GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-04-28 02:41:26, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_056679378            3243 bp    mRNA    linear   PLN 02-JUN-2023
DEFINITION  Penicillium coprophilum uncharacterized protein (N7500_008234),
            partial mRNA.
ACCESSION   XM_056679378
VERSION     XM_056679378.1
DBLINK      BioProject: PRJNA973687
            BioSample: SAMN30185323
KEYWORDS    RefSeq.
SOURCE      Penicillium coprophilum
  ORGANISM  Penicillium coprophilum
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae;
            Penicillium.
REFERENCE   1  (bases 1 to 3243)
  AUTHORS   Petersen,C., Sorensen,T., Nielsen,M.R., Sondergaard,T.E.,
            Sorensen,J.L., Fitzpatrick,D.A., Frisvad,J.C. and Nielsen,K.L.
  TITLE     Comparative genomic study of the Penicillium genus elucidates a
            diverse pangenome and 15 lateral gene transfer events
  JOURNAL   IMA Fungus 14 (1), 3 (2023)
   PUBMED   36726175
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3243)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUN-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3243)
  AUTHORS   Petersen,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-DEC-2022) Department of Chemistry and Bioscience,
            Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland
            9220, Denmark
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_026622724).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..3243
                     /organism="Penicillium coprophilum"
                     /mol_type="mRNA"
                     /strain="IBT 35676"
                     /culture_collection="IBT:35676"
                     /db_xref="taxon:36646"
                     /chromosome="Unknown"
     gene            <1..>3243
                     /locus_tag="N7500_008234"
                     /db_xref="GeneID:81418550"
     CDS             1..3243
                     /locus_tag="N7500_008234"
                     /note="Argonaute linker 1 domain; Argonaute linker 2
                     domain; Mid domain of argonaute; N-terminal domain of
                     argonaute; PAZ domain; Piwi domain"
                     /codon_start=1
                     /product="uncharacterized protein"
                     /protein_id="XP_056529750.1"
                     /db_xref="GeneID:81418550"
                     /translation="
MASKKAMKPPAEDDEERRARSGHRSTTSSKPPHSSTSSRQPKLSLELPLRPSAAATKPLDPRQIQELRDHKARLEDDAKRRKEAESTAWMRRTRYDPNATEQRKPKSTGSSSSDSPIRRVETPPEFPPNWTAEEKANYERLAREGVKVAVFEQHRLDQEKVVRHQDYMTVAWDGCKNIDIPWHRFKVRPSSTTPEPTHVQRRVGYNSSGKEIEVMMNAYPINSFPDKAVYQYEINVLHGDQNETDRRVLRKCWNSETRKAHIPDGIWDGGRICWSLRNFDDWNELIDIKGDLTRDIKTLATVDEFRRNPAFRMSVIQKRKINLSVINAWLQNRRDLDELVIESLSFLDHLLREWPTKQFAAIKRAFFFDKLGDDEELKQEFYQPLANMGASVYRGIYQAIKPTPQGLILNVDVAHCVFFSRISLMGYMMNVNGWNDKSTLVKNLQSTRDEYGGTRESKWFAQVNKKIQGLRVAPNYEGCPFKMKSFIVKGLIHAKPKEFFIDYYDKATGKSTRIHLEEYFMKRYNIRLEYPNMLLVEMQKEDVHYPAEFLVIKGLQRYRYKLTDVQAAQMIQWCATRPPKRLANARQSKELLQHKNDPILKLYGMKISEQMIKTKARLLPTPEIQFGGNRKHNPQHSGSWDLRGKKFYKPNEKALQAWGVGFFSGHRKSISQDQTLSWVEQFVKMYKSMGGEVTGRPVVKGLSEDVGTSVKKLYDAIAAQNQKEPQLMVFIVPDKDSWVYLRIKKSADCRYGTPSQVLQSAHCIANRPQYHANVLMKVNAKLGGITARAVPKVKSTGLRPGSMIIGADVTHPMMGVWTPSLAAMSVSANSTATRYMGGCETNGDRIEVIRDKVIEYILHPMVAEWKATVGGGKAPEYVYYFRDGVSASEYQRILSEEVPAIRFAIAHACGQAIWSGKICVVVANKRHHLRAFPDPKNRAAADPHGAPLPGTLIDRDVTSPHDWDFLLYTHIALQGTPRPVHYHVLLDEIGLKPNDLEGMINDHCYQYIRSTTSVSVHPAIYYAHLISVRARHHEDVPITSGPQSGPEVKMTNPKPKEPRAKRLLPIEGTSNRLALGMWYV"
     misc_feature    802..1053
                     /locus_tag="N7500_008234"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    1081..1257
                     /locus_tag="N7500_008234"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    <1387..1656
                     /locus_tag="N7500_008234"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1456..1458,1495..1497,1546..1548,1558..1560,
