GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-04-28 15:01:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_058456510            2949 bp    mRNA    linear   PLN 27-JUL-2023
DEFINITION  Penicillium cinerascens uncharacterized protein (N7498_009454),
            partial mRNA.
ACCESSION   XM_058456510
VERSION     XM_058456510.1
DBLINK      BioProject: PRJNA973687
            BioSample: SAMN30185320
KEYWORDS    RefSeq.
SOURCE      Penicillium cinerascens
  ORGANISM  Penicillium cinerascens
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae;
            Penicillium.
REFERENCE   1  (bases 1 to 2949)
  AUTHORS   Petersen,C., Sorensen,T., Nielsen,M.R., Sondergaard,T.E.,
            Sorensen,J.L., Fitzpatrick,D.A., Frisvad,J.C. and Nielsen,K.L.
  TITLE     Comparative genomic study of the Penicillium genus elucidates a
            diverse pangenome and 15 lateral gene transfer events
  JOURNAL   IMA Fungus 14 (1), 3 (2023)
   PUBMED   36726175
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2949)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JUL-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2949)
  AUTHORS   Petersen,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-DEC-2022) Department of Chemistry and Bioscience,
            Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland
            9220, Denmark
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_026695298).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..2949
                     /organism="Penicillium cinerascens"
                     /mol_type="mRNA"
                     /strain="IBT 15544"
                     /culture_collection="IBT:15544"
                     /db_xref="taxon:70096"
                     /chromosome="Unknown"
     gene            <1..>2949
                     /locus_tag="N7498_009454"
                     /db_xref="GeneID:83183811"
     CDS             1..2949
                     /locus_tag="N7498_009454"
                     /note="Argonaute linker 1 domain; Argonaute linker 2
                     domain; Mid domain of argonaute; PAZ domain; Piwi domain"
                     /codon_start=1
                     /product="uncharacterized protein"
                     /protein_id="XP_058303409.1"
                     /db_xref="GeneID:83183811"
                     /translation="
MSGNRGGRNLPIHGGRSDGGGNRGRGGDRGGDRGGDRGGRGQGGSRGPSSGGGFNQGGGGRGPSVPKEPDVDPIILYKYEPKVNREITKFEDKCIAQNRGQRAKTGQLALRPEYGSNGTEIIVRANFFEAMFKSPKWMSHRVKIIPEPQNVRLRREVFIELMGKREVREAHAATDGAQEIVAMKDLTVHSPMTVTVDANLRGAKDFDVVLSRGELGEPSQLLTSLDSTSLREQTPAELSTIRLMNILMSAHPFRDAGVATIKSANGTKVFWTDTRKQACYLGGGIECIRGFNSSVRVCDNRILVNLGINHSSFFLQGPLQIIFLKFREVHRDDIVLLNRYINRLRVNVTHLCKRMENGVEVYRQRSIWGLAYPNRDGYDPKTKFKQATDPNPPVVPRLGASADEVKFFKYNQDSEGKRLQTGKYISVTDYFKAEYKMDLKYHDWPVVNIGSFVRPIYLPLDVCIVPHGQRFMGELALIQRQNIIAFSCRKPPANYQSITQDGLKIMGMNNQTDELGMRFLKEMIAVPGRLLSAPTLKYGKGRTLVPKFGSWNLKGQQFYTPVTINRWAAYVFHKHNQKPRDGEHVRAFEALAKQGREQGMRWPSLSREPELVEVEDRPKDWIEQINGIFKTLQRAQVDIVVISLPPGVDRIFDHIKYISETKAGVLTHCCLASKFFKADQQYMANNTMKVNLKLGGVNQTLSAAPRLIMSRNTMVVGLDVTHPSPTDPDNFPSMATIVASTDSPMGQWPGEVRVQERRKEEVEHLKSMMLGRLHRWKNENKVFPANILIYRDGVSEVQFKMVLDKELKLVKDAVQAVYPDKQPNVTIVVAGKRHNVRFYQTKPGDADRTDGPKNGLVVDRGVTRSIYWDFYLQAQTPLQGSARPAHYIVIWDEIFSASNADPKPADSLQELTHSICYMMGRCTRSISYATPAFLADKFCDRARRYMRAYFYRCQETREPLELNRPDHIVKLLGSAQEKMAYI"
     misc_feature    <844..942
                     /locus_tag="N7498_009454"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    <1264..1395
