2024-04-28 21:50:20, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_058463881 3144 bp mRNA linear PLN 27-JUL-2023 DEFINITION Penicillium antarcticum uncharacterized protein (N7508_005815), partial mRNA. ACCESSION XM_058463881 VERSION XM_058463881.1 DBLINK BioProject: PRJNA973687 BioSample: SAMN30185295 KEYWORDS RefSeq. SOURCE Penicillium antarcticum ORGANISM Penicillium antarcticum Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium. REFERENCE 1 (bases 1 to 3144) AUTHORS Petersen,C., Sorensen,T., Nielsen,M.R., Sondergaard,T.E., Sorensen,J.L., Fitzpatrick,D.A., Frisvad,J.C. and Nielsen,K.L. TITLE Comparative genomic study of the Penicillium genus elucidates a diverse pangenome and 15 lateral gene transfer events JOURNAL IMA Fungus 14 (1), 3 (2023) PUBMED 36726175 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3144) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (27-JUL-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3144) AUTHORS Petersen,C. TITLE Direct Submission JOURNAL Submitted (13-DEC-2022) Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_026695303). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3144 /organism="Penicillium antarcticum" /mol_type="mRNA" /strain="IBT 31339" /culture_collection="IBT:31339" /db_xref="taxon:416450" /chromosome="Unknown" gene <1..>3144 /locus_tag="N7508_005815" /db_xref="GeneID:83191183" CDS 1..3144 /locus_tag="N7508_005815" /note="Argonaute linker 1 domain; Argonaute linker 2 domain; N-terminal domain of argonaute; PAZ domain; Piwi domain" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_058320359.1" /db_xref="GeneID:83191183" /translation="
MSDNPRGRGRGDRGRGDRGRGDRGRGDRGRGRGDLPLRPAGRGDGDRGGFRGDFRGRGDRGRGDFRGRGDFRGRGRGDGGRGRGGRGGVMNHGPPIFRQDEPIPPPSPTVTKTEDNIAKALAINGAKAPRQAKYPERPGYGTVGRPVILYANYLPLSLPNKQLFRYHITIAADAAGRTAPVGKKARQIVCLLLDEHFPQQKSSIASDFRSTLVSGVKLTEGTYDVRYKENLLDDYPEAPRVHQVTVQYTGQVNPVDLLNYLTSTNAGAILDSKSEIVAALNMIMGHHPKTDDSVVSVGANRHYSHRPGIQESYNLGGGLSVLRGFFVSVRAATARVLLNVQVKYIACYDEGPLANVIQSYGGRNTYRLEKFLKSIRVRITHIARKNSRGEARPRIKPIHGLANRGDGGKSPNAPKVARHGAGPAEVEFFLVEAGPKPGTPGATPKPKGKKAPKAGPAEAGRWISVEAFFKKEYNLSLNRDLPVVNVGSREKPVYLPVEVCEVEPGQPAKSKLSGDQTAQMLRFAVMGRKPGQNAHSIVTKGVGVLGLEPQCSTLSAFGISSSTELITVPGRVLPAPSVFYKNGKQTKEVRTMAGSWNMKQIQFSQAKQMKTWTYLYVVSESSRPVFNAPEELETSIRGFRKTLIDMGMAVDVHKRGKRVTLTGRNDAADIENAVLDLQKAYNPVFILGILYAKDTAIYNCIKQVCDVRCGIRNVNVLAEKLRGSNDQYNANVGLKINLKLGGANQSLRTSDLGIISEGKTMLVGIDVTHPSPGSAATAPSVAGIVASVDSTLAQWPAEIRVQGARQEMVADLETLLASRLQHWAKCNKKALPENIIVYRDGVSEGQYNKVIDEELPLLQAACKKTYPATQIAKGLPRLSIVIVGKRHNTRFYPTTEQDSNRENPIPGTVVDRGVSEARDWDFFLQAHSALQGTARPAHYFTVWDEIFYPRHPANSGGPGAADVLQDLTHKMCYMFGRATKAVSVCPPAYYADLVCARARCFLSDLFDPTPVDATGGSVSGATEGTADLARMVDVVIHPNIADTMFYI"
misc_feature 586..852 /locus_tag="N7508_005815" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 892..1044 /locus_tag="N7508_005815" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1048..1506 /locus_tag="N7508_005815" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1186..1188,1285..1287,1393..1395,1405..1407, 1456..1458,1477..1479,1483..1485) /locus_tag="N7508_005815" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1657..3006 /locus_tag="N7508_005815" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2092..2094,2104..2106,2140..2151,2158..2160, 2182..2184,2191..2193,2203..2205,2215..2217) /locus_tag="N7508_005815" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2296..2298,2302..2304,2518..2520,2974..2976) /locus_tag="N7508_005815" /note="active site" /db_xref="CDD:240015" ORIGIN