                     1612..1614,1633..1635)
                     /locus_tag="N7500_008234"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1792..3102
                     /locus_tag="N7500_008234"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2218..2220,2230..2232,2266..2277,2284..2286,
                     2308..2310,2317..2319,2329..2331,2341..2343)
                     /locus_tag="N7500_008234"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2422..2424,2428..2430,2647..2649,3070..3072)
                     /locus_tag="N7500_008234"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
atggcatcgaaaaaggccatgaagcccccagccgaggacgatgaagagcgtagggctcgctctgggcaccgctctacaacatcgtcgaaacctcctcactcctccacatcttctcgtcaaccaaagctcagccttgagcttcccctgcgcccttctgctgccgcgacaaagccactggatccacgtcagatccaagaattacgtgaccacaaggccagactggaagacgacgccaaacgcagaaaagaagcagaaagcactgcctggatgcgccggacccgatatgatcctaatgcgaccgagcagcgaaagcccaagagcaccggttccagtagcagtgactctcccatccgtcgagttgagacacccccggaattcccgcccaactggaccgcagaggaaaaggctaactatgaacgtctcgcaagagaaggggtaaaagtggcagttttcgagcaacacagactcgatcaagaaaaggttgtccgacaccaagactacatgacagttgcctgggatggttgcaagaacattgacattccctggcaccgattcaaagtcaggccttcctctaccaccccagaacctactcatgttcagcgccgtgttggctacaactcttcaggtaaagagatcgaggttatgatgaacgcataccctatcaattctttcccagataaagcggtttatcagtacgagatcaatgttctccatggagaccaaaacgagaccgacagacgtgtccttagaaaatgctggaacagcgagactcgaaaggcacacattcctgatggtatctgggatggtggtagaatttgctggtcgctgcgcaattttgatgactggaatgagcttatcgacatcaagggtgacttgacccgagacatcaaaactcttgctactgtcgatgagttcagaaggaatcctgctttcagaatgtccgttattcaaaaacgaaagatcaacctgtccgtgatcaacgcctggctgcaaaaccgccgtgatctagatgaacttgtgattgaatctctgagtttcctcgatcatttgctccgtgagtggcccaccaagcaatttgctgcaatcaagcgcgcctttttctttgacaagcttggagatgacgaggagctgaagcaggagttttatcagccgctcgccaatatgggtgcttccgtttaccgaggtatctaccaagcaattaaacccactcctcaaggtctaatcctaaatgttgacgtggctcactgcgtcttcttttctcgtatcagtcttatgggctatatgatgaatgtgaatgggtggaacgataagtcgactctggtgaagaatctccagtcaacccgcgacgaatacggcggcacaagggaatcaaagtggtttgcacaggtgaacaaaaagatccaaggtcttcgagtggcacccaactacgagggttgccctttcaagatgaagagtttcattgtcaaaggcttgattcatgcaaagccaaaagagttcttcattgactactacgacaaggccactgggaaatcgactcgaattcacctcgaagaatacttcatgaaacggtacaacatccgccttgaatatcccaatatgctcttggtcgagatgcaaaaggaagatgtccattaccccgccgagttcctcgtcatcaaaggtctccagagataccgctacaagcttaccgatgttcaggcagcacagatgattcaatggtgtgcaaccaggcccccgaaacgtttggccaacgctcgtcagtccaaggaacttctccaacacaagaatgatccgatcctaaagctttatggcatgaagatcagtgaacaaatgatcaagacaaaggctcgcctacttccaacccccgagattcagtttggaggcaaccgcaagcataaccctcagcattcaggaagctgggatctccgaggtaagaagttttacaaacccaatgagaaggccctccaagcttggggtgtcggattcttttccggacatcgaaagtcgattagccaggaccagactctcagctgggttgagcaattcgtgaagatgtacaaaagcatgggtggtgaggtgactggtcgaccggttgtcaagggattaagtgaagacgttggcaccagtgtcaaaaagctgtacgatgcgatcgcagcgcagaaccagaaagagccccagctcatggtgttcatcgttcccgacaaggactcttgggtctatctccgcattaaaaagtctgccgactgtcgatatggcactccctctcaagtgctccaatctgcacactgcatcgccaatagacctcagtatcacgcgaatgtcctcatgaaggtgaatgcaaagcttggtggtatcactgctcgagctgtccccaaggtgaagagtacaggtttacgcccaggttccatgatcattggggcagacgtcactcatccaatgatgggtgtgtggaccccgtcgttggcagccatgtcagtttcggcaaattccaccgcaactcgctacatgggtggatgtgagaccaatggagatcgaattgaggttatccgggacaaagtgattgaatacattctgcatcccatggttgctgagtggaaagcgactgttgggggtggcaaggctcccgagtatgtctactatttccgcgacggtgtgtctgcgtccgaataccagagaatcctttcggaggaagtccctgcaatccgctttgcaattgcacatgcgtgtggtcaggcgatctggagcggcaaaatctgtgttgtggttgccaacaagcgccatcatcttcgagcgttccccgaccccaagaatcgtgcagccgcggacccccacggcgcccccctgccaggcactctgattgatcgagacgtgactagcccacacgattgggacttcctgctctacacacacattgctctgcagggtactccccgtccagttcattaccatgtcctgctggatgagattggtctcaagcccaatgaccttgagggcatgatcaatgatcattgttaccagtacatccgctcgacaacgtctgtgtctgtccaccctgctatctattatgcccacttgatttcggttcgtgcgcgccaccacgaggacgtgcccattacatccggcccccagagtggcccagaggtgaaaatgacaaacccaaagcccaaggagccccgagcaaagagattgcttcccattgaaggcacctcaaacaggctggctctgggtatgtggtacgtctaa
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]