LOCUS       XM_070469787            5392 bp    mRNA    linear   MAM 18-DEC-2024
DEFINITION  PREDICTED: Odocoileus virginianus NRDE-2, necessary for RNA
            interference, domain containing (NRDE2), transcript variant X2,
            mRNA.
ACCESSION   XM_070469787
VERSION     XM_070469787.1
DBLINK      BioProject: PRJNA926659
KEYWORDS    RefSeq.
SOURCE      Odocoileus virginianus (white-tailed deer)
  ORGANISM  Odocoileus virginianus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia;
            Pecora; Cervidae; Odocoileinae; Odocoileus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_069679) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_023699985.2-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/15/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5392
                     /organism="Odocoileus virginianus"
                     /mol_type="mRNA"
                     /isolate="20LAN1187"
                     /db_xref="taxon:9874"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="tongue muscle"
                     /ecotype="Illinois"
     gene            1..5392
                     /gene="NRDE2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein"
                     /db_xref="GeneID:110141788"
     CDS             722..3499
                     /gene="NRDE2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2 isoform X2"
                     /protein_id="XP_070325888.1"
                     /db_xref="GeneID:110141788"
                     /translation="

MSEAGLSVSRQPVALSSQPLSFIPVGGVDDAAPPAASWLNPLGIYDQATTQWLQGQGPSEQESRPPDSQPDRESTLLKARVEEFNRKVRENPRDTELWMAFVAFQDEVMRSPGLYAVEEGEPETRKRSLRLVLEKKLAILERAIESNPSSVDLKLAKLKLCAEFWEPATLLKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFSVSKIQSLYGKCLSTLSAVRDGSIVSHPELPGTEEAMFALFLQQCHFLRQAGHSEKAVCLFQAMVDFTFFKPDSVKGLPTKGQVEFFEPFWDSGEPRAGEKGARGWRAWMHQQEWGGWVAVSPDDEDEELEDEEQDIRDKTLPRWRIWLAAERSRDRRHWRPWRPDKARKQTEEDCEDPERQVLFDDLGQSLIRLSSPDLQFQLIAAFLQFLGVPSGFSPPASCLYLAMDENSIFDNELYDEKPLTFLDLSCSGVGCVGRMDPLGGRRWPRGPSREGEEFIRNVFHMVLPLFAGRERSQLCVFWLRYEITKVIWCLHTKNKKRLKSLGKNCKKLAKNLLKEPDNRNSACLWQQYAHLEWLLGNTEDARKVFEAALGTAGGRGLADTELCELGLLYAALEAELAPPVGGAAPVRAVRVLTGLAERGPSGPCPGQPSAVHVLKARKAYEHALQDCLAERRGPDPGLPDCLSRLVSLVKCFMLFQYLTVGVGAAARVYEQVFAGLRGSVSAEGAGLEGALEAVALMHTSLLRFHGRVAAYPLAPLREALSEALRLYPGNQLLWRSYVQIQSKSHSASRTRRFFHAVTRSAKHLEPWLFAIEAERMRKRLVDAVQRVDGREVHATLPEIGLTHRIRALFESTIRSAHGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKALYMDAVEYFPDEMQEVVDLMTEKELRVRLPLEELELLLED"

     polyA_site      5392
                     /gene="NRDE2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

