2024-04-28 01:42:00, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_056664052 2934 bp mRNA linear PLN 02-JUN-2023 DEFINITION Penicillium bovifimosum uncharacterized protein (N7515_003308), partial mRNA. ACCESSION XM_056664052 VERSION XM_056664052.1 DBLINK BioProject: PRJNA973687 BioSample: SAMN30185302 KEYWORDS RefSeq. SOURCE Penicillium bovifimosum ORGANISM Penicillium bovifimosum Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium. REFERENCE 1 (bases 1 to 2934) AUTHORS Petersen,C., Sorensen,T., Nielsen,M.R., Sondergaard,T.E., Sorensen,J.L., Fitzpatrick,D.A., Frisvad,J.C. and Nielsen,K.L. TITLE Comparative genomic study of the Penicillium genus elucidates a diverse pangenome and 15 lateral gene transfer events JOURNAL IMA Fungus 14 (1), 3 (2023) PUBMED 36726175 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2934) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (01-JUN-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2934) AUTHORS Petersen,C. TITLE Direct Submission JOURNAL Submitted (29-NOV-2022) Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_026622712). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2934 /organism="Penicillium bovifimosum" /mol_type="mRNA" /strain="IBT 22155" /culture_collection="IBT:22155" /db_xref="taxon:126998" /chromosome="Unknown" gene <1..>2934 /locus_tag="N7515_003308" /db_xref="GeneID:81403222" CDS 1..2934 /locus_tag="N7515_003308" /note="Argonaute linker 1 domain; Argonaute linker 2 domain; N-terminal domain of argonaute; PAZ domain; Piwi domain" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_056523109.1" /db_xref="GeneID:81403222" /translation="
MVGREHASLPIREGRGGGDRGSSRGRGDGRGRGDGRGRGDRGGRGASSTPNLPTRMITDNTDQPDENVHKAEDDYIVASAQVRPEPGRLARRPGYGQLGKQVILRANFFPLQFKPGIVFHSYRLKVSPDNAKKGQQKFIIESLMRKYRAFEGIGAATDGATEIVTTQLLAEDRKPFTCTMGTGGGTGSGGTSRVYTGPWEVTLKHDSSFSPHHMLALLKDKNHGEELPDEAHCLRQLNILMSAFPSESSDISVIGRGRNKFFRMGSGKQAKDMKGGIEAVRGYYSSVRLGASRIMLNLNVSHGAFYQQGSLVDFIVAFVALHGRNRELLNRYLKGVKVYATHLEKRENGSGNLEYPVKSILGVATPADGQGKNSPYKDHPPKVLHVASSPDNVLFWYEQDRKPGYISVTQYFDKSYNTKLKYHDNIPVVNVGTRDRPTYLPAEVLKILPGQGFGGEPDITQRQNMIQFSCRRPPQNYDSIITEGLNIMGLGGGETKRVGIKIPSNAMITVHGRTLPSPELNYGNRYKTRPNYGGWNLIRVKFSHCATIGDWACLLLRKPGAPVIIDKPKPRMDAFANNLRNHGLAVGSCKEYLQLDLYGWERSEGEEKNRQNLDEVFKKLIRYPFVVVLLADTDGKTFDYIKYMGDIKSGVLTHCMQASKFRNEQPDQQYMSNNAMKVNLKLGGRNQVLNPDCAHFVGLGRTMVVGLDVTHPSGSDPESFPSVAAIVAAIDQHMSQWPGEVRGQTRRQERVEYLREMMEGRLALWMKQNKGNPPENILIYRDGVSEGQYAMVLKEELPKIQEAAHRMYPKGGQQPSITIVVCGKRHNVRFYPTKAEEQDRTSNPMNGCVVDRGVTRPIYWDFYLQAQCPLQGSARPAHYIVIHDEIFTNKKLKLSSHPRAPADLVQELTHNICYMMGRATRSISYCTPAFLADKFCDRARKYLLAYYHKHPGIKEGDVLPREVLALSNKCLNKMVYI"
misc_feature 769..921 /locus_tag="N7515_003308" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 925..1344 /locus_tag="N7515_003308" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1063..1065,1183..1185,1222..1224,1234..1236, 1291..1293,1312..1314,1318..1320) /locus_tag="N7515_003308" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1486..2829 /locus_tag="N7515_003308" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1912..1914,1924..1926,1960..1971,1978..1980, 2008..2010,2017..2019,2029..2031,2041..2043) /locus_tag="N7515_003308" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2122..2124,2128..2130,2344..2346,2797..2799) /locus_tag="N7515_003308" /note="active site" /db_xref="CDD:240015" ORIGIN
