2025-02-02 17:42:11, GGRNA.v2 : RefSeq release 227 (Nov, 2024)
LOCUS XM_066842616 2925 bp mRNA linear PLN 31-JUL-2024 DEFINITION Apiospora aurea piwi domain-containing protein (PG986_006394), partial mRNA. ACCESSION XM_066842616 VERSION XM_066842616.1 DBLINK BioProject: PRJNA1140273 BioSample: SAMN32709951 KEYWORDS RefSeq. SOURCE Apiospora aurea ORGANISM Apiospora aurea Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Xylariomycetidae; Xylariales; Apiosporaceae; Apiospora. REFERENCE 1 (bases 1 to 2925) AUTHORS Sorensen,T. TITLE Analysis of 21 Apiospora genomes using comparative genomics revels a genus with tremendous synthesis potential of carbohydrate active enzymes and secondary metabolites JOURNAL Unpublished REFERENCE 2 (bases 1 to 2925) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (26-JUL-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2925) AUTHORS Sorensen,T. TITLE Direct Submission JOURNAL Submitted (16-JAN-2023) Department of Biosciences and Chemistry, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_027117391). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2925 /organism="Apiospora aurea" /mol_type="mRNA" /strain="CBS 24483" /culture_collection="CBS:24483" /db_xref="taxon:335848" /chromosome="Unknown" gene <1..>2925 /locus_tag="PG986_006394" /db_xref="GeneID:92075678" CDS 1..2925 /locus_tag="PG986_006394" /note="Argonaute linker 1 domain; Argonaute linker 2 domain; consensus disorder prediction; N-terminal domain of argonaute; PAZ domain profile.; PAZ_argonaute_like; Piwi domain; Piwi domain profile." /codon_start=1 /product="piwi domain-containing protein" /protein_id="XP_066702478.1" /db_xref="GeneID:92075678" /translation="
MAPDKKRVVSGGSDAKSGSGQGSRSGSQSPAPASTSTSLPFRPADKKDDPKDGSEKQTEGGKGKKKERKKLTDLELVGKRVDLPIESYAAGAQESKAQLFEQRPAGALPGGEPKSKLYDVNAYEVKDYIKKNVPQYDVFVKDNKGAFVTDPPRGLVEKLWKHPTVQVGTGILSPGGIRWMFNGYNIAWSSPKMAGNEREVVVDFNPGSEKPNIFTLVVKYRKDVTMDALKAFLDDSASWSTGVLESINVLDHALRQTPSDSHKLIGRCFYNRQVPTPTDVGTVRNLNHYLEIIKGSFASIRLPGKRTGGLVVNADVSTTAFWKPLGLPFVITRMVPTTRDASLQAMLLPTTEGGLAVRPRAFQHLDHLVGLKFKVYIPKRAGGPHSPVLHTIKCFHFDETKPGGANSDNVGFTKIIDGKEHRVTISNHFREAYKYQIQHAKYPLVETMKKALFPLEVCQLEPYQQYRYKLDAEQTRTMLTHAATDPWVRKADIDAAVRTLNWGSDPNLRAFGITINSNMLQSQPRQLGFPTIYYGGSKDQPKDTKYNLRGRKFYQSQTFGAKKLTQVAFFSVGACCTIANLKTYSDNFKANYDRQGGLVESKWKVHWGDIPLQGGSPEGGLWAEFPKGKHEKYEFVFLVVGTANQAQYQCIKKHMDCRLRVPSQVLLYDSVKNNNIAYWSNVCLKAYAKLSGAPYITTTALPPPLAPETMMIGLDVSHAGPGSHQPSIAALCVSVDEHTASYTGSCQTNSYRKEIVDEDIMRSLLVDQAANWLKRRGKKPQHILYFRDGVSEGQFEGVIETEAMAIKRIVTERTAMHFGVAKESIPVKITVIVATKRHHIRSFNRGGKIANPEPGLYFEDVATHPKHWDFYLYSHKAHKGTARPVHYQVIKDEIKFGRAELANLIHRQCFQYCRCYTPVSLHPAVFYAHLASQRGRAHISSTTGPPVPMSDLSPKIRAPPLVSIGALAGSMWFV"
misc_feature 553..762 /locus_tag="PG986_006394" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 793..969 /locus_tag="PG986_006394" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature <1096..1380 /locus_tag="PG986_006394" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1168..1170,1234..1236,1273..1275,1285..1287, 1339..1341,1351..1353,1357..1359) /locus_tag="PG986_006394" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1516..2817 /locus_tag="PG986_006394" /note="PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component...; Region: Piwi-like; cl00628" /db_xref="CDD:412485" misc_feature order(1942..1944,1954..1956,1990..2001,2008..2010, 2032..2034,2041..2043,2053..2055,2065..2067) /locus_tag="PG986_006394" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:239208" misc_feature order(2143..2145,2149..2151,2362..2364,2785..2787) /locus_tag="PG986_006394" /note="active site" /db_xref="CDD:239208" ORIGIN
