2025-02-01 17:41:52, GGRNA.v2 : RefSeq release 227 (Nov, 2024)
LOCUS XM_067447819 8913 bp mRNA linear VRT 19-AUG-2024 DEFINITION PREDICTED: Pseudorasbora parva argonaute RISC catalytic component 3a (ago3a), transcript variant X5, mRNA. ACCESSION XM_067447819 VERSION XM_067447819.1 DBLINK BioProject: PRJNA1148495 KEYWORDS RefSeq. SOURCE Pseudorasbora parva (stone moroko) ORGANISM Pseudorasbora parva Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Gobionidae; Sarcocheilichthyinae; Pseudorasbora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_090178) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_024679245.1-RS_2024_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/16/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8913 /organism="Pseudorasbora parva" /mol_type="mRNA" /isolate="DD20220531a" /db_xref="taxon:51549" /chromosome="7" /tissue_type="liver" gene 1..8913 /gene="ago3a" /note="argonaute RISC catalytic component 3a; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 53 Proteins" /db_xref="GeneID:137082562" CDS 828..3410 /gene="ago3a" /codon_start=1 /product="protein argonaute-3 isoform X5" /protein_id="XP_067303920.1" /db_xref="GeneID:137082562" /translation="
MEIGTTGAVGAQSLFSVPRRPGYGTMGKPIKLLANCFQVEIPKMDVYLYEVDIKPEKCPRRVNREVVDSMVQHFKVTIFGDRRPVYDGKKSLYTANPLPVAPAGVDLDVTLPGEGGKDRPFKVSIKFVSLVSWHLLHEVLTGRSMSEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYEADPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEVIQDLASMVRELLIQFYKSTRYKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKEYQPGITYIVVQKRHHTRLFCADRNERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADEFQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTLRTMYFA"
misc_feature 1044..1328 /gene="ago3a" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 1356..1508 /gene="ago3a" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1509..1871 /gene="ago3a" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1665..1667,1710..1712,1752..1754,1764..1766, 1818..1820,1839..1841,1845..1847) /gene="ago3a" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 2004..3281 /gene="ago3a" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2415..2417,2427..2429,2463..2474,2481..2483, 2505..2507,2514..2516,2526..2528,2538..2540) /gene="ago3a" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2619..2621,2625..2627,2835..2837,3249..3251) /gene="ago3a" /note="active site" /db_xref="CDD:240015" ORIGIN
acaagctaatgataatgatggttatgatgatgacggtcactcgtggactcgcgcttcccctcgcagccaatcagcgcgtggctctcgcgccaggtccgtgcgtcgcgctcgcggaggatcagacgctccatatttagctgtagcgagtctcgcagaggctccgactgtcagagaaaccctgagagagagttcaactctcaacttatttcctgtcgccactggcttaaaacgaagggactaagcgctattgaaaagccactggcttcgagtgtggaattcagtgatgatcggggactttaagtgcagagaagactgcgtttgacgggatttttgccccctctcagatgggaatgtagcttagctggttacgttagcccggccactagcagtagcaggctagcgctgtcgaagagaggaggcgacataagtggactttcactcgctataacgtcataacacctcaacaaaccgcctcactctttccaaagacgcgtttgtgaaggcgtcgccgtcacagaaacagcgtttcgggactgtattggggcaggctgaggggaacttttccgtttagctgtcttagctagctggccgtcacgtcaatctgtcagccgaacctgaaatcccgaccagatagttcgagccagataccggggcaccgagcctcccaccgttgatatacgagcttctgggacggtggattaggagcccgcaacacgggaggagacgcttgctttgggttaacgggttagcggccgtcgggatccgagttgagtttctgaagttcgtctactgcgagccggggacggaaccggacagagacctcatgaatggaaatcggaactacaggagccgttggggcccagtccctgttctccgtgccacggaggcccggctatggcaccatggggaaacccatcaagctgctggccaactgcttccaggtggagatccccaagatggatgtctacctgtatgaggtcgacatcaagcccgaaaagtgtccacgccgagtgaacagggaggttgtggactcaatggtgcagcactttaaagtcaccatctttggggatcgaaggccagtttatgatgggaagaaaagtctctacaccgccaacccactgcctgtggcgcccgctggggtggatctggatgtcacgctgccaggggaagggggcaaagaccgaccctttaaagtcagtattaagtttgtgtccctggtgagctggcacctgttgcacgaggtactaactggtcgcagtatgtcagagcccttggagctggacaagccaatcagcaccaacccagttcacgctgtggatgtggttctacgccatctaccctccatgaagtacacaccagtgggccgctcattcttttctgctccggagggctacgaccatcctctgggtggaggcagggaagtgtggttcggcttccaccagtctgtccggccagccatgtggaagatgatgctcaacattgacgtgtcagccacggctttctacaaagcacagccagttattcagttcatgtgtgaggtactggacatccacaacatcgatgagcagcctcgccccctcacagactcccacagagtcaaattcaccaaagaaatcaaaggtctgaaggtggaggtgacacactgcggaaccatgcggaggaagtaccgggtctgcaatgtgacccgccgccctgccagccatcaaacgttccctttgcagttggagaatggccaaactgtagaacgaacagtagctcagtatttcagagaaaagtacaacctgcagctgaaatacccccacctgccctgtctacaggtggggcaggagcagaagcacacctaccttcccctggaggtgtgcaacattgtagcagggcagcggtgcatcaagaaactgacagataatcaaacatccaccatgatcaaagccacagcacgatcagcaccagacagacaggaggagatcagcagactggtgcgcagtgctaactatgaagcagaccctttcgtacaggagtttcagtttaaggtgcgagacgagatggcccacgtgacggggcgcgtgttgcctgcgcccatgctgcagtacgggggcaggaatcgcactgtggccacacccagtcatggagtttgggacatgagaggaaaacagttccacaccggggtggagatcaagatgtgggccatcgcctgcttcgccacacagagacagtgcagagaagagattcttaagggtttcacagaccagctgcgtaagatctcaaaggatgctgggatgcccatccagggtcagccgtgtttctgtaagtacgctcagggagccgacagcgtggagcccatgttcagacacctgaagaacacctactctggactgcagctcatcatcgtcatcctgccgggaaaaacacccgtctacgcggaagtgaagcgtgttggagacactcttctaggaatggccactcagtgtgtgcaggtgaagaacgtggtgaaaacctcgcctcagacgctctccaacctctgcctcaaaatcaacgtcaaactcggcggcatcaacaacatcctggtcccgcatcaacggccttcagtgttccagcagccagtcatctttctgggggcggacgtcacacatccacctgctggagatgggaagaaaccatccattgcagcagttgtgggcagtatggacgctcatcccagcaggtattgtgccacagtgcgggtccagaggcccagacaggaagtgattcaggacttggcctctatggtgcgagagctgctcattcagttctacaagtccactcgctacaaacccaccagaatcatcttctacagggacggtgtatctgagggacagtttagacaggtgttgtactacgagctgctggccattcgagaggcctgtatcagtctggagaaggagtaccagcccggcatcacatacatagtggtgcagaaacggcaccacacgcgcctcttctgtgccgatcgcaatgagagggtgggtcgcagcggaaacattcctgctggtacgacagtagacacagatatcacgcacccctacgagtttgacttttacctctgcagtcatgctggaatacagggcactagccggccctcccactaccatgtcctgtgggacgacaactgcttcactgctgacgagttccagctgctcacctaccagttgtgccacacatacgtgcgctgtacccgctccgtctccatccctgcgccagcctactacgcccacctggtggccttccgtgcccgctaccacttggtggacaaagaacacgacagtgccgagggcagccacgtctctgggcagagcaacggccgggatccccaagcgctggctaaagctgtgcagattcaccacgacaccctgaggaccatgtactttgcctaagccagctcacatcaagcccacgttcgactagtcatgcacacgaaaccaacaaccacatacacatgcagtcacacctcccaaaagcctgtgcgtcccgaagggtcgatctctgtggcgatggaagcacggctcagcccgacactgtgcagcaggatgaggaaggcctgctttaattccacacgtggacctcggcgctattatgcaatattaaaccagccaactgaggccgttctgtcatatcccctccaaacctttgacaacaaccaaaagggaagcccgtctatatccctgctcctcttcctgtctgtagacgtaatgtttaattacttcccctgcccgtcacgccttgtacctcaacgttttctaacagcacttttcccccctattatcctcccccttcccccaaaatgagattcgaaaggaagcagatggaaagactgagttgggaagaaaggaagtttcggggatagaggcatcacacgctcttactagcaattttctcaatgtacttttctcccgttctcaattatttttgtagccaatggtgacttaactacgtgttaaagtgtcagtcgtgaagaaccaattgtgcgttagagttttaaaacagaaaaacaagcttttattgttagaaaagtgccattgccgagcgtaaagtcctttatgacgttccccgccagcggggcagaaagctgaccgttgatttttaaagctaatgttcccattttacgctcagtaaaatctacctggcctgtgagctttcatgtactacaatgcaaagtgatcatgttttgatatgctttttcttttttctttttttaacacccaaattccctccaatatttatgtcttgatcaacgcagctcctagcagatttgtcttgttcacttcccttctgcactttgtctcaatttaaaatgcatagtccgtgttgtgacagatcatagtttagtgcaataatccattcgcgggatgagtacctcctgtgcaaagactcacagttcgctggaagtccgtagtggtgaaaaaggcactcttgctgttggtttttaaggtggaggtgtggcacttttatagttttctgaaagtagaggtgatgattgaccatagtgtgttaacaagtgcctgcttgatgttggggaggtcgaacagaattggatagatgctgtgggaaataacgaacgcaactcatctagtccaaacaagggcacagttgcgaacacattcgactgtacggccttaacaaaatctcttaacgttaacgtcttggttttcactgccctgcctgttcaaaggacttcgctgctattgtacttgttaaagtcagactggcgggttcatgcttcggtttcgcccaagcacgagggaccgattggcagctctgggccgtgtgtttaaggagaagctctcacagcacctgatgtgtgctctttcactggagggccactaggggtcagtatagtattttacttgaagagtgcatctcggtgcagtgagcgttgggtgccttactgtctctgtgcgccatctgaagcatgtccagctgtttaaaggtgataatctgcactaaacaatgcgtaatgcatggtgctattaggtgcggcccatggcggcatcagcgatttggcggagacttaatgtgtaacgatgggaacatggtatgcataaatggtgctggttgcatatatttctctcactccgagggggagattctcatcaggacagacatttggtcgttttgtgtgtttgttgtttgttttgttgatttgcatttgcatttgattttattgcgtagaaaggtacagtactgtggccagtcagaatacgattacggtcaattgcacaaagaaagtggaagattttaatgcatagcctaattatgacttttcaatttcagcccttttcaaaatccagatctctttatgcaatcagatgtttgctttttaaattctaaagtatgaataatcgcctgttaagaatgaaactaacgcagtgggatgttatatagagggttttctgcagggtttttaaaaaaagtgtgcattagaggtcggacctgtagaggaaggtacatgttttctgcccatcaggcctatcaaaagtggtttaagtgaggctgtaagcatcaaaacagcagctactgaaattgagcccttttttatttcaccttccctaataaaaccactattggtgcttcagagccttgaaagtaaaaccgcctgtgtgcggatgccaaacagctatcagtttaagaagcaatcttgatgaggtgtcatgctattttatttttgtgtagttttaacttcatatatatatatattactaacccttgcctcttgtttaggcaagaaatggatagttcggttataagtgattgtcattatttactcgcccacatgacttttctatcgctgaacgtggtgtacgtggtgttttaaagagcgtttgagttgctgtccatgcaacaaaaggcaaggatatcagtaaatgattgtcattttggagcttgctacactgtaaaaaaaaagtgtgctgccttaaattttaaagttgagtcaacttaaaaagtgaagttgcactaagtgacaacttggatatttgagttgacaacttaatattttaagtaagcacaaacttttcagtctatttttgttcagtccaagtcaacagctttagacaacgttctgtgaaattgcttcttatgaaagaagtgaatgtttgaatgacatgagggtgagaaaatgcttatgtgattgtctaatttttatctgaacgattcttcaaagcgacgaacggttttacccgaagatcgtacagagtgttagtgatgtatcggctgtggtagcagatgttgttgcaggggactcggttggttcgtagcagagtttcagtgcttgagtttgttgcctgacgtggcttccgttatccgtaaacctagaagtcaaacagccacatcccagtcagacaacgtattttctcctctcctctctcgtcttttaatttccagctttttgggagggtcttcttttagggtctaaaacgttacacgagttcagagttcatagaaagtgcctttcctcatgatggtgctgaataatctgagactaaagtgagaaatcaaagagcatattagtcttattcttaccttgaagaaggtgttgcacacatgcaaacacgcacgaacacattttatctcgatcgggaggctcggtgcctctttgtatattcagatatattatagtgacgatgatatatgccaagtatacgagcgaacggttctgtatcatactgtattaggagtccggaccaatgcaatggaagcgttcttataggtgaatgtgctatctttagatgggggcagagcggacactcatatgacacggcctgaccctggacaggaaagcctagcacagcactttaaagactgccacctaaacaaggaaacaaagtcacagtgctttgctctccttttccttttccccccataaacccttttttcatgtactccagcaaaagtctctagctcttgaagtctttgctgagggaaacttgagcgagattaattgaggtttacacaaggctccggtgacgtctttttggacttttttttattgccgtgactgatcgatccctctcaatgtgcaatggcccgtatagatctacatacagtatatgttttaaacatgagattgacccccatggcctgtgttttgtcacatgggtgcccgttggtccaggaggatatacctcgatgtagatctcaaaacactgcacctcacttaccttggtatgctgcaaatgttatatagaatgggtggatctcacgaaaatacacatcctgctcacgtttcaaattatgttttgcatgacaaaaaggaaggctattttcgtgcattgcggcaattaaacaaatctccccctccccaaattctgatgcatttgtacaccaccgtaatattgcttttcatttacgcagatttaaatgtaataatgcacatcgttctgttactattgaggtcgatgggaattacaaaactactcaactgggagaaattatgaaaataatgcaacaattgtatttgttgctataatatgcttaatttttgtccgttatgcttaattatattttccattaggaaaattaagccttttttggcattgtgaatatttttgagactattaaatgcatctccaaattctcattatgcaaacaaaaatattaaactgtattcatacatcatggtagtatttgtgcattgccttccatttatgctgatttaatgtaatacagcaaatatcattttatcaccattgatgggaactacaaaaccgctcaaaacgttgagagaaaagtgcttaattctcgtgaaaataatacaacagatgtattcgttgttataatattgccttattttcatgcaaaatgtcatttctagtgcacgacacacaaataagcaattgtattttgcataaagaaaatgaaattactatttctatgatgattgaatgcattcccccctctgcaaattctcatttatgcaaaccaaaatatatatatataatattaaaatgtattcatatatcatgtagtatttgtcgcattggctttcatgtatgctgatttaatgtaaggcagcaaaaatgaattacaaaacgccgtttgggagaaattcgcttaatcgttgtggaaataatgcaagaaatatcggcatcgttttccctgtgcaaaatatacttttcctttgattttggggtggatatgttttcttgagattcatccagaaattacgttgattacagtatattgcttgactaatgcctgacaacaatatccttaacgattttagagcaagaagtctaattgttagaaaacaagttgtttttaaatcataacacgtatctttttcttcttttattgagccaacttttttttattttgttgtcctatttaaatgtgttttgtttttttcttttaatatattggaaatatatatgggaaatatttaacggtgtatttattgagggagtgctttcgcggctggagtctccgcatcgttggccagagtcacgggggggcgagttgggggtcggggggtcagacgccctcgacgtcatcctctcacaagcacaaccacagagtgggcggggccggcacaagcctgaagtgttggatgacatcacttcctccttgcccttttgactagatcgtccacctcattcttcagctctccagcgaagaggctcgtcgcatctcatctctttacgggacggagaaccacactgactttattccaaaaagataaaaagctgattgttttcatccagagctgctaaactcttagccatacacgtttccctggaaggatgtttgatgcgtccggtgctttaagtggagtcgagaagcagatactgctatttgtccttcatcatttgcttgagttcaattgtcttcgtgccagagagggggtcccattccactcagaaatatataaatacattttta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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