2025-10-09 13:19:58, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_071234654 3268 bp mRNA linear INV 13-FEB-2025 DEFINITION PREDICTED: Haliotis cracherodii phosphatidylinositol-3-phosphatase SAC1-like (LOC139453025), mRNA. ACCESSION XM_071234654 VERSION XM_071234654.1 DBLINK BioProject: PRJNA1220611 KEYWORDS RefSeq. SOURCE Haliotis cracherodii (black abalone) ORGANISM Haliotis cracherodii Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Vetigastropoda; Lepetellida; Haliotoidea; Haliotidae; Haliotis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_027266265) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_022045235.1-RS_2025_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/12/2025 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3268 /organism="Haliotis cracherodii" /mol_type="mRNA" /isolate="W230" /db_xref="taxon:6455" /chromosome="Unknown" /tissue_type="Epipodial tissue" /dev_stage="adult" /collection_date="2020-07-20" /collected_by="Blythe Marshman" gene 1..3268 /gene="LOC139453025" /note="phosphatidylinositol-3-phosphatase SAC1-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins" /db_xref="GeneID:139453025" CDS 34..1806 /gene="LOC139453025" /codon_start=1 /product="phosphatidylinositol-3-phosphatase SAC1-like" /protein_id="XP_071090755.1" /db_xref="GeneID:139453025" /translation="
MAVHDSLRLHITSDKFIIEPTDAGANELLVIDRVSQEITLQVNQGQIPAAAITKLIYGVVGIIRLVAGPYLIVMTKREKVGEINGHTIWRLIDTETHSYKRTMLHLTEQQASHNRSYLSMVELILKTDAFYFSNTFDLTHSLQRLQNTSSDFSSLALHERADQRFVWNGHILRELAQQPELGQYCLPMVHGFLSINSTSINNKSFDYIVISRRCIYRAGTRFYVRGVDTEGQVANFVETEQIVQCDGIRCSFVQTRGSIPLFWSQKPNLKRMPLPVINSATNHMDGFQRHFDDQIYNYGKQVLINLVNQKGYELQMEQAFAQTVVNSQNSNIRYESFDFHKECSKMRWDRLSILTDKLAEERRQFGYFMHGKDGSVVSSQQGVFRTNCMDCLDRTNVVQSLLAKDNLLDQLQRLGVLAQGARVPEKCQFDTVFKNVWADNADTLSKQYAGTGALKTDFTRTGKRTKMGLMMDGWNSLIRYFRNNFQDGFRQDAIDLFLGNYQVEETEGLTTPSPLTVERDWKFYAIPVIFLVAMAMFVISILLPDEHFSEQVMYVFFWGAASAIALTVMFAFGSEYVDQPKLTQVKTKTE"
misc_feature 199..1662 /gene="LOC139453025" /note="Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]; Region: COG5329" /db_xref="CDD:227637" ORIGIN
cttgatggaggagcattccacgtcaccgtgaaaatggcggtgcacgattcccttcgattacatatcacatctgacaagttcatcatagagccaactgatgcaggagctaatgagcttctggtcatcgacagggtgtcccaggaaataacactacaagtgaaccagggccagattccggccgctgccatcaccaaactcatctatggagttgtgggaatcatccgacttgtggcgggtccgtatctgattgtgatgacaaagcgggagaaggtgggtgagatcaatggacacacgatatggcggctgatcgacacagagactcactcctacaagagaaccatgctgcacctcacagagcaacaggcctcccacaaccggagctacttgtccatggtggaactgatcctgaagaccgatgcattctacttctccaacacgttcgacctgacacactcactccagcgcctccagaacaccagctccgacttctcatcactcgccctgcatgagagggccgaccaaaggtttgtgtggaatggccacatcctgagagagttggcccagcaaccagaactggggcaatactgccttcccatggtgcatggcttcctcagcatcaactccaccagcatcaacaacaagagcttcgactacattgtcatctcccgaaggtgtatatatcgagctgggacccgattctacgtccgaggagtagacactgagggccaggtcgccaacttcgtagaaactgaacaaattgtgcaatgtgatggcatcagatgttcttttgtacagacgcgtggctccatcccgctgttctggagccagaaacccaacctgaagcggatgcccctgccagtcatcaacagtgccactaatcatatggatggcttccagcggcactttgacgatcagatttacaactatgggaaacaagttctcattaatctcgttaaccagaaaggctatgagcttcagatggaacaagctttcgcccagacagtggtcaactcccagaactctaacatcagatacgagtcttttgacttccacaaggagtgcagcaagatgcgatgggaccgcctgtccatacttacagacaagctggctgaggagaggagacagtttgggtacttcatgcatgggaaggacggtagtgtggtgtcatcacaacagggtgtattcagaaccaactgcatggactgtttggaccgcaccaacgttgtccagagtcttctggctaaagataacctacttgaccagctccagagactgggagtccttgcacagggagcacgggtcccggagaagtgtcagttcgacacagtcttcaagaacgtgtgggccgacaatgcagacactctctccaagcagtatgccggaactggtgccttgaagacagacttcacaaggacggggaagaggaccaagatggggctgatgatggatggctggaactccctcatcaggtacttccgcaacaacttccaggacggtttccgacaggatgccattgatctgttcctgggcaactaccaagtggaggagacggagggcctgaccacaccctcccccctcacggtggagcgggactggaagttttatgctatacctgtgatatttctggttgctatggcaatgtttgtgatcagcatcctgctgccagatgaacacttcagtgaacaagtgatgtatgtgtttttctggggagctgcctccgcgattgccttgacggtcatgtttgcattcggcagtgaatatgtggaccaacccaaactcacccaagtcaagaccaagacagaatagctatatgatcggggaatattcattgtgtgatgcagtctttaggctttacagtgttgtgacgatgctcttctagcggtcaccggatggatatcatgctgttgattgaacccaccctatgacgtgcgggcatgctttatgtaaaacacactttggtaattcaagatgagaacagcgcggttttagtaatctgttctcaaagaaattagtttcattatcattcttggcattgaacagtcacacatttaatttgttgttgttattgtccctggcaaagacatttacaaagtcggagtcttcagcaggcctgaacaaaagtgtccggatgaattcatttcctgggtcatggaacaggggtcatggaacaaaacattttgacattttccttaattttgtactttgtggcatggattgagatttgagaagcgactgttaaacaagttgatgcaggtttacaaagcgtattctgtagttcctctgtgactgtagtaggaccactggttgacatgtcgtagtttgtctcagtgaacgtactacagatagtacctttacactcctacattacaccttgaaagtgttgtatgtgtgtcaaagtgaaggacttatcgacaggcatcggaaccagagtctattgtgctcttcctgtttgtagtcctatctggggtcagattgacagatgtattgacatttaaacagtgacattcctgtaacacaattaaattaattctgacacttgttgtctgtagtagccatgttctccctcagagtggaggatccgtaccaacacactggaacagcaggtcactctgacctccgctaacacacaacagacagcaggaacagcaggtcactctgacctccgctgcacacagcagacagcaggaacagcaggtcactctgacctctgctgcacacagcagacagcaggaactgtaggtcactctgacctccgctgcacacagcagacaggaactgtaggtcgctctgacctccgctgcacacagcagacagcaggaactgtaggtcaccctgacctccactgcacacaacagacagcaggaacagcaggtcactctgacctccgctgcacacagcagacagcaggaacagcaggtcactctgacctccgctgcacacagcagacagcaggtactgtaggtcactctgacctccattgcacacagcagacagcaggaacagcaggtcactctgacctccgctgcacacaacagacagcaggaacagcaggtcactctgacctctgctgcacacagcagacagcaggaactgtaggtcactctgaccaccgctgcacacagcagacagcaggaactgtaggtcactccgacctccacacagatgacagtagaatacaaagcctctctatagttactgacttgttggtatgagtatatctacctgtatatctatctgtattggaggctagctagttactgcagggtac
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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