atgagtgacaaccctagaggtcgtggacgtggtgatcggggacgtggggatcgtggtcgtggtgatcgtggccgcggtgatcgtggccgcggtcgcggtgacttacccttacgccccgctggcagaggagacggagatcgtggaggtttccgcggggactttcgtggccgcggtgacagaggtcgtggtgacttccgtggccgtggagattttcgtggtcgtggcagaggagatggtggacgcggccgtggaggacgcggtggagttatgaaccacggcccgcccatcttcagacaagacgagcctattcctccacctagccccaccgttactaagaccgaggataatatcgccaaagccctcgctatcaacggtgcaaaggcccccaggcaagccaaatatcctgagcgtcctggttacggcactgttggcagaccggtgattctatatgccaactacctacccttaagcctgcctaacaagcagctgttccgttatcatattacgatcgcggctgatgctgcgggccggactgcaccggtgggcaaaaaggcccggcagattgtgtgtctgttgttggacgagcacttcccccagcagaagagcagtatcgcgtctgacttccgttccacgctggtgtcaggtgtcaagctgacggagggcacctacgatgtgcgatacaaggagaatctgctggatgactaccctgaagctccccgcgtgcatcaagtcactgtgcagtacaccggtcaggtcaatccggttgatttgctgaactacttgacttccaccaatgccggtgcgatcctggactccaagtctgagatcgttgctgctcttaacatgatcatgggacaccaccctaagactgacgatagtgttgtctctgtcggagccaacagacactatagtcaccggccaggtatccaggagtcatacaaccttggtggtggtctttccgtcctccgtggattcttcgtcagtgtgcgtgctgccacagctcgcgtcctcttgaacgtgcaggtcaagtacatcgcctgctacgatgaaggacctttagccaatgtgatccaaagctacggcggccgaaacacctaccgtctggaaaagttccttaagagcatccgggtccgtatcacgcacattgcccggaagaacagccgcggtgaagcccgccctcgtattaagcctatccatgggcttgccaaccgcggtgacggtggtaaatcacccaacgcacctaaggttgctcgtcatggtgccggtcctgccgaggtggagttcttccttgtcgaagctggccctaagcctggcactcctggtgctacgcctaagcccaagggaaagaaagcacccaaggctggtcctgctgaagctggacgctggatttccgttgaagcattcttcaagaaggagtacaacctctctctgaatcgagatctacctgtggtcaatgtcggatctcgcgagaagcctgtctatcttcccgttgaagtctgcgaggtcgagcccggtcaaccagccaagtcaaagctgtccggtgatcagactgcccagatgcttcgcttcgccgtgatgggtcgtaaaccaggccagaatgcacactccatcgttactaaaggtgtaggcgttttaggactggagcctcagtgctctaccttgtccgccttcggtatcagctcctctacagagctcatcaccgttcctggtcgcgttctccccgcaccaagcgtcttctacaagaacggcaagcaaaccaaggaagtccgaaccatggctggcagctggaacatgaaacagattcaattctcccaggccaagcaaatgaagacctggacctatctctacgttgtcagcgaaagcagccgcccagtcttcaacgctcctgaggaacttgagacatctattcggggcttccgcaaaaccctcatagatatggggatggcagtcgacgtccacaaacgcggcaagcgcgtaaccctcacaggacgcaacgacgcagccgacatcgaaaacgccgtcctcgatctgcaaaaggcatataacccagtgtttatcctgggaatactctacgcaaaggacacagccatctacaactgcatcaagcaggtctgtgacgtccgatgcggtatccgcaacgtaaacgtactggccgaaaagctccgcggctccaacgaccagtacaacgcgaatgtgggcctgaaaattaaccttaaacttggcggtgcaaaccaaagcctccgcacctccgacctcggcatcatctccgaaggcaaaacaatgctagtcggcatagacgtcacccacccgtccccaggctcggctgccacggcacccagcgtggcgggtatcgtggcctcagtcgactcaacgctagcgcaatggccagccgaaatccgcgtccaaggcgctcgccaggaaatggttgcggacctggaaaccctcctagcatcccgtctccaacactgggccaaatgcaacaagaaggctctccccgagaacatcatcgtctaccgcgacggcgtctcagaaggccaatacaacaaagtcatcgacgaggaactgcccctcctccaagccgcctgcaaaaagacctacccagccacgcaaatagcaaagggcctgccacgcctgtcaatcgtcattgtcggcaaacgccacaacacccggttctacccaacaaccgagcaagactcgaaccgcgagaacccaatcccaggaacagtcgtcgaccgcggcgtctccgaagcccgcgactgggactttttcctacaagcccactccgcgctccaagggacagctcggccagctcactacttcactgtctgggatgagattttctatccgcgtcatcctgccaactcgggtggtcccggtgcggcggatgtgttgcaggatttgacacataagatgtgttatatgtttggacgggcgacgaaggctgtttctgtctgtccaccggcttattatgctgaccttgtctgtgcccgggctaggtgtttcctttcggatctgtttgatcctacgcctgttgatgctactggtgggagtgtcagtggtgctactgaggggacagctgatctggctaggatggttgatgttgtcatccaccctaatattgcagatactatgttttacatttag
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]