2024-11-21 22:20:40, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XR_008803060 5282 bp RNA linear INV 18-MAY-2023 DEFINITION PREDICTED: Ostrea edulis uncharacterized LOC125651708 (LOC125651708), ncRNA. ACCESSION XR_008803060 VERSION XR_008803060.1 DBLINK BioProject: PRJNA970818 KEYWORDS RefSeq. SOURCE Ostrea edulis ORGANISM Ostrea edulis Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Ostrea. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_079168) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_947568905.1-RS_2023_05 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 05/10/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5282 /organism="Ostrea edulis" /mol_type="transcribed RNA" /db_xref="taxon:37623" /chromosome="5" gene 1..5282 /gene="LOC125651708" /note="uncharacterized LOC125651708; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 long SRA reads" /db_xref="GeneID:125651708" ncRNA 1..5282 /ncRNA_class="lncRNA" /gene="LOC125651708" /product="uncharacterized LOC125651708" /experiment="COORDINATES: polyA evidence [ECO:0006239]" /db_xref="GeneID:125651708" ORIGIN
acgtatctaagcacaaagtaattaatacttttcatactttcccaatttgaacattttatgtgtcaattttcccaattctacggactctggacccagtttgaaaatggtaggaaaacccctgcgaagactcaaatatgaaatcattttcaattagaggttaaaacatttagtgatgaattaattactggaatttatgaggactactgagacatgttaaaatggtgtcacatttgtcttcagattcaagaaacggactctatctggaaaaggaaaacaatatcaaagctcctctgtgagaagttggccaaggaaagcattcagaagaaagtggagattcattgtttttaccagatccagcagatcacagaaagcatctagtaggggagtttccaggattaagccagccagtagatgagactattatatcaaaaatacatttacttgtacacgagggcacacaaagcgttgatgaaacaaaaagacatttccgtctgtttgtaaaggatactatttcaccagggaacaccatctcagaatttaacagatgcttttaccccgccaataaggatgtaagaaatcacatttacagggcaccgagattttgccaggtagtttagaactgtgtgcattggttttgggagaatttgggctgtttaggctaaaatccattatgattggacagaatatgaacacacacatccaatacttcaaagatattatgtttgtggaggcagatattttgattgcatccactgtttagaatacatccttaagggaagcagactgccgcctttacccaatgatataatgattaatcataactatatctgttttgtaccaaatagaaagagcattgattcaggtcattttcaaatccactggcatacattgtactatacatgcaaccttttcaaactttacatttaagattttataaaggaaatatcttaatgtttcacatgtttacctttcactgtgctatgtaattcattatacctgccattatgtcagtcttcctgaacataatttgttttctgcaatttcattggccaagaggcttaatcctgggttatcagattgagcatttattagctcttctgagccaaaggctcaaagagctaatgctatggccatttgtgcggtgtgcgtaaactttttagaaaaagggctataactcaagaaccccttggccaatttctttcaaatttgttaaagggtatcattggcccaagggctttcatacatactaaataaagggatgtgaccctttaacaaggggagataatcaggaaaatacaaacaaaagtagtggttgctaaaaaatcttcttctcaagaaccacagggcagattatcaccaaacttacacataaggatgaggatatgttgtagattaaaaattgttcaaggcattaccctggggcaaagggcatggtctcaaggtcacttcaaagttgacctaaatttaaattttttttaaattccttaaatcttagatattttagtcattataaggactaggatcatcaaattttgacagttgatgcatcttaggaccttgtgtcaagttgtctcaaaagtaggtcacggtgacctactttttgaattttacaggtatttattttaaaattaattttgatgcatatcttggacactttgaagcctatgatcatcaaaacttgtcagttggtggatcatgggaccttgaaattcgtcaactgaaaaataggtcaccgtgacctactttctgaatttgatggcttatcatttatagatatattttaagttgttatttcaaataccgagaggtttagaatcatcaaatcttgtaagttgatgcatcttgaggccttgaaacatatttattaaaaaagtaggtcacagtgacctactttttgaattttgcagatattcaaatttcacattttcaattttagatgcatattttgggcactgtaaaacctaggatcatcaaactttgtcagttgatgcgtcttcagtcttcggtttgtgtcgaccaaaaagtaggtcaccgtgacctacttttggtatttgacagctaaattactatatttcacacactatttgacctacaatcatcaaactttgtcagttgatgcatcttgagtcttcggagtgtatcgaccaaaaagtaggtcactgtgacctacttttggcatttgacagttatatttatatatttcagtcactaattgacctacaatcatcaaactttgacagttgatgcatcttgagtcaatggagtgtgtcgaccaaaaagtaggtcaccttgacctacttttggaatttgacggctatatttatatatttcaaatactatttgacctacagtcatcaaactttgtcagttgatgggtcttgcatgttcgaagggtttcgaccaaaaagtaggtcaccttgacctacttttggaattggacacctatatttatacatttcagatactatttgacctacagtcatcaaactttgtcagttgatgcgtcttgcatgttcaaagggtgttgaccaaaaagtaggtcaccttgacctacttttggaattggacggctatatttatatatttcagatactatttgacctacagtcatcaaactttgtcagttgatgggtcttgcatgttcggagttcgctgaccagaaagtaggtcaccatgacctacgattggaatttgacagctatatttcaatattcagatactaattggcttaaaatcatcaaactttgtcagttgatatttcttgggttctcaaaatgtgtaaaccaaaaagtaggtcacattgacctactttttttgaattcttaggatttaactaaagatttagaatactaagaggctaagaatagaaatggtggggttgtacaatttatcagaagagcgattctaggcccttgggcctcttgtatttagtatcccattgattttgtcagccctatataaggagctgactcagatttactcactctgctaggttaaagaactctaaggtttgtacttttcacatgaatttcgtgttcgcctcttatcttttacatagagtaggaaatgaacataacattgagttagggaactatttagattttacattatatgtaaataccttagcagagtcaatttacttggttcagggtagtatcagatattactttctcagagtttaagtgtttaggctatctcaatgtttctatagttagccttgtcctatgttacttttagatgtatggaagccttttagtgttataacactatatttatgcccccattcaaagaagaggggcatattggtttgcacctgttggtcggtcggtagaccacatgttgtccgcttaatatcttaagaaccattcacttgatcgtaatatatttcatatgtgggttggttatgaaaagaagaggaccccaattgtttttcaggtcgaaatgtcaagggtcaatctactctggacataggaagacactgcctgctcaatatcttgagaaccctttgcttgacagacatcaaacttggtacactggtacatctcaaggagtagatttgaggtcatatggtcaaaggtcaaggggtaaactggacatagtaatatattgtctcttatgttttaagaattatttgcttgattgacaccaaacctggtacagcataaggagtagatgacccctattgatttttaggtcacttggtcaatccactcctgacataggaagatattgtttgctcaatatttcgaattgatgatactactatcaatcaaattatgcatatgtataacccttttcaattttgcaccatgggggcttatatgtaattgttttacaaacacctcatgttttatagtttgtgaaagcttgttagggtcataactttagattttcttattatggtacttgcccgtcagagactggacatattatggtatggtgttgtctgtccggaccttgtaagatgggatacagactgaaccgtaagctctagaatcttacaacttggtacatttgatcaccataaaaggaagatgcttattgttttttaaggtcaaggttgtaggttcacttaatgggaaaaccttgttcgagaaaattacagattcttgaactgagtattttgaggaaacattacatagaaagtacatgatttgtcaaatttctcccaatattcaactgagaaccttattctgcagagtatttgtatgggtatggaaaatgtgtatgtggctatgattttgatttttgtttaaatttttgttgttgaaaattacaggtttaaccgagtcagtttttgaggaaatatacatgtattaaataaatgacggtttgaccttttaactcctctcacagttttgaagctagggtctttgtaaataacttctttggtgttttagaatatttacagattgttgatcatggtcaattttggggaaatattttccgcagagctctagttgtctatctaccggcctcctgtcacttttaagtttaggagcttttattcatggaaagaaagtatgtgacaacctgatgatggctgatactatttaaagcctttttatacgcccgtcttaagatgggacgtattatggtatggcgttcatgtccgtccgtctgttagctttttcgtgtccgacccgtaacttaaatactacaaggcctagaatcatcaaactttgtctgtagatacatcttgggtagaaggtgtgtcgcacattaaaaccaggtcactgtgacttttcattaagaagatatccgtctgtccgtccgtctgttagctttttcgtgtccgacccgtaacttaaatactacaaggcctagaatcatcaaactttgtctgtagatacatcttgggtagaaggtgtgtcgcacattaaaaccaggtcactgtgacttttcattaggaagatatggccatatatggcaaaaacttgtccgactcataacttgaaaactattagacctagaatcaccaaaattggtcaactaatgcatcttaggtagaaggtgtgtcgcatcctactttaaggtcactgtgacatttaattaaggtgatataaaaaatgttttaatgggtacaatctatactgttaacaatatgtgacgggcatatcatgtgccgtggccgtgcactttattctagaaatggcatcagaaaaacaccctatgtaaccttttctgcttgtactcatttatttttattggaaaacttattacttgttatcagctactctaaaacaatattgacttgtgctataataaatttgtaaacttta
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]