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2024-04-28 00:46:34, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_057126264            3132 bp    mRNA    linear   PLN 09-JUN-2023
DEFINITION  Penicillium nucicola uncharacterized protein (N7511_003839),
            partial mRNA.
ACCESSION   XM_057126264
VERSION     XM_057126264.1
DBLINK      BioProject: PRJNA973687
            BioSample: SAMN30185359
KEYWORDS    RefSeq.
SOURCE      Penicillium nucicola
  ORGANISM  Penicillium nucicola
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae;
            Penicillium.
REFERENCE   1  (bases 1 to 3132)
  AUTHORS   Petersen,C., Sorensen,T., Nielsen,M.R., Sondergaard,T.E.,
            Sorensen,J.L., Fitzpatrick,D.A., Frisvad,J.C. and Nielsen,K.L.
  TITLE     Comparative genomic study of the Penicillium genus elucidates a
            diverse pangenome and 15 lateral gene transfer events
  JOURNAL   IMA Fungus 14 (1), 3 (2023)
   PUBMED   36726175
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3132)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUN-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3132)
  AUTHORS   Petersen,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JAN-2023) Department of Chemistry and Bioscience,
            Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland
            9220, Denmark
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_026643127).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..3132
                     /organism="Penicillium nucicola"
                     /mol_type="mRNA"
                     /strain="IBT 29836"
                     /culture_collection="IBT:29836"
                     /db_xref="taxon:1850975"
                     /chromosome="Unknown"
     gene            <1..>3132
                     /locus_tag="N7511_003839"
                     /db_xref="GeneID:81778026"
     CDS             1..3132
                     /locus_tag="N7511_003839"
                     /note="Argonaute linker 1 domain; Argonaute linker 2
                     domain; N-terminal domain of argonaute; PAZ domain; Piwi
                     domain"
                     /codon_start=1
                     /product="uncharacterized protein"
                     /protein_id="XP_056985154.1"
                     /db_xref="GeneID:81778026"
                     /translation="
MSDNPRGRGCGDRGRGRGDSDRGRGDGDRGGGSRGDSRGDFRGRGGDRGRGEFRGGGDRGRGDFRGRGDSRGRGRGDGGRGRGRGGGVNQGPPIFRQGEPIPQPSPVVTKTENDIAKALAISGSKAHRQAKYPERPGYGTVGRPVTLYANYLPLSLPNKQLYRYHITIAADTAGRTAPVGKKARQIVCLLLEEHFAQQKRSIASDFRSTLVSYVKLREGTYDVRYKENLLDDYLETPRVHQVTVQHTGQVNPADLLNYLTSTNAGAILDSKSEIVAALNMIIGHHPKTDDSVVSVGANRHYSHRQGVQESYSLGGGLSALRGFFVSVRAATARVLLNVQVKYIACYDEGPLTNMIQSYGGRNTYRLEKFLKGVRVCITHITRKNSRGESRPRIKAIHGLANRGDGGKSPNAPRVPRHGAGPAEVEFFLSEVGPKSGPSGATPKPKGKKAPKAGPVEAGRWITVEAFFKKEYNLSLNRGLPVVNVGSREKPVYVPVEVCEVAAGQPAKSKLSGDQTAQMLRFAVMGRKPGQNAYSIVTKGVKVLGLEPQNSTLSAFGLSSSTELITVSGRVLPAPSVFYKNGKKTTEVRTMAGSWNMKQIQFSQAKQLKSWTYLYIAHENARPVFNDPEELYASLRGFRKTLTDMGMAADAHKVGKRVILTGHRDADAIENAVLDLQKEHNPVFILGILYAKDTGVYNCMKQVCDVRCGIRNVNVLAEKLRGSNDQYNANVGLKINLKLGGANQSLRSADLGIISEGKTMLVGIDVTHPSPGSAATAPSVAGIVASVDSTLAQWPAEIRVQGARQEMVADLETLLASRLQHWAKCNEEALPENIIVYRDGVSEGQYNKVIDEELPLLQAACKKTYPATQTAKGLPRLSIVIVGKRHNTRFYPTTEQDSNRENPMPGTVVDRGVSEARDWDFFLQAHSALQGTARPAHYFTVWDEIFYPRHPANSSGPGAADVLQDLTHKMCYMFGRATKAVSVCPPAYYADLVCTRARCFLSDLFDPAETSGGSLSGVTEGAADVARTVDVVIHPNVADTMFYI"
     misc_feature    580..846
                     /locus_tag="N7511_003839"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    886..1038
                     /locus_tag="N7511_003839"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    1042..1503
                     /locus_tag="N7511_003839"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1180..1182,1276..1278,1387..1389,1399..1401,
