2024-04-28 13:23:06, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_057171319 3276 bp mRNA linear PLN 12-JUN-2023 DEFINITION Penicillium paradoxum uncharacterized protein (N7457_000251), partial mRNA. ACCESSION XM_057171319 VERSION XM_057171319.1 DBLINK BioProject: PRJNA973687 BioSample: SAMN30185361 KEYWORDS RefSeq. SOURCE Penicillium paradoxum ORGANISM Penicillium paradoxum Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium. REFERENCE 1 (bases 1 to 3276) AUTHORS Petersen,C., Sorensen,T., Nielsen,M.R., Sondergaard,T.E., Sorensen,J.L., Fitzpatrick,D.A., Frisvad,J.C. and Nielsen,K.L. TITLE Comparative genomic study of the Penicillium genus elucidates a diverse pangenome and 15 lateral gene transfer events JOURNAL IMA Fungus 14 (1), 3 (2023) PUBMED 36726175 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3276) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (09-JUN-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3276) AUTHORS Petersen,C. TITLE Direct Submission JOURNAL Submitted (12-JAN-2023) Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_026643180). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3276 /organism="Penicillium paradoxum" /mol_type="mRNA" /strain="IBT 22861" /culture_collection="IBT:22861" /db_xref="taxon:176176" /chromosome="Unknown" gene <1..>3276 /locus_tag="N7457_000251" /db_xref="GeneID:81823092" CDS 1..3276 /locus_tag="N7457_000251" /note="Argonaute linker 1 domain; Argonaute linker 2 domain; Mid domain of argonaute; N-terminal domain of argonaute; PAZ domain; Piwi domain" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_057035222.1" /db_xref="GeneID:81823092" /translation="
MAPPKPVRPLANEEDEPKARSGHRSTGSSKPTSTTGSKTPSKPPHSSSSSRRPNLTVELPLRNAPPAKPLDPRQVRELREHKAQLEEDARRKKEAESTAWMRRARYDPETGEKEKPSSTGSSSSDSPIRRVETPPELPPHWTEEEKVNYERLAREGVKVAVFEQHRLDKDKIIKHQDYVTVAWDGCKNIDIPWHRFKVRASSGTQEETQIQRRVGYNTAGKEIEVMMNAYPITSFPDKAVYQYEINVLHGDQNETDRRVLRKCWNSETRKAHLPDGIWDGGRICWSLRKFDDWNEAIDIKSDLTRDIRTLATVEEFKRNPTFRMSVILKRRINLSVINAWLQSRHELDELVIESLSFLDHLLREWPTKQFAAIKRAFFFDKLGDDEELKQEFYQPLANMGASVYRGIYQAIKPTPRGLILNVDVAHCVFFSRISLMGYMMNVNGWNDKSTLVRNLQSTRDKFGGVKESKWFAQVSKKIQGLRVAPNYEGCPFKMKSFIIKGLIHARPKEFFIDYHDKATGVSTRMNLEEYFMKRYNIRLEYPNMVLVEMQKQDVHYPAEFLVIKGLQRYRYKLTDMQAAQMIQWCATRPPKRLANARQAKELLQHKNDPILKLYGLNISEQMIKTKARLLPSPEIQFGGNTKHNPRHSGSWDLRGKKFYKPNEKALQAWGVGFFAGHRKSINHDQTLMWVDQFVKIYKAMGGEVTARPVVKALSEDVGTSVKKLYDAIATHNKQEPQLMVFIVPDKDSWVYLRIKKSSDCRYGTPSQVLQSAHCISNRPQYHANVLMKVNAKLGGVTARAVPKSKSSGLRPGSMIIGADVTHPMMGVWTPSLAAMSVSANSTATRYMGGCETNGDRIEIIRDKVVEFILRPMVAEWKATVGNGKAPEYVYYFRDGVSASEYQRILSEEVPSIRFAIAHACGQPVWSGKMCVVVANKRHHLRAFPDPKNRATSDSNGGPLPGTLIDRDVTSPHDWDFLLYTHIALQGTPRPVHYHVLLDEIGLKPNDLEGMINDHCYQYIRSTTSVSVHPAIYYAHLISVRARHHEDVPITSGPQSGPEVKMTNPKPKEPRAKRLLPIEGTSNRLALGMWYV"
misc_feature 835..1086 /locus_tag="N7457_000251" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1114..1290 /locus_tag="N7457_000251" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature <1420..1689 /locus_tag="N7457_000251" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1489..1491,1528..1530,1579..1581,1591..1593, 1645..1647,1666..1668) /locus_tag="N7457_000251" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1825..3135 /locus_tag="N7457_000251" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2251..2253,2263..2265,2299..2310,2317..2319, 2341..2343,2350..2352,2362..2364,2374..2376) /locus_tag="N7457_000251" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2455..2457,2461..2463,2680..2682,3103..3105) /locus_tag="N7457_000251" /note="active site" /db_xref="CDD:240015" ORIGIN
