LOCUS       XM_064972853            1378 bp    mRNA    linear   VRT 03-MAY-2024
DEFINITION  PREDICTED: Oncorhynchus masou masou vimentin-related 2 (vimr2),
            mRNA.
ACCESSION   XM_064972853
VERSION     XM_064972853.1
DBLINK      BioProject: PRJNA1103205
KEYWORDS    RefSeq.
SOURCE      Oncorhynchus masou masou (cherry salmon)
  ORGANISM  Oncorhynchus masou masou
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_088220) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036934945.1-RS_2024_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/24/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1378
                     /organism="Oncorhynchus masou masou"
                     /mol_type="mRNA"
                     /isolate="Uvic2021"
                     /isolation_source="hatchery"
                     /sub_species="masou"
                     /db_xref="taxon:90313"
                     /chromosome="9"
                     /sex="pooled male and female"
                     /tissue_type="Heart, liver, sperm, and fin"
                     /dev_stage="Mature"
                     /geo_loc_name="Japan: Hokkaido"
                     /collection_date="2020-10-09"
                     /collected_by="Takafumi Fujimoto"
     gene            1..1378
                     /gene="vimr2"
                     /note="vimentin-related 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     Proteins"
                     /db_xref="GeneID:135545225"
     CDS             42..1223
                     /gene="vimr2"
                     /codon_start=1
                     /product="alpha-internexin"
                     /protein_id="XP_064828925.1"
                     /db_xref="GeneID:135545225"
                     /translation="

MAMLRVSSYRRQFEEQWSRNGRSGGGCGGQYRSSAVKARGAAAEECTCVQLDFVAAKMLNKESLVRFAKDRSIIAALNDRFVALINMARCFEEDNESLEAQICELEERMTGQQTTTTTIAVPEYSLDAVMERLRKERDQSLFDVEELRRELECLQEQYEETVQQRTLVQLEQEDVGLEVDVVTTDCLALREQVNIYEEQLAHMEAQHETTVQNMVAHVEGPAAAGRGVLEFCNPDIKSALIDIKENYSQLAETIQCECRETGAVVAGAVVAIGAGKELTVARPAGVTGVGQITDVSELKKLIAELEKELAELEKCGEELEDEIEMKREAYVEEIFELECRLEEMRRQQNELQVQMTEQCDDYEELLGQKMAREIEIAAYRGLVEEEDERLCYL"

ORIGIN      

tactgtagccccagcctgcagtacgtgtcccagtatcagccatggccatgctgagagtgtcgtcctaccgccggcagtttgaggagcagtggagtcggaatggacggtcaggcggaggctgtggagggcagtaccgctcctcagcggtcaaggccaggggtgcggctgctgaggagtgtacgtgtgtccagctggactttgtggctgccaagatgctcaataaggagagtctggtccgattcgctaaagaccgcagcatcattgccgccctaaatgatcgctttgtcgccctcatcaacatggcacgctgctttgaggaggacaatgagtctctggaggcccagatctgtgagctggaggagaggatgaccggccaacagaccaccaccactaccatagctgtcccagaatacagcctggacgccgtgatggagagactgcgcaaggagagggaccagagcctgtttgatgtggaggagctgaggagagagctggagtgtctgcaggagcagtatgaggagaccgttcagcagaggaccctcgtccaactggaacaggaagacgttggcctggaagtggatgtagtgaccacagactgtctggccctgagggagcaggtgaacatctatgaggaacaactggctcacatggaggcacagcatgagacgacggttcagaacatggtggcccatgtagagggtccagctgcagcagggagaggtgtcctggagttctgcaaccctgacatcaagtcagccctcatagatattaaggagaactacagccagctggctgagaccatccagtgtgagtgcagggaaactggtgcggttgttgctggtgctgttgttgccattggagctggaaaggagctgacggtggccagacctgcgggggtcacaggcgttggccagataacggacgtcagcgaactgaagaaactgattgcagagcttgaaaaggagcttgcagagctggagaagtgtggtgaggaactggaagatgagattgagatgaagagagaagcatatgtggaggagatctttgagctggagtgtcgtcttgaggagatgcggagacagcagaatgaactgcaggtccagatgacggaacaatgtgatgactacgaggagctgctgggtcagaagatggcccgggaaatcgagatcgctgcctacagaggtttggtggaagaggaggatgagaggctttgctacctatgagaggaaccgatgcagaccagaccaaccaacctgctttcggcgatggatatcctcccatacagatttcatgcgttgccaaaacacaacagacattagagatcacatgaagctaaccgccacacaaccatttgagcagatgtaaaagtatcatgaca

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