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Previous release (v1)
2025-10-27 20:27:57, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_070189678 570 bp mRNA linear PLN 05-DEC-2024
DEFINITION PREDICTED: Nicotiana tomentosiformis uncharacterized protein
(LOC138901881), mRNA.
ACCESSION XM_070189678
VERSION XM_070189678.1
DBLINK BioProject: PRJNA257218
KEYWORDS RefSeq; includes ab initio.
SOURCE Nicotiana tomentosiformis
ORGANISM Nicotiana tomentosiformis
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; asterids; lamiids; Solanales; Solanaceae;
Nicotianoideae; Nicotianeae; Nicotiana.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_090822) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_000390325.3-RS_2024_10
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.3
Annotation Method :: Best-placed RefSeq; Gnomon;
cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 10/03/2024
##Genome-Annotation-Data-END##
##RefSeq-Attributes-START##
ab initio :: 100% of CDS bases
##RefSeq-Attributes-END##
FEATURES Location/Qualifiers
source 1..570
/organism="Nicotiana tomentosiformis"
/mol_type="mRNA"
/bio_material="USDA:TW 142"
/db_xref="taxon:4098"
/chromosome="11"
/tissue_type="leaf"
gene 1..570
/gene="LOC138901881"
/note="uncharacterized LOC138901881; Derived by automated
computational analysis using gene prediction method:
Gnomon. Supporting evidence includes similarity to: 1
Protein"
/db_xref="GeneID:138901881"
CDS 1..570
/gene="LOC138901881"
/codon_start=1
/product="uncharacterized protein"
/protein_id="XP_070045779.1"
/db_xref="GeneID:138901881"
/translation="
MSDEEQKRLEWFRRLNPPSFSGFELEDVQNFLDRCQQILRTAGILETSGWEAYELSSPVGAAPLTWHDFSNLFLEKFAPSTRKKELCRQFEQLCQEGVSMTQYEMRFSKLAYHTISLVPTERDSIRRFIDVHNYGLRFVMTREIASGARFDEVVDIAKRLEQVRSQECEERKEKRPPGLGSFSGVSFGG"
misc_feature 148..411
/gene="LOC138901881"
/note="Retrotransposon gag protein; Region:
Retrotrans_gag; cl46289"
/db_xref="CDD:480629"
ORIGIN
atgagtgatgaggaacagaagaggctagagtggtttaggaggctcaatcctccatcattcagtgggtttgagttagaggatgttcagaacttcttggataggtgccagcagattcttcgcacggcgggtattctggagactagtggatgggaggcctatgagttgagtagtccagtcggcgctgcaccacttacatggcacgacttctccaatctcttcttggagaagtttgcaccatcaacacgcaagaaggagttgtgtaggcagtttgagcagctatgccaggagggtgtgtccatgactcagtacgagatgagattttcaaaattggcttatcacacaatctcgttggttcccacagagagggatagtattaggaggttcattgatgtccataattatggactgcgatttgtcatgactcgggagattgcatcaggtgctaggttcgatgaggtggttgacattgctaagcgactagagcaggtccgtagtcaggagtgtgaggagaggaaggaaaagaggcctcctggtttgggtagtttcagcggtgtttcttttggagggtag
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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