                     /locus_tag="N7498_009454"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    1537..2838
                     /locus_tag="N7498_009454"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1954..1956,1966..1968,2002..2013,2020..2022,
                     2044..2046,2053..2055,2065..2067,2077..2079)
                     /locus_tag="N7498_009454"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2155..2157,2161..2163,2374..2376,2806..2808)
                     /locus_tag="N7498_009454"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
atgtctggcaatcgcggaggccgaaacctccccatccatggtggccgttccgatggaggcggcaaccgaggccgcggtggtgatcgcggtggtgatcgcggcggagaccgaggcggccgtggacaaggtggttctcgaggcccttcatctggtggtggcttcaaccaaggcggtggtggacgtggtcccagtgtcccaaaagagccggacgttgacccgatcatcctttacaagtatgaaccgaaggtcaacagggaaatcaccaagttcgaagacaaatgtattgcccagaacagaggtcagcgggccaagacgggacaactcgctcttcgccctgagtatggcagcaacggaacagaaatcatcgtgcgcgccaacttctttgaggccatgttcaaatcaccgaagtggatgtcccacagagtgaagattattccagaaccgcagaatgttcgtctccgtcgggaagttttcatagaactcatgggtaagcgggaggtcagagaggctcacgccgccactgatggcgcccaggaaatcgttgccatgaaagacttaacagttcacagtccaatgacagttaccgtcgacgcaaacttgagaggtgcaaaagacttcgacgtcgtgctgagccgaggcgaactgggtgaaccctcgcaactgttgacgagccttgacagtacctcccttcgagagcaaaccccagcagagctgagcaccattcgacttatgaacattctcatgagtgctcatccgttcagagacgcaggcgttgcgaccatcaagagcgccaatggcaccaaggttttctggaccgacaccagaaagcaagcgtgctatctcgggggcggcatcgagtgtattcgtggcttcaactccagcgtgagagtatgcgacaatcgcatcctggttaacttgggcatcaatcacagctcgttcttcctgcaaggtcccttgcaaattattttcctcaagttcagggaggttcatagagatgatatcgtcctgctgaatcgatacatcaatcggcttcgcgttaacgtaactcatctttgcaagcgtatggaaaacggggtagaggtttatcggcagaggagcatttggggccttgcctatcctaaccgtgacggatatgacccgaagaccaagttcaagcaggccaccgacccaaatccccccgtagtaccacgtctgggagccagcgcggacgaagtcaaattcttcaagtacaaccaggatagcgaagggaaaaggcttcaaactggaaagtacatcagcgtcaccgactacttcaaagcggaatacaaaatggaccttaagtatcatgactggcctgtggtgaatattggcagttttgtgcgaccgatctaccttcctttggatgtctgcattgttccacatggacagcgcttcatgggtgagttggcgttaatccaacgccagaatatcattgcgttcagctgccgcaagccgcccgcgaactaccagtccatcacgcaggacggtctgaagatcatgggaatgaataatcaaacagacgaacttggaatgcgattcttaaaggaaatgatcgctgtgcctggacgccttctctcggctcccactctgaaatatggaaaagggaggacgctggttcccaagttcggctcttggaacctcaagggccagcaattctacacgcctgtcaccatcaatcgttgggccgcttacgtttttcacaaacacaatcagaagccacgagatggggaacacgtccgcgcgtttgaggctctcgccaaacaaggaagggaacagggcatgaggtggccttctttgtcgcgtgaacccgagttggtcgaggttgaggacagacccaaggattggattgaacaaatcaatggcatattcaagactctccagagggcacaggtcgacattgtggttatctcgcttcctcccggcgtggatcgcatcttcgaccacatcaaatacatcagtgagaccaaggccggcgtcttgactcactgctgtctcgccagcaagtttttcaaagccgaccagcagtacatggcaaacaacaccatgaaggtcaacttgaagcttggtggtgtcaaccagacgctcagcgccgctcctcgcctgattatgtcaagaaataccatggtcgttggtctcgatgtgactcacccatctcctactgacccggacaatttccccagtatggcaacaattgtggctagtacagattcaccaatgggacaatggccgggcgaggtcagggtgcaggagcgccgcaaggaggaagttgagcatctaaagagcatgatgctgggccgcctgcacagatggaagaacgagaacaaagtattccctgcaaatattctgatctatcgcgatggtgtcagcgaagttcagttcaaaatggtcttggacaaagaactcaagctcgtcaaagatgcagtccaggccgtataccctgataaacagccgaatgtcaccatcgtcgtggctggcaaacgacacaacgtgcgcttctaccaaaccaagcccggggatgcagacagaaccgatggcccaaagaatggcttggtcgtcgaccggggcgtcactcgctctatctattgggacttctacttgcaggcacaaacaccactccagggttcagcccgtccagcgcattacatcgtcatctgggacgagatctttagcgcctcgaatgctgaccccaagccggctgactccctccaggaactgacccatagtatctgctacatgatgggtcgttgcacacgctcaatcagttatgccacccctgccttcctcgcagacaagttctgtgaccgggcccggagatacatgcgagcatacttctacagatgccaggaaaccagagagccactcgagttgaataggcccgaccacatagtcaagttgcttggtagtgcacaggagaaaatggcctacatctga
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]