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2025-03-10 04:59:33, GGRNA.v2 : RefSeq release 228 (Jan, 2025)

LOCUS       XM_067191194            2966 bp    mRNA    linear   INV 09-AUG-2024
DEFINITION  PREDICTED: Acropora muricata protein argonaute-2-like
            (LOC136922849), mRNA.
ACCESSION   XM_067191194
VERSION     XM_067191194.1
DBLINK      BioProject: PRJNA1140574
KEYWORDS    RefSeq.
SOURCE      Acropora muricata
  ORGANISM  Acropora muricata
            Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia;
            Astrocoeniina; Acroporidae; Acropora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_090042) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036669905.1-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2966
                     /organism="Acropora muricata"
                     /mol_type="mRNA"
                     /isolate="sample 2"
                     /isolation_source="Coral reefs"
                     /db_xref="taxon:159855"
                     /chromosome="7"
                     /tissue_type="Polyps"
                     /geo_loc_name="China: Spratly Islands"
                     /collection_date="2017-10-20"
     gene            1..2966
                     /gene="LOC136922849"
                     /note="protein argonaute-2-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 50
                     Proteins"
                     /db_xref="GeneID:136922849"
     CDS             166..2454
                     /gene="LOC136922849"
                     /codon_start=1
                     /product="protein argonaute-2-like"
                     /protein_id="XP_067047295.1"
                     /db_xref="GeneID:136922849"
                     /translation="
MARKSKGRSNRGREKENNEQDRQQSLKGRSENGAAAVVSDLEEKRKLDEEKGEETLWETAGPSERTNISRSQQSAYTALSTEVKSEEVNAIPSARSQDERSGLSELSLRSSTDPFVKPAGNTEEYIGEGCEVKFGFYQSVRPSQWKVMLVNIDVSAKGFNKSQPVTEFVCETLGLRDLEDRRIKIDREKLKKAISGFRIETTHMAKMRRKYTVWGMSNQSAEKLQFEIIDEASKRTTKTTVAGYFLDTYGIELRYPHLPCLQVGRKRDCYLPMEVCTTIPCQKRHLSEQQTSNMIRSTAHPEPERQKDIQLWAQKMITGSEGYLKDQFQTSIDPPPPLKLGPQDKALTPRDGSWDMSNQALLKSAIVDMWALVCLAPCNEDPLRNFCHQMSSVSNREGMKMTSKPACIKYGERHEEVERLFFDCLEQFQALQLIMVVLPGNDKKLYSEVKRVGDSVIGIPTQCVQVKFVQQVKPQVCANILLKINAKLGGTNHVIDDSFKPAISKDTIVFGADVTHPSPTENGIPSIAAVVASMDYHASKYHARSRVQRYRNGGGAQEIIMDLAEIVKELLIEFIKTNEFRKPSKILFYRDGVSEGQFDQVLVHEVRAVQEACMKLEKDYRPSITFVVLQKRHHTRLFSGKASNVPSGTTVDSGIRHPYEFDFYLCSHHGIQGTSRPTHYNVLYDDNNFTADSLKQLTYQLCHVSARCTRSVSMPAPAYYAHLAASRARVHVTNGNSEFVDLEKCARAIQVNDKMKSEMYFT"
     misc_feature    508..642
                     /gene="LOC136922849"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:462567"
     misc_feature    649..996
                     /gene="LOC136922849"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(796..798,841..843,886..888,898..900,952..954,
                     970..972,976..978)
                     /gene="LOC136922849"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1165..2358
                     /gene="LOC136922849"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1501..1503,1513..1515,1549..1560,1591..1593,
                     1600..1602,1612..1614,1624..1626)
