LOCUS       XM_067612375            9019 bp    mRNA    linear   VRT 22-AUG-2024
DEFINITION  PREDICTED: Thunnus thynnus argonaute RISC catalytic component 3b
            (ago3b), transcript variant X1, mRNA.
ACCESSION   XM_067612375
VERSION     XM_067612375.1
DBLINK      BioProject: PRJNA1130912
KEYWORDS    RefSeq.
SOURCE      Thunnus thynnus (Atlantic bluefin tuna)
  ORGANISM  Thunnus thynnus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Thunnus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089531) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_963924715.1-RS_2024_07
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 07/03/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9019
                     /organism="Thunnus thynnus"
                     /mol_type="mRNA"
                     /db_xref="taxon:8237"
                     /chromosome="15"
     gene            1..9019
                     /gene="ago3b"
                     /note="argonaute RISC catalytic component 3b; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 17 Proteins"
                     /db_xref="GeneID:137198498"
     CDS             1201..3804
                     /gene="ago3b"
                     /codon_start=1
                     /product="protein argonaute-3 isoform X1"
                     /protein_id="XP_067468476.1"
                     /db_xref="GeneID:137198498"
                     /translation="

MEIGTTGAAEARALFSLPRRPGYGTIGKAIKLLANCFQVEIPKIDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDHLPVYDGKKSLYTASPLPVATSGVDLDVTLPGEGGKDRPFKVSMRFVSLVSWHMLHEVLTGRTMPEPLDLEKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSSPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPATLQTFPLQLENGQTVERTVAQYFREKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYEADPFVQEFQFRVRDEMAQVMGRVLPAPMLQYGGRVSSEPFMNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPIIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEVIQDLASMVRELLIQFYKSTRYKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRNERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADEFQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPTALAKAVQIHHDTLRTMYFA"

     misc_feature    1423..1701
                     /gene="ago3b"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:465134"
     misc_feature    1729..1881
                     /gene="ago3b"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:462567"
     misc_feature    1882..2244
                     /gene="ago3b"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(2038..2040,2083..2085,2125..2127,2137..2139,
                     2191..2193,2212..2214,2218..2220)
                     /gene="ago3b"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    2377..3675
                     /gene="ago3b"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2809..2811,2821..2823,2857..2868,2875..2877,
                     2899..2901,2908..2910,2920..2922,2932..2934)
                     /gene="ago3b"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(3013..3015,3019..3021,3229..3231,3643..3645)
                     /gene="ago3b"