                     1450..1452,1471..1473,1477..1479)
                     /locus_tag="N7511_003839"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1651..3000
                     /locus_tag="N7511_003839"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2086..2088,2098..2100,2134..2145,2152..2154,
                     2176..2178,2185..2187,2197..2199,2209..2211)
                     /locus_tag="N7511_003839"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2290..2292,2296..2298,2512..2514,2968..2970)
                     /locus_tag="N7511_003839"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
atgagtgacaacccaagaggtcgtggctgtggtgatcgtggccgtggtcgtggtgatagtgatcgtggtcgtggtgatggagatcgtggaggtggttcccgcggggactctcgtggcgacttccgtggccgtggtggtgacagaggtcgtggtgaattccggggtggtggtgatagaggtcgaggtgacttccggggccgtggagattctcgaggtcgtggcagaggagatggtggacgcggccgtggacgcggtggaggtgtgaaccaaggcccgcccattttcagacaaggcgagccgattccacagcctagccccgtcgttaccaagaccgaaaacgatatcgccaaagccctcgccatcagcggctcaaaggctcacaggcaagccaagtatcccgagcgtcctgggtatggcactgtgggcagaccggtgaccttgtatgccaattatctgcccttgtccttgcctaacaaacaactataccgctatcatattacgatcgcggccgacactgcgggtcggactgccccagtgggcaaaaaggcccggcagattgtgtgtttgctgttggaagagcactttgcacagcagaagagaagtatcgcgtctgacttccgttcgacactggtgtcctatgttaaactgagagagggtacctatgacgtgcgatataaggagaacctactggatgactatcttgaaactccccgggtacatcaagtcactgtccagcacaccggtcaggtcaatccggctgatttactgaattacttgacttccaccaatgctggtgcgatcttggactctaagtctgagattgtcgctgctctaaacatgattataggacaccaccctaagactgacgatagtgtcgtctcagttggagctaacagacactatagtcaccgtcaaggtgtacaggagtcttacagcctcggtggtggtctttcggctctccgtggattcttcgtcagtgtacgtgctgccacagctcgcgtcctcttgaacgtacaggtcaagtacatcgcctgctacgatgaaggacctttgaccaatatgattcaaagctacggcggccggaacacctatcgtctcgaaaagttcctcaagggtgtccgagtctgcatcacacatatcactcggaagaacagccgcggtgaatcccgtcctcgcatcaaggctatccatggacttgccaaccgcggtgacggtggtaagtcacctaacgcacctagggtccctcgtcatggtgccggtcccgccgaggtggagttcttcctttccgaagttggccctaagtctggcccttctggtgctacgcctaagcccaagggaaagaaagcccctaaggccggtcctgtggaagctggacgctggatcactgtggaagccttcttcaaaaaggagtacaacctctctttgaatcgaggtctgccagtggtcaatgtcggatctcgggagaagcctgtctatgttcccgttgaggtctgcgaggtcgctgctggtcagccagccaagtcgaagctctctggtgaccagactgcccagatgctccgcttcgccgtgatgggccgtaaaccaggccagaatgcctactccatcgttactaaaggtgttaaagtgctaggactggagcctcagaattccaccttgtctgccttcggtctcagctcctctacagagctcatcaccgtttccggtcgtgtccttccagcaccaagcgtcttctacaagaacggtaagaagaccacagaggttcgaaccatggctggcagctggaacatgaagcaaattcaattctcccaggccaagcaactaaagtcgtggacctatctctatatcgcgcacgaaaacgcccgcccagtcttcaatgaccccgaggaactttatgcgtctcttcggggcttccgtaaaaccctcacagacatgggcatggcagcggacgctcacaaagtcggcaagcgcgtaatcctcacaggacacagagacgcagacgcaatcgaaaacgccgttctcgatctgcaaaaagaacataacccagtattcattctaggaatactctacgcaaaggacacaggcgtttacaactgcatgaagcaggtctgtgacgtccgatgcggcattcgcaacgtaaacgtactggccgaaaagctccgcggctccaacgaccagtacaacgcgaacgtgggcctgaaaattaacctaaagctcggaggagcaaaccaaagccttcggagcgccgacctcggcattatctccgagggcaaaacaatgctagtcggaatcgacgtcactcacccatccccagggtcagcagccacagcacccagcgtggcaggcatcgtggcctcggtcgattcaacgctagcgcaatggccagccgaaatccgcgtccaaggcgcccgccaggaaatggtcgcggatctcgagaccctcctagcatcccgcctacaacactgggccaaatgcaatgaggaggccctaccagagaacatcatcgtttaccgcgacggcgtctccgaaggccaatataacaaggtcatcgacgaggagcttcccctcctccaagccgcctgcaagaagacctacccagcaacacaaactgccaagggcctgccacgcctatcaattgtcatcgtcggcaagcgccataacacccgcttctacccaacaacagagcaagactccaaccgcgagaatcccatgccaggaactgtcgtcgaccgcggcgtctccgaagcccgtgactgggacttcttcctccaagcccattccgcgctccagggaaccgctcggccggctcactatttcaccgtctgggatgagatcttctacccgcgtcaccctgcgaactcgagtgggcctggtgcggcggacgtgttgcaggatctgacacataagatgtgctatatgtttggccgggctacgaaggcggtttctgtttgtcccccggcttattatgctgatcttgtctgtacccgggctaggtgtttcctttcggatctctttgatcccgctgagacgtcgggtggaagtttgagcggtgttactgagggtgcggcggatgtggccaggactgttgatgttgttattcatcctaatgttgcggatactatgttttacatttag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]