GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2025-02-02 17:42:11, GGRNA.v2 : RefSeq release 227 (Nov, 2024)

LOCUS       XM_066842616            2925 bp    mRNA    linear   PLN 31-JUL-2024
DEFINITION  Apiospora aurea piwi domain-containing protein (PG986_006394),
            partial mRNA.
ACCESSION   XM_066842616
VERSION     XM_066842616.1
DBLINK      BioProject: PRJNA1140273
            BioSample: SAMN32709951
KEYWORDS    RefSeq.
SOURCE      Apiospora aurea
  ORGANISM  Apiospora aurea
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Sordariomycetes; Xylariomycetidae; Xylariales; Apiosporaceae;
            Apiospora.
REFERENCE   1  (bases 1 to 2925)
  AUTHORS   Sorensen,T.
  TITLE     Analysis of 21 Apiospora genomes using comparative genomics revels
            a genus with tremendous synthesis potential of carbohydrate active
            enzymes and secondary metabolites
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2925)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUL-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2925)
  AUTHORS   Sorensen,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2023) Department of Biosciences and Chemistry,
            Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland
            9220, Denmark
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_027117391).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..2925
                     /organism="Apiospora aurea"
                     /mol_type="mRNA"
                     /strain="CBS 24483"
                     /culture_collection="CBS:24483"
                     /db_xref="taxon:335848"
                     /chromosome="Unknown"
     gene            <1..>2925
                     /locus_tag="PG986_006394"
                     /db_xref="GeneID:92075678"
     CDS             1..2925
                     /locus_tag="PG986_006394"
                     /note="Argonaute linker 1 domain; Argonaute linker 2
                     domain; consensus disorder prediction; N-terminal domain
                     of argonaute; PAZ domain profile.; PAZ_argonaute_like;
                     Piwi domain; Piwi domain profile."
                     /codon_start=1
                     /product="piwi domain-containing protein"
                     /protein_id="XP_066702478.1"
                     /db_xref="GeneID:92075678"
                     /translation="
MAPDKKRVVSGGSDAKSGSGQGSRSGSQSPAPASTSTSLPFRPADKKDDPKDGSEKQTEGGKGKKKERKKLTDLELVGKRVDLPIESYAAGAQESKAQLFEQRPAGALPGGEPKSKLYDVNAYEVKDYIKKNVPQYDVFVKDNKGAFVTDPPRGLVEKLWKHPTVQVGTGILSPGGIRWMFNGYNIAWSSPKMAGNEREVVVDFNPGSEKPNIFTLVVKYRKDVTMDALKAFLDDSASWSTGVLESINVLDHALRQTPSDSHKLIGRCFYNRQVPTPTDVGTVRNLNHYLEIIKGSFASIRLPGKRTGGLVVNADVSTTAFWKPLGLPFVITRMVPTTRDASLQAMLLPTTEGGLAVRPRAFQHLDHLVGLKFKVYIPKRAGGPHSPVLHTIKCFHFDETKPGGANSDNVGFTKIIDGKEHRVTISNHFREAYKYQIQHAKYPLVETMKKALFPLEVCQLEPYQQYRYKLDAEQTRTMLTHAATDPWVRKADIDAAVRTLNWGSDPNLRAFGITINSNMLQSQPRQLGFPTIYYGGSKDQPKDTKYNLRGRKFYQSQTFGAKKLTQVAFFSVGACCTIANLKTYSDNFKANYDRQGGLVESKWKVHWGDIPLQGGSPEGGLWAEFPKGKHEKYEFVFLVVGTANQAQYQCIKKHMDCRLRVPSQVLLYDSVKNNNIAYWSNVCLKAYAKLSGAPYITTTALPPPLAPETMMIGLDVSHAGPGSHQPSIAALCVSVDEHTASYTGSCQTNSYRKEIVDEDIMRSLLVDQAANWLKRRGKKPQHILYFRDGVSEGQFEGVIETEAMAIKRIVTERTAMHFGVAKESIPVKITVIVATKRHHIRSFNRGGKIANPEPGLYFEDVATHPKHWDFYLYSHKAHKGTARPVHYQVIKDEIKFGRAELANLIHRQCFQYCRCYTPVSLHPAVFYAHLASQRGRAHISSTTGPPVPMSDLSPKIRAPPLVSIGALAGSMWFV"
     misc_feature    553..762
                     /locus_tag="PG986_006394"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:465134"
     misc_feature    793..969
                     /locus_tag="PG986_006394"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:462567"
     misc_feature    <1096..1380
                     /locus_tag="PG986_006394"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1168..1170,1234..1236,1273..1275,1285..1287,
                     1339..1341,1351..1353,1357..1359)
                     /locus_tag="PG986_006394"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1516..2817
