2025-03-10 04:59:33, GGRNA.v2 : RefSeq release 228 (Jan, 2025)
LOCUS XM_067191194 2966 bp mRNA linear INV 09-AUG-2024 DEFINITION PREDICTED: Acropora muricata protein argonaute-2-like (LOC136922849), mRNA. ACCESSION XM_067191194 VERSION XM_067191194.1 DBLINK BioProject: PRJNA1140574 KEYWORDS RefSeq. SOURCE Acropora muricata ORGANISM Acropora muricata Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Acroporidae; Acropora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_090042) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036669905.1-RS_2024_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2966 /organism="Acropora muricata" /mol_type="mRNA" /isolate="sample 2" /isolation_source="Coral reefs" /db_xref="taxon:159855" /chromosome="7" /tissue_type="Polyps" /geo_loc_name="China: Spratly Islands" /collection_date="2017-10-20" gene 1..2966 /gene="LOC136922849" /note="protein argonaute-2-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 50 Proteins" /db_xref="GeneID:136922849" CDS 166..2454 /gene="LOC136922849" /codon_start=1 /product="protein argonaute-2-like" /protein_id="XP_067047295.1" /db_xref="GeneID:136922849" /translation="
MARKSKGRSNRGREKENNEQDRQQSLKGRSENGAAAVVSDLEEKRKLDEEKGEETLWETAGPSERTNISRSQQSAYTALSTEVKSEEVNAIPSARSQDERSGLSELSLRSSTDPFVKPAGNTEEYIGEGCEVKFGFYQSVRPSQWKVMLVNIDVSAKGFNKSQPVTEFVCETLGLRDLEDRRIKIDREKLKKAISGFRIETTHMAKMRRKYTVWGMSNQSAEKLQFEIIDEASKRTTKTTVAGYFLDTYGIELRYPHLPCLQVGRKRDCYLPMEVCTTIPCQKRHLSEQQTSNMIRSTAHPEPERQKDIQLWAQKMITGSEGYLKDQFQTSIDPPPPLKLGPQDKALTPRDGSWDMSNQALLKSAIVDMWALVCLAPCNEDPLRNFCHQMSSVSNREGMKMTSKPACIKYGERHEEVERLFFDCLEQFQALQLIMVVLPGNDKKLYSEVKRVGDSVIGIPTQCVQVKFVQQVKPQVCANILLKINAKLGGTNHVIDDSFKPAISKDTIVFGADVTHPSPTENGIPSIAAVVASMDYHASKYHARSRVQRYRNGGGAQEIIMDLAEIVKELLIEFIKTNEFRKPSKILFYRDGVSEGQFDQVLVHEVRAVQEACMKLEKDYRPSITFVVLQKRHHTRLFSGKASNVPSGTTVDSGIRHPYEFDFYLCSHHGIQGTSRPTHYNVLYDDNNFTADSLKQLTYQLCHVSARCTRSVSMPAPAYYAHLAASRARVHVTNGNSEFVDLEKCARAIQVNDKMKSEMYFT"
misc_feature 508..642 /gene="LOC136922849" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 649..996 /gene="LOC136922849" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(796..798,841..843,886..888,898..900,952..954, 970..972,976..978) /gene="LOC136922849" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1165..2358 /gene="LOC136922849" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1501..1503,1513..1515,1549..1560,1591..1593, 1600..1602,1612..1614,1624..1626) /gene="LOC136922849" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1702..1704,1708..1710,1936..1938,2329..2331) /gene="LOC136922849" /note="active site" /db_xref="CDD:240015" ORIGIN
