2024-04-28 05:32:28, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_056935872 2625 bp mRNA linear PLN 06-JUN-2023 DEFINITION Penicillium diatomitis uncharacterized protein (N7539_006270), partial mRNA. ACCESSION XM_056935872 VERSION XM_056935872.1 DBLINK BioProject: PRJNA973687 BioSample: SAMN30185328 KEYWORDS RefSeq. SOURCE Penicillium diatomitis ORGANISM Penicillium diatomitis Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium. REFERENCE 1 (bases 1 to 2625) AUTHORS Petersen,C., Sorensen,T., Nielsen,M.R., Sondergaard,T.E., Sorensen,J.L., Fitzpatrick,D.A., Frisvad,J.C. and Nielsen,K.L. TITLE Comparative genomic study of the Penicillium genus elucidates a diverse pangenome and 15 lateral gene transfer events JOURNAL IMA Fungus 14 (1), 3 (2023) PUBMED 36726175 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2625) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (06-JUN-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2625) AUTHORS Petersen,C. TITLE Direct Submission JOURNAL Submitted (16-DEC-2022) Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_026623180). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2625 /organism="Penicillium diatomitis" /mol_type="mRNA" /strain="IBT 30728" /culture_collection="IBT:30728" /db_xref="taxon:2819901" /chromosome="Unknown" gene <1..>2625 /locus_tag="N7539_006270" /db_xref="GeneID:81626121" CDS 1..2625 /locus_tag="N7539_006270" /note="Argonaute linker 1 domain; Argonaute linker 2 domain; N-terminal domain of argonaute; PAZ domain; Piwi domain" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_056788796.1" /db_xref="GeneID:81626121" /translation="
MQAKPSETGKLALRPGYGTRGKQIQLRANYFKLDFDDGMKIYSYIAKFKPEPSHKRQLPLIWAQILAVKQIRAAHPATDYANELVTTGNLDKAPEFQVTINDREQSTFSVTLERNGLIDPQVLLQGLRDPQKRSLVENEAVVVRAMNILLGAYPGRDAGVVTLGKSNNNRFYWIDRRQQQEDLTTGLVCLRGYYASVRLGGGRMLVNLSVNHSAFYKPGPMEHFIAAFAKYYGQNAELLTRFVKMLQVEVTHLQDSKTKGAPRRRKTIWGVAEPGDGAQDPHPPRISRLGSSPENVSFWHKDKNRYMTVKEYFKMEYNMDITLHMPVMNVGNKQKPVYLPVEVLVIPPGRVFRGELNTIQRQNIIKFSCRRPPQNYDSITDHGLDITGIKGNHTKEFGFSVSQEMITVPARTLNAPRLRYGGGVEEPTFGAWNLIRKKFTRPVSVKRWVPIVIQEGGAQIEGDLNAFESLQNNMNKLGMDMRGMRTPIHYIPLNSNDQQKKRLEQIRKMFEVMKGFQPAVELVVICIPSGVERLFDHIKWLGETQFGIPTHCCMSSKFFKRGNNDQYFANNAMKINLRLGGVNQVLDTPSPLIASGKTMVVGLDVTHPSATDPESFPSIASIVASVDSTMGQWPGQVKIQDPRVEEVQYLKSMLTGRLRRWKQSNKGALPQNILVYRDGVSEGQYDMVVTTELQQIKAATQSLYAANAQPNISIIVGGKRHNTRFFPTNQKDQDRTWNPQPGMVVDRAVTRPIYWEFFLQAQCPLQGSARSARYVVVHDEIFSNPKVKPQLGMSPADAIQELTHSICYMMGRCTRSISYSTPAFLSDRFADRARKYVRAYYYDQLINHNNSRPPAPGDNVTVLHPAVAEQMVYI"
misc_feature 64..450 /locus_tag="N7539_006270" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 505..651 /locus_tag="N7539_006270" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature <715..1038 /locus_tag="N7539_006270" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(796..798,892..894,925..927,937..939,988..990, 1009..1011,1015..1017) /locus_tag="N7539_006270" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1183..2508 /locus_tag="N7539_006270" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1603..1605,1615..1617,1651..1662,1669..1671, 1699..1701,1708..1710,1720..1722,1732..1734) /locus_tag="N7539_006270" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1810..1812,1816..1818,2032..2034,2479..2481) /locus_tag="N7539_006270" /note="active site" /db_xref="CDD:240015" ORIGIN
