GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-04-28 03:23:47, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_056937550            2253 bp    mRNA    linear   PLN 06-JUN-2023
DEFINITION  Penicillium diatomitis uncharacterized protein (N7539_007949),
            partial mRNA.
ACCESSION   XM_056937550
VERSION     XM_056937550.1
DBLINK      BioProject: PRJNA973687
            BioSample: SAMN30185328
KEYWORDS    RefSeq.
SOURCE      Penicillium diatomitis
  ORGANISM  Penicillium diatomitis
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae;
            Penicillium.
REFERENCE   1  (bases 1 to 2253)
  AUTHORS   Petersen,C., Sorensen,T., Nielsen,M.R., Sondergaard,T.E.,
            Sorensen,J.L., Fitzpatrick,D.A., Frisvad,J.C. and Nielsen,K.L.
  TITLE     Comparative genomic study of the Penicillium genus elucidates a
            diverse pangenome and 15 lateral gene transfer events
  JOURNAL   IMA Fungus 14 (1), 3 (2023)
   PUBMED   36726175
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2253)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUN-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2253)
  AUTHORS   Petersen,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2022) Department of Chemistry and Bioscience,
            Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland
            9220, Denmark
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_026623183).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..2253
                     /organism="Penicillium diatomitis"
                     /mol_type="mRNA"
                     /strain="IBT 30728"
                     /culture_collection="IBT:30728"
                     /db_xref="taxon:2819901"
                     /chromosome="Unknown"
     gene            <1..>2253
                     /locus_tag="N7539_007949"
                     /db_xref="GeneID:81627799"
     CDS             1..2253
                     /locus_tag="N7539_007949"
                     /note="Argonaute linker 1 domain; N-terminal domain of
                     argonaute; PAZ domain"
                     /codon_start=1
                     /product="uncharacterized protein"
                     /protein_id="XP_056787415.1"
                     /db_xref="GeneID:81627799"
                     /translation="
MNSILNSTLEPSLRGGKDCEKWLIEFRTTSAYHGIGDAIPVTEGPNIISRGAHAGRPCDIVDTISSSIRKARFVNVHEKSYRWPIGPWPKDKQLKEAGMVNFQHWVAGMEGWCMWLLTKFGEQEPWTKEEVHVCVAQLRRELQNPYHHVWHRVPASVILTSCQINPAAAAVAVEDLVAESLGTAVVAEDVAEAGEIHRATPFALLIVGAEVISVEPSAVAGVVVIIAAVETSGVAAEVVVLRALESLSEYYCFHGLFPMICLCISRTITLTSKSRSEGKPITPPDATVVKTEDAVAKALVASRQKNAKNATQAYPDRPGYGTLGRPVTLYANYLPFTSVGKLIFRYHVSIAAEGGREPGGRKARHIVRLLLEEHYCANLNSIATDYRSTLISVTKVAEGQFDVRYKDENDEEYPENPKVYKVTIQHTGDINPADLINYLTSTNAGSMLSSMPEIVQALNVILGHHPKSERSVASIGGNRHFSLQEGLKESSSLEGGLEVLRGFFVSVRAATARVLLNVQVKYLACYKSGPLEYVIQEWKASNFRASSYRMEAFLKRMRVCITHIKHKGKNGKERPARIKTISGLATPQDGSSAPNGPKVEGYGAGPYSVKFFLNAPGSQSARPSGGEGKGKKGKKGPPKAGPLPAGQYISVADFFRKEYNITVNPDFPVVNVGTRDKPVYLPVEVCEVEAGQPVKNKLSPKQTQNMLNFAVKGRMPAKNAQSIITKGVGVLGIGQPLNATLVSEPLPRLH"