                     /locus_tag="PG986_006394"
                     /note="PIWI domain. Domain found in proteins involved in
                     RNA silencing. RNA silencing refers to a group of related
                     gene-silencing mechanisms mediated by short RNA molecules,
                     including siRNAs, miRNAs, and heterochromatin-related
                     guide RNAs. The central component...; Region: Piwi-like;
                     cl00628"
                     /db_xref="CDD:412485"
     misc_feature    order(1942..1944,1954..1956,1990..2001,2008..2010,
                     2032..2034,2041..2043,2053..2055,2065..2067)
                     /locus_tag="PG986_006394"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:239208"
     misc_feature    order(2143..2145,2149..2151,2362..2364,2785..2787)
                     /locus_tag="PG986_006394"
                     /note="active site"
                     /db_xref="CDD:239208"
ORIGIN      
atggctcccgacaagaagcgcgtcgtgagcggaggcagcgatgcgaagtctggatcgggccagggatctcgaagcgggtctcagtcgcccgcaccggcttcgacttcgacttcgttacctttcagacctgccgacaagaaagacgaccccaaggatggatcggagaagcagaccgaaggtggcaagggaaagaagaaggagcggaagaaactaactgacctcgagctggttggaaaacgtgtcgatctgcccattgagtcttatgctgccggggcacaggagagcaaagcccagctgttcgagcagcggcctgcaggggccctgccagggggagagccaaagtcgaagctttacgatgtcaatgcctatgaagtgaaggactatatcaagaagaatgtccctcaatacgacgtgtttgtgaaggacaacaaaggggcgttcgttacggacccgcctcgaggccttgtcgagaagctgtggaaacatccgacagtacaggttggtactggcattttatctccaggaggcatccgctggatgttcaacggctacaatatcgcttggtcctctccgaagatggcaggtaatgagagggaggttgtggtggacttcaatcccgggtcggagaagcccaacatcttcactttggtggtcaagtacagaaaggacgtcactatggatgctctcaaggcatttctcgacgacagtgccagttggagtacgggcgtcctcgagagcatcaacgtcctcgaccatgccctccgccaaacgccttcggacagccacaagctgattgggcggtgcttttacaatcgacaggtcccgactcctacggatgtaggaactgtacgcaacctgaaccattacctcgagatcatcaaaggaagcttcgcttccatccggctccccggcaagaggactggcgggctagttgtcaacgccgatgtctctacgacagcgttctggaagccgctcggtctgccgtttgttattacaagaatggtcccaacgacgagagacgcttctctccaggccatgctactacctaccacggagggagggcttgcagtgaggccgcgagcattccagcaccttgaccatctcgttggattgaagttcaaggtttacatcccaaaaagggcgggcggcccacacagccctgtcctccacacgatcaagtgcttccactttgacgaaacgaagccaggaggcgccaactcggacaacgtcgggttcacgaagattattgacggcaaggagcaccgcgtcaccatatccaaccacttccgggaagcgtacaagtaccagatccagcatgcgaaataccctcttgtcgagaccatgaagaaggctcttttccccctggaggtctgccagttggagccttatcagcaataccgctacaagctggacgcggagcagacaagaacgatgctcacccacgccgccaccgacccgtgggtgcgcaaggcggacattgatgcggccgtcaggaccctcaactggggcagcgatccgaatttgcgagcattcggcatcacgataaacagcaacatgctgcagtctcagcctcgccagctgggattcccgacgatctactacggcgggtctaaagaccagcccaaagataccaaatacaatctcaggggcaggaagttttaccaatcccagacgtttggagccaagaagttgactcaagtggcgttcttctctgtcggcgcttgctgcacgattgccaatctcaaaacgtactccgacaacttcaaggccaactacgaccgacagggcgggctcgttgagtcgaaatggaaggtacattggggcgacatcccgcttcaaggcgggtcaccggaaggaggcctttgggcggagttccccaagggcaaacacgagaagtatgaattcgtatttctggtggtaggaacggccaatcaggcccagtaccaatgcatcaagaagcacatggattgcagattgcgggtcccttctcaggttctcttgtacgacagcgtgaaaaacaacaatatcgcctactggtcaaacgtctgtttgaaagcctacgccaagctgagcggcgcgccttacatcacgacgacggctctgccgcccccgcttgctcccgagacgatgatgattggcctcgacgtctcccatgctgggcctggaagccaccagccatcgatagcggccttgtgcgtttctgtggatgagcacactgcctcctacaccggttcatgtcagacaaacagttaccggaaggagattgtcgacgaggatattatgcgatccttactcgtagaccaggcggccaactggctcaagcgacggggcaagaagccgcaacacattctctacttccgcgatggcgtgtcggagggacaattcgagggcgtcatcgagaccgaagccatggctattaagagaatagtcacggagcgcaccgcgatgcactttggcgtcgccaaagaaagcatcccggtcaagatcaccgtcatcgtcgcaacaaaacgacaccacatccgctctttcaaccggggcgggaagatcgccaacccggagcccggtctctatttcgaggacgtggcgactcatcccaagcattgggacttctacctctactcgcacaaggcccacaaaggcacagctcgtcccgtccactaccaagtcatcaaggacgagatcaagttcggccgggccgagcttgccaacctcattcaccgccagtgtttccagtactgtcgctgctacactcccgtctcactgcatccggccgtcttctatgcccacctggcctctcagagaggacgagcgcacatcagttccactacgggaccaccggtacccatgtccgacttgagccccaagatcagggcacctccgttggtctcaatcggtgcactggcgggaagcatgtggttcgtctag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]