tatgttgacaaaatgctgattatctaagctattaaatatgttgacaaagctcaacaagagtggaagtgtttgcgtgcaattgataagagtttacacagaattgataagtatttacctaggttttcaagctatccttcgtaaagtacatactccattgcaataaaaatggcaaggaaatcgaagggaagaagtaatcgaggcagagagaaagaaaacaacgagcaagatcgtcagcaatcgctgaagggaagaagcgagaacggcgcagctgccgtagtttcggatcttgaggaaaaacgaaaattagacgaagagaaaggcgaagaaacactctgggaaacagctggtccaagcgaacgaacaaatatcagtcgaagccagcaatctgcttacactgcactttctacagaagttaagtctgaagaagtgaatgcaatcccttcagcacgatcgcaagatgagaggtcaggcctgagtgaactgtctctcagatcaagtacagatccttttgtaaaaccagctgggaatacagaggaatatataggggaaggctgtgaggtgaagtttggtttctaccagagtgttcgcccctcacaatggaaagtcatgctggtgaacattgatgtgtctgcaaagggattcaataaaagtcaacctgtaacagagtttgtgtgtgaaacactgggtctgcgggatcttgaagacagaagaattaaaattgacagagagaaactcaagaaagctataagcggttttcgtatagaaacaacacatatggcaaaaatgaggaggaagtacacagtttggggaatgtccaaccaatctgctgaaaaattacaatttgaaattatagacgaggcctcaaagcgtactaccaaaacaactgtagccgggtactttcttgacacatatggaatagaattaagatatcctcatctaccctgtctccaagttggccggaaaagagactgttaccttcctatggaggtctgtactaccattccttgtcaaaagaggcacttgtctgaacaacaaacctcaaatatgatcaggagtaccgcacaccctgagccagagcgacagaaggacattcaactttgggctcaaaaaatgataacaggaagtgaagggtacttgaaagatcagtttcagacaagcatagacccacctcccccactgaagcttggtcctcaagataaagcactgaccccgcgtgatggctcttgggacatgagcaatcaagccctcttaaaaagcgcaatagtcgatatgtgggcgttggtctgtttggctccttgcaatgaggatccactaagaaacttttgtcatcaaatgtccagtgtgtcaaatcgagaaggaatgaaaatgacttcaaagccagcctgtattaaatatggagaaagacatgaagaagttgagcgattgttctttgactgtttggagcaatttcaagcgcttcaactcatcatggttgtcctcccaggaaacgataaaaaactctactcagaagtgaaacgcgttggcgatagcgtaatcggcattccaacacagtgcgtacaggtgaaatttgtgcagcaggtgaaacctcaagtgtgtgctaacatcttgcttaagatcaatgccaagctcggaggaaccaatcacgtcattgatgattcgtttaaaccagcgatcagcaaagatactatcgtgtttggcgccgatgtgacccacccctcccctacagaaaatgggatcccttccattgctgctgtagtggcaagcatggattatcatgcctcgaaatatcacgcccgctcccgcgtgcagaggtacaggaatggcggaggtgcacaagagatcatcatggacctggcagagattgtaaaagagctcctaatcgaatttatcaaaactaatgagttccgtaagccgtctaagatcttgttttaccgtgatggtgtcagcgaggggcagtttgatcaagttcttgttcacgaagtgcgcgccgtgcaagaagcttgtatgaagcttgagaaagactatcgaccgagcatcacgtttgtcgttctacagaaacgacatcacactagattgttttctggtaaagcaagtaatgtaccatcaggaacaaccgtggacagtggaattaggcatccgtatgaattcgatttctatttgtgtagccaccacggaattcagggaacaagtcgaccaactcattataatgtcttatatgacgacaataacttcactgctgacagcttgaagcagctcacttaccagctgtgtcacgtgtctgccaggtgcacgcggagtgtttctatgccagcccctgcgtattacgctcatttggcagcttcccgggcacgcgtccacgtgaccaatggaaactcagaatttgttgatttggaaaagtgtgcaagggccattcaagtcaatgacaaaatgaaaagtgaaatgtacttcacctgaattgaaagttaacgattccttggatgggctggaaacaagttaattcacatcttcaacaaattgaagtcaatttttttatatatctgtccttatattaagcattgagcgataaaaaaaaaaaagaaaaacactaaaatctgcgaaaagctccaaattctatcaattgtcttcaaacttgcgcaataagaattgtcgcacgctcattggttactggtgacagatgtcgaaattccataaagttacgccactatattgtgtaaattaaatttttgtgtctgtcctcttgttgatgataaaaagaagtcaatcaacgctagagaatcttttgttcttctaattttcactgttaaaattagtcaggaaaatcatttttaatttaagaacacttgccctccaataatgtgacctgggttcgattcaggacccaacgtcatatttgagtcaagattttgagtcctgttcgctacttatttaattgttaatattaatattattaagaggggggaaattgc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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