                     /gene="LOC136922849"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1702..1704,1708..1710,1936..1938,2329..2331)
                     /gene="LOC136922849"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
tatgttgacaaaatgctgattatctaagctattaaatatgttgacaaagctcaacaagagtggaagtgtttgcgtgcaattgataagagtttacacagaattgataagtatttacctaggttttcaagctatccttcgtaaagtacatactccattgcaataaaaatggcaaggaaatcgaagggaagaagtaatcgaggcagagagaaagaaaacaacgagcaagatcgtcagcaatcgctgaagggaagaagcgagaacggcgcagctgccgtagtttcggatcttgaggaaaaacgaaaattagacgaagagaaaggcgaagaaacactctgggaaacagctggtccaagcgaacgaacaaatatcagtcgaagccagcaatctgcttacactgcactttctacagaagttaagtctgaagaagtgaatgcaatcccttcagcacgatcgcaagatgagaggtcaggcctgagtgaactgtctctcagatcaagtacagatccttttgtaaaaccagctgggaatacagaggaatatataggggaaggctgtgaggtgaagtttggtttctaccagagtgttcgcccctcacaatggaaagtcatgctggtgaacattgatgtgtctgcaaagggattcaataaaagtcaacctgtaacagagtttgtgtgtgaaacactgggtctgcgggatcttgaagacagaagaattaaaattgacagagagaaactcaagaaagctataagcggttttcgtatagaaacaacacatatggcaaaaatgaggaggaagtacacagtttggggaatgtccaaccaatctgctgaaaaattacaatttgaaattatagacgaggcctcaaagcgtactaccaaaacaactgtagccgggtactttcttgacacatatggaatagaattaagatatcctcatctaccctgtctccaagttggccggaaaagagactgttaccttcctatggaggtctgtactaccattccttgtcaaaagaggcacttgtctgaacaacaaacctcaaatatgatcaggagtaccgcacaccctgagccagagcgacagaaggacattcaactttgggctcaaaaaatgataacaggaagtgaagggtacttgaaagatcagtttcagacaagcatagacccacctcccccactgaagcttggtcctcaagataaagcactgaccccgcgtgatggctcttgggacatgagcaatcaagccctcttaaaaagcgcaatagtcgatatgtgggcgttggtctgtttggctccttgcaatgaggatccactaagaaacttttgtcatcaaatgtccagtgtgtcaaatcgagaaggaatgaaaatgacttcaaagccagcctgtattaaatatggagaaagacatgaagaagttgagcgattgttctttgactgtttggagcaatttcaagcgcttcaactcatcatggttgtcctcccaggaaacgataaaaaactctactcagaagtgaaacgcgttggcgatagcgtaatcggcattccaacacagtgcgtacaggtgaaatttgtgcagcaggtgaaacctcaagtgtgtgctaacatcttgcttaagatcaatgccaagctcggaggaaccaatcacgtcattgatgattcgtttaaaccagcgatcagcaaagatactatcgtgtttggcgccgatgtgacccacccctcccctacagaaaatgggatcccttccattgctgctgtagtggcaagcatggattatcatgcctcgaaatatcacgcccgctcccgcgtgcagaggtacaggaatggcggaggtgcacaagagatcatcatggacctggcagagattgtaaaagagctcctaatcgaatttatcaaaactaatgagttccgtaagccgtctaagatcttgttttaccgtgatggtgtcagcgaggggcagtttgatcaagttcttgttcacgaagtgcgcgccgtgcaagaagcttgtatgaagcttgagaaagactatcgaccgagcatcacgtttgtcgttctacagaaacgacatcacactagattgttttctggtaaagcaagtaatgtaccatcaggaacaaccgtggacagtggaattaggcatccgtatgaattcgatttctatttgtgtagccaccacggaattcagggaacaagtcgaccaactcattataatgtcttatatgacgacaataacttcactgctgacagcttgaagcagctcacttaccagctgtgtcacgtgtctgccaggtgcacgcggagtgtttctatgccagcccctgcgtattacgctcatttggcagcttcccgggcacgcgtccacgtgaccaatggaaactcagaatttgttgatttggaaaagtgtgcaagggccattcaagtcaatgacaaaatgaaaagtgaaatgtacttcacctgaattgaaagttaacgattccttggatgggctggaaacaagttaattcacatcttcaacaaattgaagtcaatttttttatatatctgtccttatattaagcattgagcgataaaaaaaaaaaagaaaaacactaaaatctgcgaaaagctccaaattctatcaattgtcttcaaacttgcgcaataagaattgtcgcacgctcattggttactggtgacagatgtcgaaattccataaagttacgccactatattgtgtaaattaaatttttgtgtctgtcctcttgttgatgataaaaagaagtcaatcaacgctagagaatcttttgttcttctaattttcactgttaaaattagtcaggaaaatcatttttaatttaagaacacttgccctccaataatgtgacctgggttcgattcaggacccaacgtcatatttgagtcaagattttgagtcctgttcgctacttatttaattgttaatattaatattattaagaggggggaaattgc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]