2025-03-10 04:57:02, GGRNA.v2 : RefSeq release 228 (Jan, 2025)
LOCUS XM_066821094 3165 bp mRNA linear PLN 31-JUL-2024 DEFINITION Apiospora marii uncharacterized protein (PG985_001325), partial mRNA. ACCESSION XM_066821094 VERSION XM_066821094.1 DBLINK BioProject: PRJNA1140273 BioSample: SAMN32718006 KEYWORDS RefSeq. SOURCE Apiospora marii ORGANISM Apiospora marii Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Xylariomycetidae; Xylariales; Apiosporaceae; Apiospora. REFERENCE 1 (bases 1 to 3165) AUTHORS Sorensen,T. TITLE Analysis of 21 Apiospora genomes using comparative genomics revels a genus with tremendous synthesis potential of carbohydrate active enzymes and secondary metabolites JOURNAL Unpublished REFERENCE 2 (bases 1 to 3165) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (26-JUL-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3165) AUTHORS Sorensen,T. TITLE Direct Submission JOURNAL Submitted (13-JAN-2023) Department of Biosciences and Chemistry, Aalborg university, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_027117372). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3165 /organism="Apiospora marii" /mol_type="mRNA" /strain="CBS 49790" /culture_collection="CBS:49790" /db_xref="taxon:335849" /chromosome="Unknown" gene <1..>3165 /locus_tag="PG985_001325" /db_xref="GeneID:92054155" CDS 1..3165 /locus_tag="PG985_001325" /note="Argonaute linker 1 domain; Argonaute linker 2 domain; consensus disorder prediction; PAZ domain; PAZ_argonaute_like; Piwi domain; Piwi domain profile." /codon_start=1 /product="uncharacterized protein" /protein_id="XP_066691973.1" /db_xref="GeneID:92054155" /translation="
MVAAGTLYSFTPLPPRRGSLPHPTLSEYRSEHVASYSDRRLSVTNIDAMGSKAKPSQDELGKAQAVHRFPSRPAYGRNAFSTGPHSLLANYFAIDFLKGSKKTWKRYNFKVHHTDDKNDVPKGFKLQQIIKQAVRSLGVEDDKYASDFKSQLIVLEGTPLKKREVIEHFTNDQGRAKPYRVQLISETDIVFDGLKDFTAKQALSATDLFNPYTRFADVLDACGIVLGHKARSDIGINSLRSGRFFRFEPPSNRFDMAGIPETLMMLIRGYFQSVRPASASTSPFLLNANVAYGVFRQPEELGRVIKTRNQFQSQARYFEYLADINRQLAKAKILYSAPTLGSSSIKKRNKVMLGLADQNRRTGGTPSAHPPRFAGGARFGGPKHVAFFLDGSGNMSSSLQAWYGNTSDHYISVYDYFHKQFGKRLNINLPLIDIGTPKKPIFVPAELCKIKPGQLIASKLDRAGSQAMINFACKGPGENQGYIKNMGRQVLQLDNNRTLEHFGLEVAKNLQQVQGRLLRPPTVSYQSDRASLEQVGGCGWYRSSGKSGAGKFVKPSKEQIKWMYIHFYKSQPQKSDIDPLRNALDKFGTHLTKEMGLNMSVSPDGGIPTHGHNEQEQIKMLRRMFDNPPQGRSLPEYVLVVLPTDSATLYREIKLMGDIRFGFHTVCIVKEKLFRPLTEDKKKRDRELSIWDGLGFKLNLKAGGNNHRLTGENVPLLIQHGKTMFVGYDVTHPTNFDSDDEETANPQDSTGEEQSVDSKMGSLKLEPQGAHDRRLPPSQIALVASLDKDLGQWPAVTWTNPGNKELLGAELYHHFQGRLKLYYERNKQTLPDSVVIYRDGVSEGQYEQVTGIELPRIKKACEDVCKKYGKGSIAITLVVAVKRHQTRFYPKDSKDRRIADDKGNPKPGTIVDNTVTVKSHWDFYLQSHAAIKGEYDRVSVNLNEASTNSLVWDHIGTARPAHYTVLHDEIFRARYKNDAADQLEQVTHCISYAFGRATKAVSLCTPAKYADMACTRARKHMWELYEGDPEAQVDQNEVLGRSVHEKLKDTMYYI"
misc_feature 721..891 /locus_tag="PG985_001325" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature <1228..1350 /locus_tag="PG985_001325" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature 1492..3063 /locus_tag="PG985_001325" /note="PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component...; Region: Piwi-like; cl00628" /db_xref="CDD:412485" misc_feature order(1948..1950,1960..1962,1996..2007,2014..2016, 2068..2070,2077..2079,2089..2091,2101..2103) /locus_tag="PG985_001325" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:239208" misc_feature order(2185..2187,2191..2193,2515..2517,3031..3033) /locus_tag="PG985_001325" /note="active site" /db_xref="CDD:239208" ORIGIN
