2025-02-01 17:58:22, GGRNA.v2 : RefSeq release 227 (Nov, 2024)
LOCUS XM_066818019 3150 bp mRNA linear PLN 31-JUL-2024 DEFINITION Apiospora hydei protein argonaute (PG997_013705), partial mRNA. ACCESSION XM_066818019 VERSION XM_066818019.1 DBLINK BioProject: PRJNA1140273 BioSample: SAMN32723710 KEYWORDS RefSeq. SOURCE Apiospora hydei ORGANISM Apiospora hydei Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Xylariomycetidae; Xylariales; Apiosporaceae; Apiospora. REFERENCE 1 (bases 1 to 3150) AUTHORS Sorensen,T. TITLE Analysis of 21 Apiospora genomes using comparative genomics revels a genus with tremendous synthesis potential of carbohydrate active enzymes and secondary metabolites JOURNAL Unpublished REFERENCE 2 (bases 1 to 3150) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (26-JUL-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3150) AUTHORS Sorensen,T. TITLE Direct Submission JOURNAL Submitted (17-JAN-2023) Department of Biosciences and Chemistry, Aalborg university, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_027117368). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3150 /organism="Apiospora hydei" /mol_type="mRNA" /strain="CBS 114990" /culture_collection="CBS:114990" /type_material="culture from type material of Arthrinium hydei" /db_xref="taxon:1337664" /chromosome="Unknown" gene <1..>3150 /locus_tag="PG997_013705" /db_xref="GeneID:92051079" CDS <1..3150 /locus_tag="PG997_013705" /note="Argonaute linker 1 domain; Argonaute linker 2 domain; consensus disorder prediction; Mid domain of argonaute; N-terminal domain of argonaute; PAZ domain; PAZ domain profile.; PAZ_argonaute_like; Piwi domain; Piwi domain profile.; Piwi_ago-like" /codon_start=1 /product="protein argonaute" /protein_id="XP_066663711.1" /db_xref="GeneID:92051079" /translation="
SSTKSIITTTMSGFNQQGNGPRHAAIERVAGMNLDGSSDRGSVSGSPSRGSHHSRSGSNAGSQTGSQAGEGSRSRSGSTASGPVKQQSPFPPGTGVDPARMGGDGREPLTDEQLIGKRIDLPAEAYKKFDGSFTQFAKRPGFSTDGKGIQVQVNIFPVTKWPTGDIVQYDVNVSPNDKDSRALVRKVWESAPVQAELKKTGSKWLFDGHKLACELRSTAKFPRGEARVAVDLDRLAGKEPRPGKTGVYYIQIRQATSIRMQVLQDYLKRKCDWDKSVLQCMNFLDHLLRQYPSENMISIKRNFYNKKDNPMRLDSYTDVRKGTYSAFRLCEMNNMSKGSGLAVNVDVANTAFWNTMGTLADTARAMLSPPSAQNEKQMVPWPKMAEILRPVQARDRNGNIVWQQSEPFQKLRRLAKLKITVNHRGKDQSDKVYTIKRIAFEQSMANWGADAQHYTFQRKHKDGKVDPPITIHNYFMQKYKARLQYPDLPLIETMRDGFYPMEACRLQPFQRYTYKLDPEQTSKMIKFAVTRPVQRSAAINTCMQGLHWESDPYFKQYGLQIAQRMLVTPARLLQNPEVHFSGSKINPGMTGRWDLRGKKFLESNPVPIQSWAFIGVGSNDGYTVQEDALKNFAQTFKRAYGQHGGVIRKDPFVKVYPFNVPYPQMCEQAYKECGQHFKATPQVIFFVVSTRNSLVYERIKKNMDCRFCTVSQVMLADHVRKANLQYCGNVAMKVNAKLGGVTCRAAPMGVTSPMPYYSVPTMIIGLDVSHAAPGSGRPSMAAMTVSTDKTATRYAASVQTNGYRGEIVEGINMRFLLGRLLKYWINTNKCHPKHVYFFRDGVAEGQFGQVIDKEIKEIKRIFRDAGCEVPRVTVMIATKRHHIRFFPNPQDKGSADKNANPLPGTVVEHDATHPFHWDFYLSSHVAIQGTARPVHYQVILDEANCNPNDLQRMLYHHCYQYQRSTTPVSLHPAVYYSHLASVRAASHEDIAASQKELPSGKAGFPLAKAPSTVYGSGGQNREAPPLLAMENPIADKANIAHINTTMWYV"
misc_feature 619..864 /locus_tag="PG997_013705" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 892..1059 /locus_tag="PG997_013705" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1207..1575 /locus_tag="PG997_013705" /note="PAZ domain; Region: PAZ; pfam02170" /db_xref="CDD:460472" misc_feature 1654..2964 /locus_tag="PG997_013705" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2086..2088,2098..2100,2134..2145,2152..2154, 2176..2178,2185..2187,2197..2199,2209..2211) /locus_tag="PG997_013705" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2299..2301,2305..2307,2518..2520,2932..2934) /locus_tag="PG997_013705" /note="active site" /db_xref="CDD:240015" ORIGIN
