GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2025-03-10 04:57:02, GGRNA.v2 : RefSeq release 228 (Jan, 2025)

LOCUS       XM_066821094            3165 bp    mRNA    linear   PLN 31-JUL-2024
DEFINITION  Apiospora marii uncharacterized protein (PG985_001325), partial
            mRNA.
ACCESSION   XM_066821094
VERSION     XM_066821094.1
DBLINK      BioProject: PRJNA1140273
            BioSample: SAMN32718006
KEYWORDS    RefSeq.
SOURCE      Apiospora marii
  ORGANISM  Apiospora marii
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Sordariomycetes; Xylariomycetidae; Xylariales; Apiosporaceae;
            Apiospora.
REFERENCE   1  (bases 1 to 3165)
  AUTHORS   Sorensen,T.
  TITLE     Analysis of 21 Apiospora genomes using comparative genomics revels
            a genus with tremendous synthesis potential of carbohydrate active
            enzymes and secondary metabolites
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3165)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUL-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3165)
  AUTHORS   Sorensen,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2023) Department of Biosciences and Chemistry,
            Aalborg university, Fredrik Bajers Vej 7H, Aalborg, Nordjylland
            9220, Denmark
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_027117372).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..3165
                     /organism="Apiospora marii"
                     /mol_type="mRNA"
                     /strain="CBS 49790"
                     /culture_collection="CBS:49790"
                     /db_xref="taxon:335849"
                     /chromosome="Unknown"
     gene            <1..>3165
                     /locus_tag="PG985_001325"
                     /db_xref="GeneID:92054155"
     CDS             1..3165
                     /locus_tag="PG985_001325"
                     /note="Argonaute linker 1 domain; Argonaute linker 2
                     domain; consensus disorder prediction; PAZ domain;
                     PAZ_argonaute_like; Piwi domain; Piwi domain profile."
                     /codon_start=1
                     /product="uncharacterized protein"
                     /protein_id="XP_066691973.1"
                     /db_xref="GeneID:92054155"
                     /translation="
MVAAGTLYSFTPLPPRRGSLPHPTLSEYRSEHVASYSDRRLSVTNIDAMGSKAKPSQDELGKAQAVHRFPSRPAYGRNAFSTGPHSLLANYFAIDFLKGSKKTWKRYNFKVHHTDDKNDVPKGFKLQQIIKQAVRSLGVEDDKYASDFKSQLIVLEGTPLKKREVIEHFTNDQGRAKPYRVQLISETDIVFDGLKDFTAKQALSATDLFNPYTRFADVLDACGIVLGHKARSDIGINSLRSGRFFRFEPPSNRFDMAGIPETLMMLIRGYFQSVRPASASTSPFLLNANVAYGVFRQPEELGRVIKTRNQFQSQARYFEYLADINRQLAKAKILYSAPTLGSSSIKKRNKVMLGLADQNRRTGGTPSAHPPRFAGGARFGGPKHVAFFLDGSGNMSSSLQAWYGNTSDHYISVYDYFHKQFGKRLNINLPLIDIGTPKKPIFVPAELCKIKPGQLIASKLDRAGSQAMINFACKGPGENQGYIKNMGRQVLQLDNNRTLEHFGLEVAKNLQQVQGRLLRPPTVSYQSDRASLEQVGGCGWYRSSGKSGAGKFVKPSKEQIKWMYIHFYKSQPQKSDIDPLRNALDKFGTHLTKEMGLNMSVSPDGGIPTHGHNEQEQIKMLRRMFDNPPQGRSLPEYVLVVLPTDSATLYREIKLMGDIRFGFHTVCIVKEKLFRPLTEDKKKRDRELSIWDGLGFKLNLKAGGNNHRLTGENVPLLIQHGKTMFVGYDVTHPTNFDSDDEETANPQDSTGEEQSVDSKMGSLKLEPQGAHDRRLPPSQIALVASLDKDLGQWPAVTWTNPGNKELLGAELYHHFQGRLKLYYERNKQTLPDSVVIYRDGVSEGQYEQVTGIELPRIKKACEDVCKKYGKGSIAITLVVAVKRHQTRFYPKDSKDRRIADDKGNPKPGTIVDNTVTVKSHWDFYLQSHAAIKGEYDRVSVNLNEASTNSLVWDHIGTARPAHYTVLHDEIFRARYKNDAADQLEQVTHCISYAFGRATKAVSLCTPAKYADMACTRARKHMWELYEGDPEAQVDQNEVLGRSVHEKLKDTMYYI"
     misc_feature    721..891
                     /locus_tag="PG985_001325"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:462567"
     misc_feature    <1228..1350
                     /locus_tag="PG985_001325"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    1492..3063
                     /locus_tag="PG985_001325"
                     /note="PIWI domain. Domain found in proteins involved in
                     RNA silencing. RNA silencing refers to a group of related
                     gene-silencing mechanisms mediated by short RNA molecules,