atggtcgctgcggggactctctactcattcacaccattaccgccacgtcgtggttctctcccccatcccacactttctgagtacagatccgaacacgtcgcttcttactcggataggcgtctttcagtcaccaacattgatgcaatggggtcaaaggccaagccttcccaggatgagcttggtaaagcccaagccgttcataggtttccctcaaggcctgcgtatggtagaaatgcattctccactggccctcatagcctgctggcaaattactttgcgatcgatttcttgaagggctccaagaagacgtggaagcggtacaacttcaaggtccaccatacggatgacaagaacgacgtgcctaagggcttcaagctacagcagatcatcaagcaggctgtccgcagtctgggagtcgaagatgacaagtatgcatccgacttcaagagtcagctcatcgtcttggaaggtacgccgctcaagaagcgcgaagtcattgagcacttcaccaacgaccagggccgcgccaaaccgtatcgcgtccagcttataagcgagaccgatatcgtcttcgatggtctgaaggacttcaccgcgaagcaggcactgtctgccacggacctcttcaacccctatacccgtttcgcagacgttctcgacgcctgcggcatcgttctcggtcacaaggcccgcagcgatattggcatcaactccttgagaagtgggcgtttcttccgttttgaaccccccagtaatcgctttgatatggcgggaatacccgaaacactgatgatgctgattcgaggatatttccagagcgtccgtccggcttcggcatctacttcccctttccttctcaatgccaacgtggcttacggcgttttcagacagcctgaggagctgggtcgagtcataaagacccggaaccagttccaaagccaggccaggtacttcgagtatcttgctgacatcaaccgccagttggcaaaggccaaaattctctattccgccccgacactgggctctagttctatcaagaagcgcaacaaagtcatgttggggcttgcggaccagaaccgaagaactggaggcacacctagtgcccatcctccacgatttgccgggggcgcccgattcggtggtcccaagcatgtcgctttcttcctcgatggcagtggtaacatgagcagtagtcttcaggcgtggtacggcaacacgagcgatcattacatcagcgtgtacgactatttccacaagcaattcgggaaacgtcttaacataaacttgccacttatcgatatcggcacgccaaagaaacccatcttcgtgcctgcggagttgtgcaagatcaagccaggccagctaattgcgtcgaaactggaccgcgctggctcacaagccatgattaactttgcatgcaaggggcctggtgaaaaccagggctatattaagaacatgggccgtcaagtactgcagttggacaataataggacgctggaacacttcggcctcgaagttgcaaagaaccttcaacaggttcagggtcggcttttacgccctcctactgtgagctatcagtctgaccgcgcgtccctcgagcaagttggcggctgtggatggtatcgatcaagtgggaagtctggcgccggaaagttcgtcaagcctagcaaggaacagatcaaatggatgtatattcatttttacaagtcgcagcctcaaaaaagcgatatcgatccgcttaggaatgcccttgataagtttggaactcatctgacgaaagagatgggactcaacatgagtgtttcgcccgacggtggcattccaactcacgggcacaacgagcaagagcaaatcaagatgctaaggcggatgttcgacaatccaccacagggaaggtctttgccggagtatgtcttagttgtccttcctacagacagcgccactctatatcgggaaatcaagctcatgggagatattcgattcgggtttcacacggtgtgcatcgtaaaggagaagctcttcagaccgctcaccgaagataagaagaaacgagatcgagagctttctatctgggatgggttgggtttcaaactcaatctcaaggctggcggtaataaccatcggcttactggtgaaaatgtgcctctgctcattcaacacggcaagaccatgttcgtcggctacgatgttacgcatcctaccaacttcgattcggacgacgaggaaacagcgaatcctcaggactccacaggcgaggaacagtctgtggacagcaagatgggtagcctgaagctcgaacctcagggtgctcatgataggcgtctgcctccctcgcagattgctctcgtggcgagcctggataaggacctgggtcaatggcccgccgtgacttggacaaacccggggaacaaggaattgcttggcgcggagctgtaccaccatttccagggccggctgaagctttactatgagcggaacaagcagacactcccagacagcgttgtcatttatcgtgacggggtttctgaaggacagtatgagcaggtgaccggaattgagctaccccggattaaaaaggcatgcgaggacgtctgtaagaaatacgggaagggttccattgcaatcactctcgtcgtcgcagtcaagcgccaccaaacacgattctatcccaaagacagcaaagacagaagaatcgccgacgataagggcaatcctaagcccgggactattgtggacaacaccgtgaccgtcaagagccactgggatttctacctgcaatcccacgcggcaatcaagggtgagtacgatcgtgtttctgtcaacctgaacgaagcctcaactaattcattggtgtgggatcatataggtaccgcccgtcccgcccactacacggtcctacacgacgagatcttccgggctcggtacaagaacgacgcggccgaccagctcgagcaggtgacgcactgcatcagctacgcgttcgggcgggccaccaaggccgtcagcctgtgtacgccggccaaatacgccgacatggcgtgcacgcgggcgcgaaagcacatgtgggagctttacgagggagatcccgaggcacaggttgatcagaacgaggtgcttggacgcagcgtgcatgagaaactcaaagacaccatgtactacatctga
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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