tcgtcaaccaagtccatcatcaccaccacgatgtcgggtttcaaccagcagggcaatggtccgcgacacgccgccattgagcgtgtcgccggcatgaaccttgatggatcttctgatcgtggctctgtcagcggcagtccttcgcgtggttctcaccactcacgctcgggctccaatgcgggtagccagactggaagccaagctggcgagggctcccgctcccgatcgggctctaccgccagtggacctgtcaagcagcagtcacctttccctcctggaactggtgttgatcccgctcgcatgggcggtgacggacgtgagccgcttaccgatgagcagctcattggcaagcgaattgatcttcccgctgaggcctacaagaagtttgatggatcgttcactcagttcgccaagcgacctggcttcagcaccgatggcaagggtattcaggttcaagtcaacatctttccggtgacaaagtggcccaccggagatatcgtccaatatgatgtcaacgtcagccccaatgataaggactcccgagccctcgtcagaaaggtctgggagagcgccccagtccaggctgagctgaagaagactggcagcaagtggctgtttgacggtcacaagctcgcttgtgagcttaggtctacggctaaattccctcgtggagaggcacgagttgctgtcgatctggaccgacttgcaggcaaggagccccgacctggcaagactggtgtatattatattcagattagacaggcaacgtcgattcgcatgcaggtccttcaggactatcttaaacgcaaatgcgattgggacaagtctgtacttcagtgcatgaacttcctggaccatctcttgcgccagtatcccagcgagaacatgatctctatcaagcgtaacttctacaacaagaaggacaacccaatgcgtctcgactcctacaccgatgtccgcaagggcacttactccgctttccgtctgtgtgagatgaataacatgagcaagggtagtggcttggcagtcaatgtggatgtggccaacacagcgttctggaacactatgggaacactggccgatacggcacgtgccatgctgagtccgccctcagctcagaacgagaagcaaatggttccgtggcccaagatggctgagatcctgcgacctgtccaggcacgtgacaggaatggaaacatcgtctggcagcagtcagagcctttccagaagctccgtcgcttggcgaagctcaagatcaccgtcaaccaccgtggcaaagaccagagcgataaggtctacaccatcaagcgaatcgcctttgagcagagcatggccaactggggtgccgatgctcagcactacaccttccagcggaagcataaggacggcaaggtggaccctcccatcactattcataattacttcatgcagaagtataaggcccgcctgcagtacccggatcttccactgatcgagacaatgcgtgatggcttctacccaatggaagcctgtcgtcttcaaccattccagcgatatacatacaagctggatccggagcagacatccaagatgatcaagtttgccgtcacccggcccgttcagcgtagtgctgcaatcaacacttgcatgcaaggtcttcactgggaatccgatccctatttcaagcagtatggtctgcagattgcccagcgaatgctcgtcaccccagcccggctgctgcagaacccagaggtccatttctccgggtcgaagattaaccctggcatgactggccgctgggacctccgaggtaaaaagttcctggagtccaatcctgtgcccatccagtcctgggccttcattggcgtcgggtccaatgacggttacaccgttcaggaggatgcgctcaagaactttgcccagacgttcaagcgcgcttatggtcaacatggtggcgtgatccgaaaggacccgttcgtcaaggtgtaccccttcaacgtcccgtaccctcagatgtgcgagcaggcgtacaaggagtgtggtcagcacttcaaggccaccccccaggtcatcttctttgtggtcagcactcgcaactccttggtctatgagcgaatcaagaagaacatggactgccgattctgcaccgttagccaagttatgctggcagatcacgtccgcaaggccaacctccagtactgcggcaacgtggcgatgaaggtcaatgccaagcttggaggtgtcacctgtcgagccgcccctatgggtgtgacttcccccatgccgtactactccgtccccaccatgatcatcggcttggacgtctcccacgctgctcccggtagtggtcgaccctcgatggcagccatgaccgtgtctaccgacaaaaccgctacccgatacgccgcctctgtccaaacaaacggctatcgtggcgagattgtggaaggcatcaatatgcgctttctgcttggccgtctcttgaaatactggatcaacacaaacaagtgtcatcccaagcatgtctacttcttccgagatggagttgcagagggtcagttcggtcaagtcattgacaaggagatcaaggagatcaagcgcatcttccgagacgccggttgtgaggtccctcgtgtcacggtcatgattgccaccaagcgccaccacatccgctttttcccgaacccccaggacaagggctcagctgacaagaatgccaaccctctccctggcacagtggtggagcacgatgccacgcaccccttccactgggacttctacctgtcatcccacgttgccattcaaggtactgcccgacctgtgcactaccaggtaatcttggatgaagcaaactgcaaccctaatgacttgcagcgaatgctgtatcatcactgctaccagtaccagcgatcaacaaccccggtctctctgcatcccgccgtgtactactcgcatttggcatcggtccgtgctgcttcccatgaggacattgcagccagtcagaaggagcttccctctggaaaggctggtttccccttggccaaggcaccctcgactgtctatggatccggaggacaaaaccgcgaggcgcctcctctgcttgccatggagaaccccattgccgacaaggctaacattgcccacatcaacactaccatgtggtacgtctaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]