                     including siRNAs, miRNAs, and heterochromatin-related
                     guide RNAs. The central component...; Region: Piwi-like;
                     cl00628"
                     /db_xref="CDD:412485"
     misc_feature    order(1948..1950,1960..1962,1996..2007,2014..2016,
                     2068..2070,2077..2079,2089..2091,2101..2103)
                     /locus_tag="PG985_001325"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:239208"
     misc_feature    order(2185..2187,2191..2193,2515..2517,3031..3033)
                     /locus_tag="PG985_001325"
                     /note="active site"
                     /db_xref="CDD:239208"
ORIGIN      
atggtcgctgcggggactctctactcattcacaccattaccgccacgtcgtggttctctcccccatcccacactttctgagtacagatccgaacacgtcgcttcttactcggataggcgtctttcagtcaccaacattgatgcaatggggtcaaaggccaagccttcccaggatgagcttggtaaagcccaagccgttcataggtttccctcaaggcctgcgtatggtagaaatgcattctccactggccctcatagcctgctggcaaattactttgcgatcgatttcttgaagggctccaagaagacgtggaagcggtacaacttcaaggtccaccatacggatgacaagaacgacgtgcctaagggcttcaagctacagcagatcatcaagcaggctgtccgcagtctgggagtcgaagatgacaagtatgcatccgacttcaagagtcagctcatcgtcttggaaggtacgccgctcaagaagcgcgaagtcattgagcacttcaccaacgaccagggccgcgccaaaccgtatcgcgtccagcttataagcgagaccgatatcgtcttcgatggtctgaaggacttcaccgcgaagcaggcactgtctgccacggacctcttcaacccctatacccgtttcgcagacgttctcgacgcctgcggcatcgttctcggtcacaaggcccgcagcgatattggcatcaactccttgagaagtgggcgtttcttccgttttgaaccccccagtaatcgctttgatatggcgggaatacccgaaacactgatgatgctgattcgaggatatttccagagcgtccgtccggcttcggcatctacttcccctttccttctcaatgccaacgtggcttacggcgttttcagacagcctgaggagctgggtcgagtcataaagacccggaaccagttccaaagccaggccaggtacttcgagtatcttgctgacatcaaccgccagttggcaaaggccaaaattctctattccgccccgacactgggctctagttctatcaagaagcgcaacaaagtcatgttggggcttgcggaccagaaccgaagaactggaggcacacctagtgcccatcctccacgatttgccgggggcgcccgattcggtggtcccaagcatgtcgctttcttcctcgatggcagtggtaacatgagcagtagtcttcaggcgtggtacggcaacacgagcgatcattacatcagcgtgtacgactatttccacaagcaattcgggaaacgtcttaacataaacttgccacttatcgatatcggcacgccaaagaaacccatcttcgtgcctgcggagttgtgcaagatcaagccaggccagctaattgcgtcgaaactggaccgcgctggctcacaagccatgattaactttgcatgcaaggggcctggtgaaaaccagggctatattaagaacatgggccgtcaagtactgcagttggacaataataggacgctggaacacttcggcctcgaagttgcaaagaaccttcaacaggttcagggtcggcttttacgccctcctactgtgagctatcagtctgaccgcgcgtccctcgagcaagttggcggctgtggatggtatcgatcaagtgggaagtctggcgccggaaagttcgtcaagcctagcaaggaacagatcaaatggatgtatattcatttttacaagtcgcagcctcaaaaaagcgatatcgatccgcttaggaatgcccttgataagtttggaactcatctgacgaaagagatgggactcaacatgagtgtttcgcccgacggtggcattccaactcacgggcacaacgagcaagagcaaatcaagatgctaaggcggatgttcgacaatccaccacagggaaggtctttgccggagtatgtcttagttgtccttcctacagacagcgccactctatatcgggaaatcaagctcatgggagatattcgattcgggtttcacacggtgtgcatcgtaaaggagaagctcttcagaccgctcaccgaagataagaagaaacgagatcgagagctttctatctgggatgggttgggtttcaaactcaatctcaaggctggcggtaataaccatcggcttactggtgaaaatgtgcctctgctcattcaacacggcaagaccatgttcgtcggctacgatgttacgcatcctaccaacttcgattcggacgacgaggaaacagcgaatcctcaggactccacaggcgaggaacagtctgtggacagcaagatgggtagcctgaagctcgaacctcagggtgctcatgataggcgtctgcctccctcgcagattgctctcgtggcgagcctggataaggacctgggtcaatggcccgccgtgacttggacaaacccggggaacaaggaattgcttggcgcggagctgtaccaccatttccagggccggctgaagctttactatgagcggaacaagcagacactcccagacagcgttgtcatttatcgtgacggggtttctgaaggacagtatgagcaggtgaccggaattgagctaccccggattaaaaaggcatgcgaggacgtctgtaagaaatacgggaagggttccattgcaatcactctcgtcgtcgcagtcaagcgccaccaaacacgattctatcccaaagacagcaaagacagaagaatcgccgacgataagggcaatcctaagcccgggactattgtggacaacaccgtgaccgtcaagagccactgggatttctacctgcaatcccacgcggcaatcaagggtgagtacgatcgtgtttctgtcaacctgaacgaagcctcaactaattcattggtgtgggatcatataggtaccgcccgtcccgcccactacacggtcctacacgacgagatcttccgggctcggtacaagaacgacgcggccgaccagctcgagcaggtgacgcactgcatcagctacgcgttcgggcgggccaccaaggccgtcagcctgtgtacgccggccaaatacgccgacatggcgtgcacgcgggcgcgaaagcacatgtgggagctttacgagggagatcccgaggcacaggttgatcagaacgaggtgcttggacgcagcgtgcatgagaaactcaaagacaccatgtactacatctga
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]