GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-11-21 21:49:59, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XR_009864795            3810 bp    RNA     linear   MAM 10-JAN-2024
DEFINITION  PREDICTED: Lepus europaeus NRDE-2, necessary for RNA interference,
            domain containing (NRDE2), transcript variant X5, misc_RNA.
ACCESSION   XR_009864795
VERSION     XR_009864795.1
DBLINK      BioProject: PRJNA1061222
KEYWORDS    RefSeq.
SOURCE      Lepus europaeus (European hare)
  ORGANISM  Lepus europaeus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha;
            Leporidae; Lepus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_084848) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_033115175.1-RS_2024_01
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 01/05/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3810
                     /organism="Lepus europaeus"
                     /mol_type="transcribed RNA"
                     /isolate="LE1"
                     /db_xref="taxon:9983"
                     /chromosome="22"
                     /sex="male"
                     /cell_line="ZFMK-TIS-69753"
                     /tissue_type="Fibroblast"
                     /dev_stage="adult"
                     /geo_loc_name="Finland: Ilomantsi"
                     /collection_date="2018-10-25"
                     /collected_by="Jaakko Pohjoismaki"
     gene            1..3810
                     /gene="NRDE2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins"
                     /db_xref="GeneID:133751238"
     misc_RNA        1..3810
                     /gene="NRDE2"
                     /product="NRDE-2, necessary for RNA interference, domain
                     containing, transcript variant X5"
                     /db_xref="GeneID:133751238"
ORIGIN      
gacggcggaggcttcaaaccggcgcttggctgccgccgccatttctgtagaggggaagggcggagaaagctgcgttgatggcgctgttcccggcctttgcgggcgtgagtgaggcccccgatggtgggagctcccggaaagaattagactggctgagcaaccctagcttttgtgttggaagcctgccgtcgctgagccaccaaactgaggagcccacggccctggtttctgaaggggcaccactgccaaggagttctttgaaatcagaacctgcagatgaaagtgacaccgaccagaagctcatccaaacgagcagaaaaaagaagaaagagaggaagaagaagaggaagcatcagcatcacaggaagacaaagagaaggcgcaggcagtctggcagcagtgagtctgagccgaacactgattctgccgaggacgggccctccaggggcagcaggagggcctccgagaaaccaggtccaggaagtaactctgctgcggagactggacgtcgccttgtttggcttgaggatgtccaggctgtgagtggagaaaccttcagaacagataagaagcctgatcctgccaactgggagtataagtctctctaccgcggcgatatagcaagatacaggaggaaaggagattcctgccttggcataaaccccaagaaacagtgtatttcttgggaaggggcttccacaggaaagaagcggacccgtaagcatgtcgaacgctattttacaaagaagagtgtgggactgatgaacatcgatagcgtcgccattaccagtgaaactgcatctccctcggcggagccaggcccctttatcccagtgaaggactcggatgatgtgactgctcctgttgcagcctggctgaatcctttaggggtttatgatcagtcaaccacacagtggttacaaggacagggtccttccgagcaagagtcaaagcagcctgactcacaggcagacagagagagtgctgctctcaaggccaaggtcgaggagtttaacaggaaagttcgggagaatccttgtgatactcagctgtggatggcattcgttgctttccaggatgaggtcatgcggtgtcctggtctgtacgccatcgaggacggcgagcgggagacgcggaagaagtccctgaggctgctcctggagaagaagctggccgtcctggagcgggccgtcgagagcaacccgagcagcgtggagctgaagctcgccaagctgcagctgtgtgccgagttctgggagccctccgctctgctcaaagagtggcagaaactgatttttttacaccctaataatacagccctttggcagaaataccttttattttgccagagccagtttagcaccttctcagtatcaaagattcacaacctgtatggaaagtgcttgagtactttgtcggctgtgaaggacggcagcgtcttgtctcaccccgcgctgcctggcacggaagaggcgatgtttgcgctctttcttcagcagtgccactttctgcggcaggctggccactcggagaaggccgtcgctttgttccaggccatgattgacttcactttcttcaaacccgacagcgtgagagatctgccgaccaaagtgcaggtggaattctttgagcccttctgggatagtggagagccccgggctggggagaagggagcccggggctggagagcgtggatgcaccagcaggagcgcggtggctgggtggtcatcaacccagatgaggaggaggatgagccggaagaggacgaccaggagataaaggataagactctgcccaggtggcgaatctggcttgctgcggagcgttcccgagaccacaggcattggcggccctggcgccctgataagagcaagaagcagacagaggacgactgtgaggaccctgagagacaggtgctgtttgatgacgttggacagtctctcatcagactctgcagtcccgatcttcagttccgacttgtggaggcctttctgcaggtcctgggtgtgccttctggcttcacgcctcccgcctcctgcctttacctggctctggacgagaacagcatctttgagaacgggctttatgatgaaaagcccttgacgtccttcagccctttgttttctggtgtcagcagcgttggccggatggacccgctgggctgtcggcggtggaccaggggtcacggtcgagagggcgaggacttcatccgcaacatcttccacctcgtgatgcctttgttttcaggcaaggaaaagtctcagctctgcttctcctggctgcagtacgagattgccaaggtcatttggtgtcttcacactaaaaataagaagagattaaaatcacaggggaaaaactgcaaaaaactagccaagaatctccttaaggagccagaaaaccgcaacaacttttgcctctggaagcagtatgcgcatctggagtggttgcttggcaacaccgaggactccaggaaagttttcgatacggcgctcagcttggtgggaagcagagacctgaaggaccatgaactctgtgagcttagcctgctctatgcccaactggaggtggagacggagctgtcaccagactccacggggtccgccacggcccgagctgtccacgtattaacccgactgaccgagagcagtccctacgcgccctacacggggcaggtgttggctgtgcacattctgaaggcccggaaggcttatgagcacgcgctgcaggacagcctgagtgagagctgtggccccactccagcgcctgtcccttctgtcagttgcctgatcagcttggtcaggtgctttatgctcttccagtatttgactgtagggattgacgctgccgtgcgggtatacgagcaggtgtttgccaaactgaaagagtgtgttttcccggaaggctctggcctggaggacagagcgggctccccgagtctgagcggagccctggaagcggtcaccctgatgcacacgagtctgctgcagttccacatgcgagtcagcgtttaccctctggctcctctgcgagaggcactctcagaggctttacagctgtatcctggcaaccaggttctttggaggtcatatgtgcaggtgcaaaataagtcccacagtgccagcaagactagaaggttcttcgctgcaatcaccaggtctgccaaacccttggagccttggctgtttgcaattgaagctgagaagacgaggcgaaggctggtagagacggtccagagggtaggtggtggagaggtccactccacgatccccgagactggcctgacgcaccggatcacggccctgttcgagaatgcgctgcggcgtgatgatggcagccagtgccccctactgtggaggatgtatttgaactttttggtctccttaggaaatacagacagaagtaaaggtgtgttctacagagcacttcagaagtgcccgtgggcaaaggccttgtacctggacgctgtggagcacttccccaatgccatgcaggaggtgctggacctgatgaccgagaaggagctgcgtgtgcgcctgccgctggaggagctcgagctgctgctggaggaacagcgcactggagggtcctggcctgtggcaggtgcgtggaacagttctcattgatccctgagccgcacttggtgacgctgacctctggggaccagcagtgccgccgggaggagcagtgcatgctgtctgcccgccccagctgtgctcaatcaggatccgccccgacagtgttggcacctctgggacaaggatggctgtgcctgggggaggagctgccaccaccttctgtgccgtgtcccag
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]