atggcacctccaaagccagtgagaccattggccaacgaggaggatgagcccaaggctcgctctggccatcgatcgactggctcttcaaagcctacttcgactactggttctaagacaccttcgaagccccctcactcttcttcatcttctcgtcggcccaacctcaccgttgagcttcctctacgtaatgcacccccagcaaagcctctcgatccccgccaagtccgcgaattgcgggagcacaaagctcaattggaggaagatgcgaggcgcaaaaaggaagcagaaagtaccgcttggatgcgccgagcacgttatgacccggagactggtgagaaggaaaagccgagcagcactggctctagcagcagtgactcccctatccgtcgagttgagacccccccagagctcccaccccactggacagaagaagaaaaagtcaactacgaacgcctcgcgagagaaggcgtgaaggtggctgtcttcgagcaacacagactcgacaaagacaagattatcaagcaccaggattatgttaccgttgcctgggatggttgtaagaacatcgacattccctggcatcgattcaaagttagggcgtcttctggtacccaggaagagactcagatccagcgtcgtgtcggctacaatactgctggcaaagaaatcgaggtcatgatgaatgcgtaccctatcacttctttcccggataaggctgtctaccagtacgagatcaatgttcttcatggcgatcaaaacgaaaccgatcgacgtgtccttagaaagtgctggaacagtgaaacccgaaaggcacacctccctgatggtatctgggatggcggacgaatctgctggtctctcagaaaattcgatgactggaatgaagctattgatatcaagagtgacttaactcgagacatcaggactcttgccaccgttgaggagtttaagagaaacccaactttccggatgtccgtcatcctgaagagaagaatcaatctttccgtgatcaatgcttggctgcaaagccgtcatgagctggatgaacttgtcattgaatctctcagcttccttgaccatttgctccgtgaatggccgaccaaacagtttgctgcgatcaagcgagccttcttttttgacaagcttggagatgacgaggagttaaagcaggagttttaccaaccgcttgctaacatgggtgcttccgtttaccgaggcatttatcaagccattaaaccgactcctcgaggtctgatcctcaatgttgatgtcgcccactgcgtcttcttttctcgtatcagccttatgggctacatgatgaatgtgaacggatggaacgataaatctacacttgtgaggaacctccagtctacacgcgataaatttggaggcgtcaaggaatcaaagtggtttgctcaagtgagcaagaaaattcaaggtcttcgagtggcaccaaactacgagggctgtccgttcaagatgaagagtttcatcatcaaaggactcattcatgcaaggcccaaggaattctttatcgattaccacgacaaggctactggggtttcaactcggatgaacctcgaagagtactttatgaaacgatacaatatccgtcttgaatatcctaacatggttctggtcgagatgcaaaagcaagatgttcactaccctgccgagtttctggtcatcaagggtcttcagagataccgttacaaacttactgatatgcaggcggcacagatgattcagtggtgcgcaaccagacccccgaagcgtttggccaatgcacgccaggcgaaggaacttctgcagcacaagaatgatcctatcctgaagctttatggcttgaacatcagtgaacaaatgatcaagaccaaagcccgcctccttccgagccccgaaattcagtttggcggcaacaccaagcacaacccccggcactcgggaagttgggatctccgcggtaagaagttctacaagcccaacgaaaaggcccttcaggcatggggtgtcggattctttgctggccatcgcaaatcaattaaccatgaccagacgctcatgtgggttgatcaattcgtgaagatatacaaagccatgggtggtgaggtcacggcccggcccgtggtgaaggcattgagcgaggatgttggcaccagtgtcaagaaactgtacgatgccatcgcaactcataacaaacaagagccccagcttatggtattcatcgttcctgacaaggattcctgggtgtatcttcgcatcaagaaatcttccgactgccgatacggtaccccatcgcaggtacttcaatccgcacactgcatctctaataggccccaataccacgcaaatgttctcatgaaggtcaatgcgaagctcggcggagtcactgcccgagctgttcccaagtcgaagagctcaggtctgcgtccaggatccatgattattggtgcagatgtcactcatccgatgatgggtgtgtggaccccgtcactggcagccatgtcagtctcggcgaactcaactgcaactcgctacatgggtggatgcgagaccaatggcgatcggatcgaaatcattcgcgataaagttgtggaattcattcttcgccctatggtcgccgaatggaaagcaaccgttggaaatggcaaagcccccgaatatgtttactatttccgtgacggtgtctctgcttccgaataccagaggatcctatctgaggaggtcccatccattcgcttcgccattgctcatgcatgtggtcagccggtctggagtggtaagatgtgcgttgtggttgccaacaagcgccatcaccttcgagcattccccgaccccaagaaccgcgccacctccgactctaatggcggtcccctgccaggcactctcattgatcgcgacgtgactagtccacatgattgggatttcctgctctacacccacatcgccctacagggaacccctcgtccggtccattatcatgtcttgctggatgaaattggcctcaagcccaacgaccttgagggcatgatcaacgatcattgttaccagtacatccgttcaaccacatctgtttctgttcaccctgcaatctactacgcccacttaatttctgttcgtgctcgtcaccatgaggatgtgcctattacttctggtccccagagcggtccagaagtgaagatgacaaaccctaagcccaaggagccccgagctaagagattgcttcctattgaaggcacttctaacagattggctttgggaatgtggtatgtctaa
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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