atggctcccgacaagaagcgcgtcgtgagcggaggcagcgatgcgaagtctggatcgggccagggatctcgaagcgggtctcagtcgcccgcaccggcttcgacttcgacttcgttacctttcagacctgccgacaagaaagacgaccccaaggatggatcggagaagcagaccgaaggtggcaagggaaagaagaaggagcggaagaaactaactgacctcgagctggttggaaaacgtgtcgatctgcccattgagtcttatgctgccggggcacaggagagcaaagcccagctgttcgagcagcggcctgcaggggccctgccagggggagagccaaagtcgaagctttacgatgtcaatgcctatgaagtgaaggactatatcaagaagaatgtccctcaatacgacgtgtttgtgaaggacaacaaaggggcgttcgttacggacccgcctcgaggccttgtcgagaagctgtggaaacatccgacagtacaggttggtactggcattttatctccaggaggcatccgctggatgttcaacggctacaatatcgcttggtcctctccgaagatggcaggtaatgagagggaggttgtggtggacttcaatcccgggtcggagaagcccaacatcttcactttggtggtcaagtacagaaaggacgtcactatggatgctctcaaggcatttctcgacgacagtgccagttggagtacgggcgtcctcgagagcatcaacgtcctcgaccatgccctccgccaaacgccttcggacagccacaagctgattgggcggtgcttttacaatcgacaggtcccgactcctacggatgtaggaactgtacgcaacctgaaccattacctcgagatcatcaaaggaagcttcgcttccatccggctccccggcaagaggactggcgggctagttgtcaacgccgatgtctctacgacagcgttctggaagccgctcggtctgccgtttgttattacaagaatggtcccaacgacgagagacgcttctctccaggccatgctactacctaccacggagggagggcttgcagtgaggccgcgagcattccagcaccttgaccatctcgttggattgaagttcaaggtttacatcccaaaaagggcgggcggcccacacagccctgtcctccacacgatcaagtgcttccactttgacgaaacgaagccaggaggcgccaactcggacaacgtcgggttcacgaagattattgacggcaaggagcaccgcgtcaccatatccaaccacttccgggaagcgtacaagtaccagatccagcatgcgaaataccctcttgtcgagaccatgaagaaggctcttttccccctggaggtctgccagttggagccttatcagcaataccgctacaagctggacgcggagcagacaagaacgatgctcacccacgccgccaccgacccgtgggtgcgcaaggcggacattgatgcggccgtcaggaccctcaactggggcagcgatccgaatttgcgagcattcggcatcacgataaacagcaacatgctgcagtctcagcctcgccagctgggattcccgacgatctactacggcgggtctaaagaccagcccaaagataccaaatacaatctcaggggcaggaagttttaccaatcccagacgtttggagccaagaagttgactcaagtggcgttcttctctgtcggcgcttgctgcacgattgccaatctcaaaacgtactccgacaacttcaaggccaactacgaccgacagggcgggctcgttgagtcgaaatggaaggtacattggggcgacatcccgcttcaaggcgggtcaccggaaggaggcctttgggcggagttccccaagggcaaacacgagaagtatgaattcgtatttctggtggtaggaacggccaatcaggcccagtaccaatgcatcaagaagcacatggattgcagattgcgggtcccttctcaggttctcttgtacgacagcgtgaaaaacaacaatatcgcctactggtcaaacgtctgtttgaaagcctacgccaagctgagcggcgcgccttacatcacgacgacggctctgccgcccccgcttgctcccgagacgatgatgattggcctcgacgtctcccatgctgggcctggaagccaccagccatcgatagcggccttgtgcgtttctgtggatgagcacactgcctcctacaccggttcatgtcagacaaacagttaccggaaggagattgtcgacgaggatattatgcgatccttactcgtagaccaggcggccaactggctcaagcgacggggcaagaagccgcaacacattctctacttccgcgatggcgtgtcggagggacaattcgagggcgtcatcgagaccgaagccatggctattaagagaatagtcacggagcgcaccgcgatgcactttggcgtcgccaaagaaagcatcccggtcaagatcaccgtcatcgtcgcaacaaaacgacaccacatccgctctttcaaccggggcgggaagatcgccaacccggagcccggtctctatttcgaggacgtggcgactcatcccaagcattgggacttctacctctactcgcacaaggcccacaaaggcacagctcgtcccgtccactaccaagtcatcaaggacgagatcaagttcggccgggccgagcttgccaacctcattcaccgccagtgtttccagtactgtcgctgctacactcccgtctcactgcatccggccgtcttctatgcccacctggcctctcagagaggacgagcgcacatcagttccactacgggaccaccggtacccatgtccgacttgagccccaagatcagggcacctccgttggtctcaatcggtgcactggcgggaagcatgtggttcgtctag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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