atggttggtcgtgaacacgctagtttgcccattcgagaaggtcgtggcggcggtgatcgtggtagctcccgaggtcgcggtgatggtcgtggccgtggtgatggtcgcggtcgtggcgatcggggtggccgtggtgcttcttccacgcctaatctgccgactagaatgattaccgacaatacagatcagcctgacgaaaacgttcataaagctgaggatgactacattgtcgcatctgctcaagttcgccctgaacctggacgtctggctagacggcccggttatggacaattaggcaagcaggttatccttagggccaattttttccccttgcaattcaagccagggattgtttttcattcttaccggctcaaggtcagccccgacaatgccaaaaaaggacagcagaagtttatcattgagtctctgatgcgcaaataccgtgcgttcgagggtatcggtgcggcaacggatggcgccactgaaattgtcacaacccagctactcgctgaggatcgaaagccattcacctgcacgatgggaaccggaggtgggactggtagtggaggaacttccagggtctacactggtccttgggaagtcactctgaagcatgacagctctttctctccacaccatatgctggctcttcttaaggacaaaaatcacggagaagagctcccggacgaagctcattgtcttcgtcagctcaacatcctcatgagtgcttttccttccgagagtagtgacatctctgtcatcggcaggggacgaaacaaattcttccgaatggggtctggaaaacaggctaaggacatgaagggtggcattgaagctgtccgtggctattactcaagtgttcgacttggcgcttcccgaatcatgctgaacctgaatgtcagccacggggcgttttaccaacaaggttcgctcgtcgatttcattgttgcgttcgtggcgttgcacggaaggaatcgagagctcctcaaccgatatctgaagggtgttaaggtctacgccacgcacctggaaaagcgagagaacggatccggaaacttggagtaccctgtgaagtctattctcggagttgccactcctgcggatggacagggcaagaacagtccttataaggaccatcctccaaaggttttgcacgttgcatcttctcctgacaatgtcctgttctggtatgaacaagatagaaaaccgggctacataagtgtgacccaatattttgacaagagctacaataccaagctcaaatatcacgacaacataccagttgtcaacgttgggactcgtgatcgtcccacctaccttccggcggaggttctgaagatccttccaggccaaggatttggtggagagccagatataacacaacggcaaaatatgatccaattcagttgccggcggcctcctcagaactatgattcaatcatcaccgagggattgaacatcatgggacttggtggcggagagaccaagagggtgggaatcaagattccctcgaatgccatgatcacggttcatgggcgcaccttgccttcccctgaactgaactatggcaatcgctacaagactagacccaattatggtgggtggaatttgatcagagtcaagttttctcactgcgccaccattggcgattgggcttgtcttctgcttcgcaaaccaggcgcccctgtgatcatcgataaaccaaagcctaggatggacgcttttgctaacaatctgaggaaccatggtctcgcggtcggaagttgcaaggaataccttcagctcgatctttatggatgggagcgatcagagggggaagagaaaaacagacagaatttggatgaagtattcaagaagctgatccggtatccctttgtggtcgtgctgcttgccgacacagacggcaagactttcgattacatcaagtatatgggtgatatcaagtccggtgtccttacgcactgcatgcaagcgtccaagttccgtaacgagcaacccgatcagcaatacatgagcaataatgctatgaaggtcaatcttaagctgggaggacgcaatcaagtcctaaatccagactgtgcacacttcgtcggactcgggaggaccatggtggttggcttggatgtcacgcatccatcaggctctgatcctgagtcattccccagcgttgctgcaattgtcgccgcaattgatcaacacatgagtcaatggcctggagaggttcgaggccagacacgccgccaagaacgagtggagtacctgagggagatgatggagggtcgcctagctttatggatgaagcagaacaagggcaatccgcctgagaacattcttatctaccgtgacggagtcagcgagggccagtatgccatggtcctaaaggaggaacttccgaagatacaggaggcagctcacagaatgtacccgaaaggaggccagcagccgagcatcacgattgttgtctgtggaaaacgtcacaatgtgcgcttctaccctacgaaggccgaagaacaggacagaacgagcaaccccatgaatggatgtgtcgttgaccgcggagtcacccgacctatctattgggacttctacttgcaagcccagtgtcctcttcaaggttcggctagacccgctcactacatcgtcatccacgacgagatctttacgaacaagaagctcaagttaagctcccacccacgagcgccagccgacttagtgcaggaacttacccacaacatctgttacatgatgggccgggctactcgctcgatcagttactgcacgcctgccttcttggctgacaagttctgtgatcgtgcccggaagtatctattggcttattaccataagcatccgggcattaaggaaggcgacgtgctccctcgggaagtcctggcactgtcgaacaagtgtctgaacaagatggtctacatctaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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