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2024-12-04 03:02:15, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XM_066851271            3396 bp    mRNA    linear   PLN 31-JUL-2024
DEFINITION  Apiospora aurea NRDE-2- necessary for RNA
            interference-domain-containing protein (PG986_015049), partial
            mRNA.
ACCESSION   XM_066851271
VERSION     XM_066851271.1
DBLINK      BioProject: PRJNA1140273
            BioSample: SAMN32709951
KEYWORDS    RefSeq.
SOURCE      Apiospora aurea
  ORGANISM  Apiospora aurea
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Sordariomycetes; Xylariomycetidae; Xylariales; Apiosporaceae;
            Apiospora.
REFERENCE   1  (bases 1 to 3396)
  AUTHORS   Sorensen,T.
  TITLE     Analysis of 21 Apiospora genomes using comparative genomics revels
            a genus with tremendous synthesis potential of carbohydrate active
            enzymes and secondary metabolites
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3396)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUL-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3396)
  AUTHORS   Sorensen,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2023) Department of Biosciences and Chemistry,
            Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland
            9220, Denmark
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_027117398).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..3396
                     /organism="Apiospora aurea"
                     /mol_type="mRNA"
                     /strain="CBS 24483"
                     /culture_collection="CBS:24483"
                     /db_xref="taxon:335848"
                     /chromosome="Unknown"
     gene            <1..>3396
                     /locus_tag="PG986_015049"
                     /db_xref="GeneID:92084333"
     CDS             1..3396
                     /locus_tag="PG986_015049"
                     /note="consensus disorder prediction; NRDE-2_ necessary
                     for RNA interference"
                     /codon_start=1
                     /product="NRDE-2- necessary for RNA
                     interference-domain-containing protein"
                     /protein_id="XP_066692360.1"
                     /db_xref="GeneID:92084333"
                     /translation="
MSSSKQGQKSSRVPTFSSFKPKTTEAAVVPANDQGRSERNTKEQDRKESHQPKEGRSRSHHHRSDRHSSPRQHDEHGGRSDGKRSRHHDDERSPPSRESLDLPRRSTAVASSEASSRDNFVVDKRGDPLIRRYGGNNRYDVPAYRRYGRGHILGADGLIRVEQLGSRDEFTIRGFYEGGGGGSALNSGRKHPLAGSRRAGAEVVRVRAEKAATYTGSEDFLPLGGAGSSKKRKRPESDASGASSDEEGPSYRSIHGKSKPHEFSDSDEEYGSDAAGESRARDLDDPIKARTVQLSQHTRQHPEDIDAWLALVDHQDTLLHIKDRDGRRPTPAEVRSFADIKLSMLEKALSHCTSPEQRETLLLRTMVEGAKIWDAKALARRWEDVVREHSSSFAIWKAYVDFRQTSLSGLRYEDMKLLYISKMQQIKAALHAQGSEPVDQDLYAQLVIVFTRLTRFVAESGYYELAAASWQAILELHFCRPTSMAEGDNTNNNTRTVPPSFQGFWESEVARIGEDSAKGWAAFDTNGGTEEPPEPIAFDNGTTLHTRDPYKAWAAAEQHRSSHARVPARTMDEGTEDDPYRVVMYTDIEDFLFYVPHSALQFAQEQLISAFLIFHQLPPAPGSGSLSDLLVRDGLLDTNGLIHSGGKKQDLSETPETEGAANKPLEFPQSHQRISPSTEVLFPPTAAWFNYLGSAVRALTNDGQLQLVSNTLKQLARSRGRSDLAAYHLAFDICSPKTDGKKAAKALLTKYPTNIDLYIGYANYEFRAGNHTVASNVITAALQLPSLSYEEKLQLSTAWTWMALEHGDLATSLSRLCLAGQETQSTVTEPTSPAWILKTRQTLTSNCEYSTSQGNATVASLYAKALVLLQYLTQQSGKEPRGEGQGDIETAMAVVAKCSDEFKARGLAADAGHERLLQFAAQLLYVHISHGPYRPAFLREQAAAFLGFFPDNTLFLTLFGWKETRLSIDDRVRSLLTDVVLTKPHDGASARVFAIRHEMRSGNAHSTRAAFEHALEDSPGSKHNVGLWVSYTRYCRETKELRPKAKEVFYRAIQRCPWSKEVFMEAFGTLVRDLDSAELRSVYSTLYEKGVRVHVEMDEFVGRWKEEARQRDQQRDQQSHSHRPTAGRSRR"