gcccaggggagacgatggcgtcccctctcctgtcacacgcggtgtggcctgaggggatgcgatgacatgccgtgcagagcccgggggagacgatggcgccccctctcctgtcacgcggtgaggcctgaggggacgcgatgacacgccgtgaagagctcgggggagacaatggcgtcccctctcctgtcacacgcggtgcggcctgaggggatgtggtgacatgctgtgtagagcccaggggagacgatggcgtcccctctcctgtcacacgcggtgcggcctgaggggatgtggtgacatgctgtgcagagcccaggagagacgatggcgtcccctctcctgtcacacgcggtgcggcctgaggggacgtggtgacatgctgtgcagagcccaggggagacgatggcgtcccctctcccatcacacgcggtgtggcctgagggggcacggtgacacgctgtgcagagctcgggggagctaaggtctaggagacaggcgtgttctgaaattcctgagacgtagatgaatggcacagtagaggaaaagtcctcggacttctctgaatagaaacagtttgaagggaagatacaagaggaaaggagactcctgcctcggcctcaacccgaagaagcagtgtgtgtcttgggaggggacttccacagaaaagaagcgttcccacaagcacattgaacgctacttcacgaagaagagcgtggggttaatgagcgaggccggcctttccgtcagcaggcagcctgtagctctgtcatcccagccgctctcctttatcccggtggggggcgtggacgacgcggctccccctgctgccagctggctgaacccgctggggatttacgatcaggccacaacgcagtggttacagggacagggtccttcggagcaggagtccaggccaccagactcacagcccgaccgagagagcacgctcctcaaggccagggtggaggagtttaacaggaaggttcgggagaaccctcgggacacggagctgtggatggctttcgttgccttccaggacgaggtcatgagaagtccgggcctctacgccgtggaggaaggagagccggagacgcggaagcggtccctgcggctggtcctggagaagaagctggccatcctggagcgggccatcgagagcaacccgagcagtgtggacctgaagctcgccaagctgaagctctgcgccgagttctgggagcccgccactctgctcaaagagtggcagaaactgatcttcttacatcccaacaacacagccctctggcagaaatacctgttgttttgccagagccagttcagcaccttctctgtatcaaaaattcagagtctctacgggaagtgcttgagcaccctgtctgccgtgagggacggcagcatcgtctcccaccccgagctgccgggcaccgaggaggccatgtttgccctcttcctccagcagtgccacttcctgcggcaggcgggccactccgagaaggccgtctgtctgttccaggccatggtcgacttcacgttcttcaagcccgacagtgtgaagggcctgcccaccaaaggccaggtggagttctttgagcccttctgggacagtggcgagccccgggccggggagaagggcgcccgaggctggagagcctggatgcatcagcaggagtggggcggctgggtggccgtcagcccagatgacgaggacgaggagctggaggacgaggagcaggatatcagagacaagactctgccccggtggaggatctggctggccgccgagcggtcccgagaccgcaggcactggcggccgtggcgcccagacaaggccaggaagcagacggaggaggactgcgaggatcccgagcgacaggtgttgtttgacgatctcgggcagtctctgatccgactttccagcccggatctccagtttcagctgattgcggccttcctgcagttcctgggggtgccttctggcttcagccctcccgcctcctgcctctatctggccatggatgagaacagcatcttcgacaacgaactttatgacgaaaagcccttgactttcctcgacctctcctgctccggcgtcggctgtgtgggccgcatggaccctctgggtggccggcgctggccccggggtcccagtcgagagggcgaggagtttatccgcaacgtcttccacatggtgctgcctctgtttgcaggcagggagcggtctcagctctgcgtcttctggctacggtacgagatcaccaaggtcatttggtgtctgcacactaaaaacaagaagaggttaaagtcactgggaaagaactgcaaaaaactagccaagaatctcctcaaggagccagacaaccgcaacagcgcttgcctctggcagcagtacgcgcatctggagtggttgctgggcaacacggaggatgcccggaaggtcttcgaggcggccctgggcaccgcgggcggccgcggcctggcggacacagagctctgtgagctcggcctgctctacgcggcgctggaggcggagctggcgccgcccgtcggcggggcggcgcctgtgcgcgcagtgcgcgtgctgacggggctggccgagcgcggcccctcggggccctgccccggtcagccgtcggccgtgcacgtgttgaaggctcggaaagcgtatgaacacgcgctgcaggactgcctggcggagcgccgcggccctgacccgggcctgcccgactgtctcagccgcctggtcagcctggtgaagtgcttcatgctcttccagtacctgaccgtgggggtcggcgccgctgcgcgcgtctacgagcaggtgtttgcagggctcaggggctccgtctccgccgagggtgccggcctggagggcgccctggaggccgtcgccctgatgcacaccagcctgctcaggttccacggccgggttgccgcctacccgctggctcccctgcgagaggcgctctcagaggctttacggttgtacccgggcaaccagcttctctggaggtcgtacgtgcagattcagagcaagtcccacagcgccagcaggaccagaagattcttccacgccgtcaccaggtccgccaaacacctggagccgtggctgttcgcgattgaggcggagagaatgaggaagagactggtggacgccgtgcagagggtggacggcagagaggtccacgccacccttcccgagatcggcctgacgcaccggatcagagccctgtttgagagcaccattcggagcgcccacggcagccagtgccccttgctgtggaggatgtacctgaacttcctggtttccttaggaaataaagaaagaagcaaaggtgtgttctacaaagcactgcagaactgtccttgggcaaaggcgctgtacatggacgccgtggagtacttccccgacgagatgcaggaggtcgtggacctgatgacggagaaggagctgcgggtgcgcctgccgctggaggagctggagctgctgctggaggactagacgccgggtggggcccgccctgggggccgggaccagccccaagacacgggcatgcgtgtgcccagacctctgccctgcagggtcttccctgtcagtgtctggactgccagcctcacctcttgcacagtttttgcacatgcagatgacacaaagatgttgttttgcacatacgtgtgaatatgtatgtacacagacaagaatcacgccaaagctgtcacgctccatgtgggtccttttggcccactctcccctgcccagcccgggtgaaggttcttcctgttggcatccttagggatcttgccacgtctcctggctcttgcaatcgaaagaaaggtctggttactcaccaggccttcctccctgcagctggtgagcctgctctgcccctcttcagaccaaagcagcagggaatcgggtacagctcggagtcctcagctgcaccacgcatgtccttcctgttcccgaagctccgctcgcggacctctcgcctgcggactcggcgggcagggtcgcctggagttcgtgcccgtggagaccctgggcccgcggccctgccgagtcagatcaggctccaagagggaggacccctgtcgggactgaacaaacagggaccccgctgcaagggagcgggcccgggtccagttgcagagagcgcgtcctgctcctccgtggcgaacccgtctctgcctcagagatgccgaacgttcgcttccggccgcgtcagccgcgctgcgctcgttcccatttccaagagcggtgatcgacagccggcggagcggaaatgctgtcttctccgaggtcctgcttttttaaacacagtggacttctctgcgttgcgtttctttttttttttttttggacactttgggtattatacacccatcttaccatggaattgttaggggaagacatttttttttttccccatttatttttattagttggaggataattactttacatcattgcagtagtttttgtcatacattgaaatgaattagccatggatttacatgtattccccatcccggtcccctctcccacctccctctccacccgatccctctgggtcttcccagtgcaccaggcccgagcacttgtctcacacacccaacctgggctggtgatctgtttcaccctagataatatgcatgtttcaatgctgttctcttgaaacatcccaccacgctctctagaactgctgagagcgaatttcactggccgctcgtccagaaaatagggcgttgtggaacctgggctagaaacggagggacaccggctgggggcaagggccgcactgagcagagcgcggggcggtgccggcgattctgaactccggtgagagggacaggtgctgaccgccgcagggctgcccctttgagaccccgtctcagcagcaccagtcctcccttcctgccccagaccctccaggggccgccccggccggggggtcgtagccttgtggcctccacagcagaggtggccggccgtgtgctcacgagccagcggctgctgtctagagctgccttcggcggaactgtgccgcagggacgcagcctgcagtgccccgggtcccccagaggcttccccacacctgggcccacccactccggccacggagcacccagcgtgtggacaggactccgtgttaagagaaagaacgctttattgggacgctggcagcccgccagggccctacatgcgcgctcgggagggacgcgggacgctctgccaaccgcggccagtggcacatggcgcccaggcagctccctcccaacctcaccccaggggccaggaccctcccagcctttcctggaagttaactctggtccactacagatagagcccctccggggtgccttcctgttttttataaagaacattttccttcga

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