                     /note="active site"
                     /db_xref="CDD:240015"
     polyA_site      9019
                     /gene="ago3b"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

tcattacttgacctatataacatatacatatatatctatagctaccagaaccactgcttctgcacatatttggcacaacttttctatttttacaacccacaagttagaaaatgtaacctaagtaatgtaatgtgtataatgtttataacgtatataaactgaattctttattactcctagttcttatctgttaccttgtttcctgcactgctgctgtaacgtgaatttccccctctagggatcaattatcactggtgtgtgacagcgagaggggaagaaactgttcccgtgtcggtggttttggtgcacaacttattaattttacagccacacttccaatcctctcatcaaactgaacagatgctgtattccaaatgttagactcatcttcaaagtctcatgccaatcaaaaatgtgtttatgcccactgttacttcacttggatgcttaagcttcaccgtgcagaatgatacaatatttacatatttattgattatggatttttaatgagagagaagggagattttaacatagtatctatacttctttgtgaaaaaacaaaagcaatcatatcagacacacatcatggttccaagcagagtattttatatgtcttgacacctgtctgcaacaaaacagacatctcctgcgcaacacctgttgccattaatcctactttattttgaaagagcgttgcggaagtagaaacatgctaatgctactagcttgccgttactaagagagagggcggcgtaacagcagatttcagaccggtttctcaccgataccgaggaggacgccggcgtagtgaaccccacatctcagtttgataaagaagaacaccgaattgtcacgttaaccaaccgggaaaacgaatccagtcactgaacggccacaacacaaacaactttggaagtacttaagcggggacgttttgtacaactttgagctgccaagttgccggtgaggcaggtcggggagagaggctccaggcaggtggaaaaccacaagcggcccggttcaacatcagcgaccgaagccggggagcagagagccggggagccgtaagggggagcggggtgcccggggggaagcggggagccagcggggagcggcgtgtcggccagcaaagctttaacctgcgctgggagaatcgatcactgggtgccggccgggttcatccggactgagacctcatgaatggaaatcggaacaacaggagccgctgaagcccgagcccttttttcgttgccacggcgacctggctatggcaccattgggaaggccatcaagcttctggcgaactgcttccaggtggaaatccccaagatcgacgtctacttgtatgaagtggacatcaagcctgataaatgtcctcgccgggtcaacagggaggtggtggactccatggttcagcatttcaaggtgaccatctttggtgaccatctgccagtttacgatgggaagaaaagcctctacactgcgagcccacttcctgtcgccactagcggggttgatctggatgtcacattgccaggtgaaggtgggaaggaccgcccgtttaaagtcagcatgaggttcgtgtcgttggtcagctggcacatgctgcacgaagtcttgacgggacgcaccatgcctgaaccgctggacctggagaaacccatcagcactaaccccgttcacgccgtggacgtcgtccttcgacacctgccctccatgaagtacacccccgtcggacgatccttcttctcctccccagagggctacgaccacccgctaggtggaggaagagaggtttggtttggttttcatcagtcggtacggccggccatgtggaagatgatgctcaacatcgatgtgtcagccacggctttttataaagcccagccagtcatccagttcatgtgtgaggtcctggatattcacaacattgacgagcagccccgcccgctcacagactcccacagggttaagttcaccaaagagatcaaaggtcttaaagtggaagtgacacactgcggaaccatgcgtaggaagtacagagtctgcaatgtaacacgccgccccgccaccctccagacatttcctctgcagcttgagaatggtcagacagttgagcgcacagtggcgcagtacttccgagagaagtataatctgcagctgaagtatccccacctgccctgtctgcaggtgggccaggaacagaaacacacctacctgcccctggaggtatgcaacatcgttgccggacagcgctgcattaaaaaattaacagataaccagacgtcaaccatgataaaagcaacagcgcgttctgcccccgacagacaggaagagatcagcaggctggtgcggagcgcaaattacgaggccgacccgtttgtccaggagttccagttccgtgttcgtgacgagatggctcaggtgatgggccgcgtcctgccggcccccatgctgcaatatggcggcagggtgagctctgaaccctttatgaaccgcacggtggccacacccagccacggggtgtgggacatgagggggaagcagttccacaccggagtggagattaagatgtgggccatcgcctgctttgccacccagagacagtgccgtgaggagattctcaagagcttcactgaccagctgcggaaaatctcaaaggatgctgggatgccaatccaaggccagccatgtttctgtaaatacgcccagggagctgatagtgtggagcccatgttcagacacctgaagaacacctacgctgggctgcagctaatcatcgtcatcctgcctggcaaaacgcccgtctatgctgaggtgaagcgggtgggagacaccctcctgggcatggccacccagtgcgtgcaggtgaagaacgtagtgaagacgtccccacagaccctctccaacctctgcctcaagatcaacgtcaagctgggaggcatcaataacatcctggttccacaccaacggccctctgtgttccagcagccgatcatcttcctcggggctgatgtcactcatcctccagcaggagacgggaaaaaaccatctattgcagcggtggtgggcagcatggacgcccatcccagcaggtactgtgctacggtgcgggtccagaggcccagacaggaggtcatccaggacttggcctccatggtgcgagagctcttgatccagttctacaaatcgacccgctacaagccaaccaggatcattttctacagggacggagtgtctgagggccagttcagacaggtgctgtactatgagctgctggccatcagggaggcttgcatcagtctagagaaggattaccagccagggattacctacatcgtcgtacagaaacgccatcacacacgcctcttctgtgcagatcgcaacgaacgggttggaagaagtgggaacattcctgccggcaccacagtggacacggacattacccacccctacgagtttgacttttacctctgcagtcacgctggaatccagggtacgagccggccttcccactaccacgtactgtgggacgacaactgtttcaccgccgacgagttccagctcctcacctaccagctgtgccacacctacgtacgctgcacgcgttccgtctccatcccagcacccgcctactacgcccacctggtggccttccgcgcccgctaccacctggtcgacaaagagcacgacagcgctgaaggcagccacgtctcagggcagagtaacggcagggaccccacggcgctggccaaggccgttcagatccaccacgacacactgaggaccatgtacttcgcctgatcgcccaccccccccccacctccacttccctccaccttcaccagcccactcagccagtcttagtgttcgacttcggatcagccgcctcgtctcatcgcgcagagcgacgtcgtgccgtcgcagctttggtcaccggaaaacacgacgacggcagcaggctgcgtaaggatgtcataagccagagaggagtacagctgcattatgcaatttgaaaccagccaattgtttctgtgctcccacccatgcatctctctttttttctccccctcatctcctctgctgtattttaaatcatgatggattctgtctcctttttaaaaactcacatcctcgccttccacattttacagcagctcaaagttttgttttgttttgttttttttttaatttcaagtgtgtgcttctggatcataaaacagagcatggcgaggtagcagggaatacaaaaacagcagatttttttttgttttgttttttttttgttgttgcatgggtgggcacgaagcagcaccagtgaggacccgacttgagcctcacgttgagcctaatgtcgctggtttatattgtagacggttttacatgtttgtgtgttttcagcttgtctagatacaatactgtatttgtctgtcgagcaaatgtgtgattgccatggcaacgtgttagtcgagaacactcgtaaatagcaaagcttctcgccccccccccttttttttttttctttctctctctcaaaaacggcaggctgccttactccttactcttctgtctccctttaagccaatggatggttattcacagtcattcagccagacagtaagaagcgtatctctacactcttaccagcacagacactgaatgaaacctttttttttttttttaaacaaagccacgtacattgccattcttttgaggcattgtgtgtatcgcttgttgccttactgcgaggcgaggtgcataaaaaggactgttagaatacgacgccatggccacaaaatggacaattttaaaaactctcactttaatagctcagcttggtacagaataatataccaaacgtttctcatgtgttttattcgtcttgctatttatcagttttcgtctctttttaacttaaaataacatttattttcagcaatagagcagtttttatcttctgatgaccacaaaccttttttttttttttttttcccccacacttttaacaaaaaaactgaccaatttagtcgtcaacagctcgttctgtgcaataaggtgttaaagcagagagaacaggttcggtggtgattgttttcgatgagtatttgtgcgctaaaacggttctcgagcgagttttagcaagtgataatgaactcggagtaggattgacgccgcagatgtgacgcgtggatgagtcgtctgacggcgtttttgtgagattataacaaaagtgcctgatttggttagagtgtgaaatgttggcaggacggagggttttttaatcgtatgttggtttgggtgcctctgttaatgcatttagtttaacagtaactataaaaaaaacactgcactgcccgacatgaggggctggacagcacagtcacatcacaggccgggtttgtgtgattatttctaatgttttctcattataaggaagcagttatttcctgattcccacttttaacgcactttgtttcctcgtgaacacaaaatattttgttcttggaatgaaatggagatcggacggcggtttaatcattggccaaaacagtttcggtttcagataaaattaatgaagctaaacaaaaattgcaatttcggccaaaactttcttgtcatatgatttaaaaatctttaaaatgtcaaaatattctccaggtaacaatctcgttttcttgatcactaagtaattatcacaatgaaagtttatttaaaataatgtcggactttgttttttcatgataattagtaatcttgtcatgatctcaaaaaacaaagcgagattttaaagtcatttttgtgtttgcgagaaaactaaaacaacataaataatcacacacagttggcgtcttcggccttccgtacgatgctgtaataaatatctgaatatctgaactatataacatgcagctaagtgaaggcagagactgtgtacttggatgtgcgtcctcacatgatgcaccgtcaggactcgcagtttgcactcttcagtcgaagccttcgtattcagatttcagagtctctgtcgcgttagttttcagagtcggtatgagctgggtgtcactcgactggcagtattatagcaccaaaaccgctttcagtactcgaaactcaacacggttccaggatggtgctcgatttcataaaacctttctattttggatcaaataatgtatcattatgggtaacgcttcctaattttatactgatttcctggtcattttttgcaggtatttaacagttaatttttaggacgttttgttcaaattataagataaaaatgtaaaaaggtgttaagttggtaaataccggttcattataggctatttgtatacgtagatgttctttttcaaaatttcttaataaaatagacttttgacagtttttaactgacagaaaatacttggttgtcagtgtgtagttttatgtgctaaacccaacattaacatattaggtttttttcaataatttcctaaaagtagctgctgtgtaactaataataataataataataatcataattcttaggacatttctttgaaagggttatgagggttaatatgctaatatatagtttgacacaaaaaactacacactgaaaactaaatatcttctgtcagttaaagaaaaattaccaactaaaccaatttaaacaaagtttcctgtaatttttaccaaattgcacaacagtctctgtaaaatgtcctaaaaattaaccgttaaatacctcaaattactctaaaaatttccaaaaaaattggtttaaaattaaaggacctgtaaaataaagcgttaccgcattatgcaaataaagcagatttttctctgctacttttatacacacttctgatttaccaatatggagttaaatgcaaaaattaatcgatataatcaagtaaaaagaaatctgtttataagaatccaacattttgaagtttatctcgttgccttttaatctgtcatcagaacttgggtcacagtgctgccggtttctggacgcccagccctgcagagtttagtccgtcatggtctcgcagtgtcgtttaacacggacggtttcatcactttggaccaaaccaacgtgcctggttgagggtgagcctggagggttggatggtctctgtactgctaactgtgctcgccacacatcaccagaaccaaacttcagctgctataagaaaacatttatttaaatatttcatcagatacatatatataggctatatatattaatacagagagacttagaggttatggtattttactgcacttaaaaagaaaaatagaaaaaaaaagatgcatgtgtttgtggagtcgagatgctgagatgtgcgttggtttagactctttctttgcctgcagttaaaacatttttaacaataatccaagcgccctttttgtgtttgtcgtcacgttgaagctgtttttttttttttttttttaatgtcagacattaccagcatttgatttttacttgaaaaagagtcagttgtgggcatgtttaacattgttggcgagtgctctgcttgttttttttttttttttgttttattttgaaagtgtatattgagtcttttccactcacgacgccacgtacagtaaatcgacctgaagacgcctgtaggcagggcgcagggccagacatcagatgcctttttttttttttttttcttcttcatgtgatttgaagaaagagaagaaaaaaaaaaaagaagcatttttaagtctgaacgaagatatatttatatttaaagatattaatgtaatgcacacactacttattttttctaacagaatcctatttgatgcggaatcgtaacagctgtattgaaatatcgacgttttaataatgatcgtttttttccaaaaaaaatttgataatgcaatacttcacgtgaaaagcgaaaccgatgctgcattgacctgctttttgtggagacggtcggagggtttgttctgtcatgtagtgatgagatgaaccgtcaaccatcctctgcttcttcttcttcttcttcttcttcttttttttaaaattcaccaaactaaaggcgagctgtgaagacctccctctactctgaattttattttatcatctcaaaagctcatgaaggaagcagaagactctaatggggtttaacacatttcttaatatttttacagcactgcaaactgcatcattaaaggttttattttgggtctttttcttctttttttttttttttttttttttttttttttttttttgcatattcacaagaggagggttgaaagttcatcctcagacttttgtcgattttgtccgttacagactgtgcctttcctgatggtgctgaacagaaaacaaacaaacaaacaaacaaacaaaaaaaaaaactgagtaaaacaatgaaatcttaacgttcagaacgggcgccgagctccgagtctacatggataagtatatattgatacatgacaatactgtaagttgtgattgtgtgtgtatgtttggtttgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagcgcgcgcgtccaacatatgccaagaacagataatatgcagaactgatcagttttcggagctgacaggaccaaacggcctgtgggggatcggttttaagtggacgggcactctggagcacaacccgaaacatttcttcttcttcttcttcttctacttcaaaaaaaacaaacaaactcatgaaaacgaggatctaaacattatgtagcattatttatttgacttcatctctacgggggacacgacgcgtctctttactgcctgttaacaacattttttttttcattatttactgtcaatttcatgtgttcattcttaaatggacggcaataatgaagtgtttgtgcaatcggtttttcctttttaattgtagtttttcttcttttttttgtttctttttctttttttttcttctaatgtgaaattttgggatagtttggttgtgtcatcatgagtgcccgtttccccacaaacataaatctttacac

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