ORIGIN      
agatctgttgttagtaacacaacaaaccgaagagggctctgtctcgctaactcaaagtaacaccagattttcttcttaggatgttctttatcgttaatgcattcctgtttgctctcacttggtgcctccctgcctggggaaaacttcaggcaaattgttcgtccggcatgaatgtttcaaattccctgaatgtagtgacagagatcagtggcagactacctgacgataataatttacaacgttcctgcgtgttgaagttggacaaacctagtagctttttacgagtgagtactcgaaagaatgacaaccaaagaggtttcttgcatgtttttctgtaccacgccgatggatcatccttacttggtcacctgaacgtttcagaaccatcaacaatttggaacattctgaacatttgtcccaccggtgtgactaataatgtaaccacagggaagaagttgttatccgtggttggaaagggcagtgggctttccttcacagtgaaaatagctgaaggtgcatcagaaattgcgcttgatgaaccacacacagtcaatatccagggagatgaggtgagcgtgttccagttcattccaccccaaggtatctctgataaacaactggacattactgccacgtcacagtcaaaccttgctgcttacttaaaggtatcacacatatgcgaagatgtccaggaaaacttagaagttgtggattacaaaaaggaatctcttcgactttcctttgccacaaaaggacggataactttatccagagcttccattccctctttaactgattccgcctctagatggttcattggaattggtttgaagaacgtgtcaggtgacgtcaaatttagtgagtcaaaaaatgttactttaaagctgacaaggtcgtttgattataactatgccatacctgtttctgccctattactcgcatcacttctgggtggtatagtagtgtctatcgtggcacattttctttttaaagagtccctctctgagataaggtttggtggcgcaactgtaatggccaacatgaatggtgcgatgggtatacaactccagttccttccaccaggtgatcaagccaataataatcgaattcaaactaacctaaaaatttcatgttgcgatctgtgggaggtaatcagatatcactggttttcctttggtccaaagacctattcctacatcacaggtattgtgggtaatgtgcttatggtaggtgcttttcagttcgtgtttgcaaactggtatacgatgattcaggaagggaacagagataattgttactacaacgacttttgttatagagttacaaatcatgatattccgtttaacttgatgataagtaacttatcatatatagtccacggtctaatcttagctgtgtgggtactgatactggaaaccaaactaaatgtgcggttcaaaagcaacacgaccagccgcacaggcactggagccgccgtggcatggggatccgagctaccaaaccatgttctgttatgtcctgaaactaactttcatatttttgaaggaggtattccaaacacaatcatcgcagagcctgaaagcaaaaaaattattgccgcagcactgaaaaagaagtactgttattccattgggtatgcgttttcctgggctttggttttccagggattattttccactctttaccacttatgccctagcagcttcacatttcagtttgattcggcttttatgtttatcatggctggtttatctgtgctgtttttgtataatggctttgagcagaatcgttgtccttcttccgaaaatgtgaagtaccctgtgggtgcctctaatttcttccttttttttattgtgcctctctttatttttaactactttggtacgctctttaactctgattctgggcttagcaaaccattacagaactttttcttcgcattcctgatcatttggtggcttttgatggtttattgggctttttataagttaaatatccaccaaggagtatgccgaaatgcatgtaatgtgtttttattcattttgggtggcctggtagtacccttggggctctttttgtgttttttgttcaccaatctgtcacaggtgtttctgtatacctgcattatttgtagcatcattgctgtcctcgctaaacttaggccctggagaaagctgtgctgttgctgtgaatgcaggcgcaattgcccaacggccaaggtaatttatcaaaggcttttcatccctcactttcatcgttttggtcggagcttttggcgttttcaaatggctgcccaccacaagcaaatcgtcgacgccagaaaactcccgtgaccaaaacgaagaatgtgcttttctggaatttttcgattggcacgatctttggcattttttgtcctcctttggtgtcctaatggccacaattgttatcatgtttttaagttctaaacccgtgtaaaagtcgtaggcttcagaatatgtaatgcaagggagtgcaatgtaaaactccacataatagagaagttttcaactgcatgtcaaaattaatctaggattgctttgtttgctttatttcggtctgtgaatggtgtagaaaacgcgcacattcttcaaccaattagatgcaaaacaaaaataaatcgcgactttgtccaccgcgatttcccgcgctattggtagtttgcttgtataatttgtgttctcatcggctgttgataatgttaaccatcgttatgattgcttgttaggatttagaggttttggtttttcgatagtcagttgaaaactgttcttacagacgtggtgatgatggtgggatttagactataaagggggtaagtttctgaagaaagtgtgatgctgcgtcggtgagagagtataacagggtaatttagtgttatcaactaagttgatgatgtaaattggccactgtacagagttttagagctgacgttttgaatgtcagcccttcgtcagagcgaatggtttttcgtttttcgaatttagattatagccgcggtgaacatagtctcctttattagtaggagttaacattaggccttcatgtcaagtaaatatcggattgtgttggtttcactttggtgaaattaaaaggcattttgaatttaaaatggaagcatggggcaagtacaggtggtgatggacagtgggtccataaactcttcaatagtcgccaaaggacacttaatatatagaaggttttgaaaaattgatacgcgcgtaagataatcgcaaggtgcgtgttattgtttatcaaacccgttacaagcataataatcaagagagggattatgaccagacgagagttaaatgtacattgtaaataacttgcttttcaaactcgcattcgggtattcttaaaacttactgagccaagcgctgctaatcatctttttaacttcagctagcagtataaccagccagcatttacaaactacgtaatcttcatcggcattatttatattgaccaatattggccaccaatagaaagtaagatataatcgtcctagaagttacagtctctgttacaatactaggatacaagtttattaaagtattatgttagttaaacggtactttcgcgtttactgaatttaagaagaagtataataataaacagtgcgttggattgtatgctcatg
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]