atgcaggcaaagcccagcgagacgggcaagttggctttgcggcctggatatggcaccaggggaaaacagatccagctgcgtgccaactacttcaagttggattttgacgacggcatgaaaatctactcgtacattgcgaaattcaagccggagcccagccacaagcgccaactaccattgatctgggcgcaaattttggccgtgaaacaaattcgagcggcgcacccagctactgactacgcaaatgaactggtgaccaccggcaaccttgataaagcccctgaattccaggtgaccatcaatgaccgtgagcagtcgaccttctcggtgaccttggagcgcaacggcctcatcgatcctcaagtccttcttcaaggtttgcgagacccgcagaagcgctctcttgtcgagaatgaggccgttgttgttagggctatgaacattctcctcggtgcataccctggccgggacgcgggtgttgtcacactggggaaaagcaacaacaaccgattctactggattgatagacgccagcagcaagaggatcttacgaccggtctggtgtgtcttcgaggttactatgccagtgtgcgacttggcggtggtcgtatgcttgtcaatttgagcgtcaatcatagtgctttctacaagcccggccccatggagcatttcattgcggccttcgcgaagtactatggtcagaatgcagagctcttaacccggtttgtgaagatgctccaagtcgaggtcactcatctgcaggattcgaagacgaagggagcacctcgccgacgcaagactatctggggtgttgcggagcccggtgacggcgcccaggacccccatccacctcggatctcgaggcttgggtcgtctcccgagaatgtaagcttctggcataaggacaagaatcggtacatgaccgtcaaggaatacttcaaaatggaatacaacatggacatcacactgcatatgcctgtgatgaacgtcggcaacaagcagaagcccgtttaccttccagttgaagttctcgtgatccctcctggccgcgttttccgaggcgaactgaacactatccaacgccagaacatcatcaaattcagctgtcggagacctcctcaaaactatgactcaatcacggaccacgggctagatatcacgggaatcaagggcaaccataccaaggaattcgggttttcggtgtcacaagagatgatcactgtgcccgctcgaactttgaacgcgcccagactcaggtatggaggtggcgttgaggagcccacatttggtgcttggaacttgatcagaaagaaatttactcgccctgtctctgtcaaacgctgggtcccaatcgtcattcaggaaggcggtgcccaaatcgagggagatctgaacgcatttgagtcgttgcaaaataatatgaataagctcggcatggacatgaggggcatgaggacccccattcactacatcccactcaactcgaatgaccaacagaagaaacgccttgaacagattcgtaaaatgttcgaggtgatgaaagggttccagccagctgttgagctcgtggtgatttgtattccttcgggcgttgagaggctctttgaccacatcaaatggctcggtgagacacagtttggaattcctactcactgctgtatgagcagcaagttcttcaagcggggcaacaacgaccagtactttgccaacaatgccatgaaaatcaatcttcgcctgggaggtgtcaatcaggtcctggacacaccctctccattgatcgcctccggcaagaccatggttgttggcctcgatgtcactcacccgtccgccactgaccctgagagtttccctagcattgcttcaattgttgcaagcgtggattcgacgatggggcagtggcctggtcaggttaaaattcaggatcctcgcgtggaggaagttcaatacctgaagtcgatgttgacgggacgtcttcgccgctggaagcagagcaacaagggtgctcttcctcaaaacattcttgtctaccgagatggtgtgagtgaaggacagtacgacatggtcgtgacaaccgagcttcaacagatcaaggcagccactcaatctctttacgccgcgaatgctcaacccaatatcagtatcatcgttgggggcaaacgacacaacactcgcttcttccctaccaatcagaaggatcaggacagaacttggaacccccagcctggtatggttgttgatcgcgcggtcactcgccctatttactgggaattcttcctccaggctcagtgtccacttcaaggctccgctcgctccgctcgatatgtggttgtgcacgacgagatcttcagcaaccctaaagtgaagccgcaactcggaatgagccctgcggacgctattcaggaactgactcatagcatttgctacatgatgggccgttgcacacgttctatcagttacagcacgcctgctttcctgtctgaccgatttgccgatcgcgctcgtaagtacgtccgtgcttactattatgaccagttgatcaaccacaacaactctcgtcctcccgcgcccggagacaatgtcacagtgctccatccggcggttgcagagcagatggtttacatttga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]