     misc_feature    1147..1386
                     /locus_tag="N7539_007949"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    1426..1581
                     /locus_tag="N7539_007949"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    <1639..2064
                     /locus_tag="N7539_007949"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1735..1737,1831..1833,1951..1953,1963..1965,
                     2014..2016,2035..2037,2041..2043)
                     /locus_tag="N7539_007949"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
ORIGIN      
atgaactccatcttgaacagtactctagagccgagtcttaggggcgggaaggattgtgagaagtggttgatcgagttcagaacaacgagcgcttaccacggcatcggggatgctattccagtcaccgaaggtccaaacataatttcgcgtggagcccacgctggccggccgtgtgacatcgtcgataccatttctagcagcatccgaaaagctcgttttgtcaatgtgcatgaaaagagttacaggtggccgatcggaccatggcccaaagacaaacagttaaaggaggctggcatggtcaatttccaacactgggtagccggtatggagggatggtgtatgtggctccttacgaagtttggcgagcaagagccgtggacaaaagaggaagtccacgtgtgtgtagctcagctgcgcagggagctccaaaatccctatcaccatgtttggcacagggttccagcttccgtcatcttgacgtcatgtcagatcaaccccgcggccgcggcggtcgcggtcgaggacctcgtggcggagtctttggggaccgcggtggtcgcagaggacgtggccgaggccggggagattcacagggccacccctttcgcccttctgatcgtgggggccgaggtgatttccgtggagccttccgcggtggccggggtggtggtgatcatcgcggccgtggagacttccggggtcgcggccgaggtggtggtcctcagggccctcgaatctttaagtgagtattactgctttcatggcctctttccaatgatctgtctttgtatttcacgaacaatcactctaacctcaaaatcccgcagtgagggcaaacctattactccgcccgatgccaccgtcgtcaagacagaagacgctgtggctaaggcgctcgttgccagtcgccagaaaaatgcaaagaacgctacgcaggcatatcccgaccggccaggatacggtactctcggtcggcctgttacgctatatgccaactatctgccctttacctctgtgggaaaactaatctttcgctatcatgtctccatcgccgcagagggcggccgggagcctggtggcagaaaagcacgacacatcgtgcgtcttctgctggaggagcactattgtgccaacttgaacagcattgcaaccgactatcgctcaacacttatctcagtgactaaggttgctgaaggccagttcgatgtgcgctacaaggatgaaaacgatgaagaatatcctgagaacccgaaggtgtacaaggtcaccatccaacacacgggtgacattaacccagccgaccttatcaactacctcacttccaccaatgcagggagcatgctgagctccatgcccgagattgttcaggctctgaatgtcattctgggtcatcatccgaagagcgagcgctcggtagcctccatcggcggaaacagacatttcagccttcaagaaggactcaaggagagttccagtctcgagggtggtctagaggtgcttcgcggcttctttgttagtgtgcgagctgccacagcccgtgtcctgctgaatgtccaggtcaagtacttggcctgctacaaatcagggcccttagaatatgtgattcaagagtggaaggctagcaattttagggccagttcctacaggatggaggcttttctgaagcgcatgcgtgtttgcatcactcacatcaagcacaagggcaaaaatggcaaagaaagacccgctcgcatcaagaccatatccggtctggcaactccccaagatggtagctcagcacccaacgggccaaaggtggagggctacggagctggtccctacagtgtgaagttcttcctgaatgctcctggctcacagtctgcacggcctagtggtggagaaggcaagggcaagaagggcaagaagggccctcccaaagctggccctcttccagctggccagtacattagcgttgctgatttcttcaggaaagagtacaacatcactgtgaatcccgacttccctgttgttaacgtcggaacccgtgacaaacccgtctacctccctgtggaggtttgcgaggtcgaggctggccaacctgtgaaaaacaagctctcccctaaacagacacaaaatatgctcaactttgctgtcaaaggccgcatgccagcaaaaaatgctcagtctattatcacgaaaggtgtgggggtattgggaatcggtcagccactgaatgccacactcgtaagtgaaccactgccccgactgcactga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]