ORIGIN      
atgtcgtcgtccaagcaggggcagaagtcatcgcgtgttcccacgttctcgtcgttcaaaccaaagacgactgaggcggcagtggtgcccgccaacgaccaaggccgctcggagagaaacaccaaggaacaagataggaaagagagccaccaacccaaggaaggaaggtcgcggagtcatcatcaccgcagtgatcgacactcaagtcctaggcagcatgacgagcatggcggcagatccgatgggaagcgatcgcgccaccatgacgatgaacgatcaccgcccagcagggaaagcctggatctcccgcggaggtcaaccgccgtggcttcttctgaagcatcttccagggacaacttcgtggtcgataagcgcggggacccactgatcaggcgatacggtggcaacaatcgctacgacgtcccggcgtaccggcggtacgggcgcggtcacatcctgggcgccgacgggctcatccgcgtcgagcagctggggagtcgggacgagttcaccatccggggtttctacgaaggcggcggcggcgggtccgcactcaatagtgggcgcaagcatccgctggcaggttctcgtcgcgccggggcagaggtcgtcagggtacgagccgagaaggcggcgacgtacactggttccgaggatttccttccactgggcggcgccggctcttccaagaagaggaagagacccgagtcagatgctagtggcgcatcttccgacgaggaggggccgtcgtaccgatccatccatgggaaatccaaaccgcacgagttctccgacagcgacgaagagtacggcagcgacgctgctggagaatctcgggcgagggatctagacgaccccatcaaagcaaggaccgtgcagctgtcgcagcatacgagacaacacccagaagacatcgacgcctggctggcattggtagaccaccaggataccctgctgcacatcaaagaccgagacggccggagaccaacgccggccgaggtccggagctttgccgacatcaagctctccatgctggagaaggccctgtcgcactgcacatcgcccgaacagcgggagaccttgctcctgcgcaccatggtggaaggggccaagatatgggacgccaaggccctggcgaggcgctgggaggatgttgttcgcgagcacagctccagctttgccatctggaaagcctacgtggatttcaggcagacgagcctgtcgggtctgcggtatgaagacatgaaactgctgtacatcagcaagatgcagcagataaaagctgcgctgcacgcacaaggatcggagcctgtcgatcaagatctatatgcccagctcgtcattgtctttactaggttgacccgcttcgtcgccgagagcggctactacgagctcgcagccgcatcctggcaggcgattctcgagctacacttctgtcgcccaacaagcatggctgaaggtgacaacaccaacaataacacaaggacagtgcccccgagcttccaaggcttctgggagagtgaagtggcccggataggcgaggactccgccaaaggttgggcagctttcgatacgaacggtggtacggaagaacccccggagccaatcgcctttgacaacggcactactttgcatacccgggacccctacaaggcctgggcggcggcggaacagcaccggagctctcatgccagagtcccagcccggactatggatgaaggtaccgaggacgacccgtaccgagtggtcatgtacaccgatatagaggatttcctcttctacgtgccccacagcgcgttgcaattcgctcaagaacagctgatctctgccttcttgatattccaccaactcccgcctgcgccaggctccggcagtttaagcgatctactggtccgagatggactgctcgacacgaacggcctgattcactctggcggcaagaagcaagatttgagcgagacccccgagaccgaaggcgccgcaaacaaaccccttgaattcccccagagccaccaacggatcagcccgagtaccgaagtgctcttccctccaacggcggcgtggttcaactacctgggctcagccgtccgcgccctcaccaacgacggccagcttcagctggtttccaacaccttaaaacagctcgctcgctcccgtggccgtagtgacctggcggcgtatcatctggcctttgacatctgcagtcccaagaccgacgggaagaaggcggccaaggccttgctgacgaaatacccgaccaatatcgacttatacattgggtatgccaactatgagttccgtgcgggcaaccataccgttgcttccaacgtcattactgccgcgctccagctgccaagtctttcttacgaagagaagctccagctttctactgcctggacatggatggcactcgagcacggcgatctggctacgagtctgtccagactctgtctcgccggccaagagacccaatccactgtaacggagccgacttcgccagcatggattctcaaaacccgacagaccctgacctcgaactgcgaatactcaacttctcaagggaacgctaccgtcgcctcgctctacgccaaggcgctggttctgctgcaatacttgacccagcagagcggcaaagagccgcgtggagagggccagggcgatatcgaaacggccatggcggtcgtcgcgaagtgctcggacgagttcaaggcccgggggcttgcggccgatgctgggcacgagcggctgctgcagttcgcggcgcagctcttatatgtgcacatcagccatggaccataccgccccgccttcctccgcgaacaggccgcggccttcctgggcttcttcccggacaacaccctattcctcaccctcttcggctggaaggagacgcggctcagcatagacgaccgcgtccgctccctgctgaccgacgtcgtgctaacgaaaccgcacgacggcgcctcggcccgggtcttcgccatccggcacgagatgcggtccggcaacgcgcactcgacgcgggccgcgttcgagcacgccttggaagatagtcctgggtctaagcacaatgtagggctgtgggtctcgtacacacggtactgccgcgagaccaaggagctgcggcccaaagccaaggaggttttctaccgggccattcagcggtgcccgtggtccaaggaggtgtttatggaggcgtttgggacgttggtccgggatctggattcggcggagctgcggtcggtttatagcacgctgtacgagaagggggtgcgcgtgcacgttgagatggacgagtttgtggggaggtggaaggaggaggccaggcagcgggatcagcagcgggatcagcagtcacatagccacaggcctacggcgggtcgtagtcgtcggtag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]