GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-04-28 01:42:00, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_056664052            2934 bp    mRNA    linear   PLN 02-JUN-2023
DEFINITION  Penicillium bovifimosum uncharacterized protein (N7515_003308),
            partial mRNA.
ACCESSION   XM_056664052
VERSION     XM_056664052.1
DBLINK      BioProject: PRJNA973687
            BioSample: SAMN30185302
KEYWORDS    RefSeq.
SOURCE      Penicillium bovifimosum
  ORGANISM  Penicillium bovifimosum
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae;
            Penicillium.
REFERENCE   1  (bases 1 to 2934)
  AUTHORS   Petersen,C., Sorensen,T., Nielsen,M.R., Sondergaard,T.E.,
            Sorensen,J.L., Fitzpatrick,D.A., Frisvad,J.C. and Nielsen,K.L.
  TITLE     Comparative genomic study of the Penicillium genus elucidates a
            diverse pangenome and 15 lateral gene transfer events
  JOURNAL   IMA Fungus 14 (1), 3 (2023)
   PUBMED   36726175
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2934)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUN-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2934)
  AUTHORS   Petersen,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-NOV-2022) Department of Chemistry and Bioscience,
            Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland
            9220, Denmark
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_026622712).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..2934
                     /organism="Penicillium bovifimosum"
                     /mol_type="mRNA"
                     /strain="IBT 22155"
                     /culture_collection="IBT:22155"
                     /db_xref="taxon:126998"
                     /chromosome="Unknown"
     gene            <1..>2934
                     /locus_tag="N7515_003308"
                     /db_xref="GeneID:81403222"
     CDS             1..2934
                     /locus_tag="N7515_003308"
                     /note="Argonaute linker 1 domain; Argonaute linker 2
                     domain; N-terminal domain of argonaute; PAZ domain; Piwi
                     domain"
                     /codon_start=1
                     /product="uncharacterized protein"
                     /protein_id="XP_056523109.1"
                     /db_xref="GeneID:81403222"
                     /translation="
MVGREHASLPIREGRGGGDRGSSRGRGDGRGRGDGRGRGDRGGRGASSTPNLPTRMITDNTDQPDENVHKAEDDYIVASAQVRPEPGRLARRPGYGQLGKQVILRANFFPLQFKPGIVFHSYRLKVSPDNAKKGQQKFIIESLMRKYRAFEGIGAATDGATEIVTTQLLAEDRKPFTCTMGTGGGTGSGGTSRVYTGPWEVTLKHDSSFSPHHMLALLKDKNHGEELPDEAHCLRQLNILMSAFPSESSDISVIGRGRNKFFRMGSGKQAKDMKGGIEAVRGYYSSVRLGASRIMLNLNVSHGAFYQQGSLVDFIVAFVALHGRNRELLNRYLKGVKVYATHLEKRENGSGNLEYPVKSILGVATPADGQGKNSPYKDHPPKVLHVASSPDNVLFWYEQDRKPGYISVTQYFDKSYNTKLKYHDNIPVVNVGTRDRPTYLPAEVLKILPGQGFGGEPDITQRQNMIQFSCRRPPQNYDSIITEGLNIMGLGGGETKRVGIKIPSNAMITVHGRTLPSPELNYGNRYKTRPNYGGWNLIRVKFSHCATIGDWACLLLRKPGAPVIIDKPKPRMDAFANNLRNHGLAVGSCKEYLQLDLYGWERSEGEEKNRQNLDEVFKKLIRYPFVVVLLADTDGKTFDYIKYMGDIKSGVLTHCMQASKFRNEQPDQQYMSNNAMKVNLKLGGRNQVLNPDCAHFVGLGRTMVVGLDVTHPSGSDPESFPSVAAIVAAIDQHMSQWPGEVRGQTRRQERVEYLREMMEGRLALWMKQNKGNPPENILIYRDGVSEGQYAMVLKEELPKIQEAAHRMYPKGGQQPSITIVVCGKRHNVRFYPTKAEEQDRTSNPMNGCVVDRGVTRPIYWDFYLQAQCPLQGSARPAHYIVIHDEIFTNKKLKLSSHPRAPADLVQELTHNICYMMGRATRSISYCTPAFLADKFCDRARKYLLAYYHKHPGIKEGDVLPREVLALSNKCLNKMVYI"
     misc_feature    769..921
                     /locus_tag="N7515_003308"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    925..1344
                     /locus_tag="N7515_003308"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1063..1065,1183..1185,1222..1224,1234..1236,
                     1291..1293,1312..1314,1318..1320)
                     /locus_tag="N7515_003308"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1486..2829
                     /locus_tag="N7515_003308"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1912..1914,1924..1926,1960..1971,1978..1980,
                     2008..2010,2017..2019,2029..2031,2041..2043)
                     /locus_tag="N7515_003308"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2122..2124,2128..2130,2344..2346,2797..2799)
                     /locus_tag="N7515_003308"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
atggttggtcgtgaacacgctagtttgcccattcgagaaggtcgtggcggcggtgatcgtggtagctcccgaggtcgcggtgatggtcgtggccgtggtgatggtcgcggtcgtggcgatcggggtggccgtggtgcttcttccacgcctaatctgccgactagaatgattaccgacaatacagatcagcctgacgaaaacgttcataaagctgaggatgactacattgtcgcatctgctcaagttcgccctgaacctggacgtctggctagacggcccggttatggacaattaggcaagcaggttatccttagggccaattttttccccttgcaattcaagccagggattgtttttcattcttaccggctcaaggtcagccccgacaatgccaaaaaaggacagcagaagtttatcattgagtctctgatgcgcaaataccgtgcgttcgagggtatcggtgcggcaacggatggcgccactgaaattgtcacaacccagctactcgctgaggatcgaaagccattcacctgcacgatgggaaccggaggtgggactggtagtggaggaacttccagggtctacactggtccttgggaagtcactctgaagcatgacagctctttctctccacaccatatgctggctcttcttaaggacaaaaatcacggagaagagctcccggacgaagctcattgtcttcgtcagctcaacatcctcatgagtgcttttccttccgagagtagtgacatctctgtcatcggcaggggacgaaacaaattcttccgaatggggtctggaaaacaggctaaggacatgaagggtggcattgaagctgtccgtggctattactcaagtgttcgacttggcgcttcccgaatcatgctgaacctgaatgtcagccacggggcgttttaccaacaaggttcgctcgtcgatttcattgttgcgttcgtggcgttgcacggaaggaatcgagagctcctcaaccgatatctgaagggtgttaaggtctacgccacgcacctggaaaagcgagagaacggatccggaaacttggagtaccctgtgaagtctattctcggagttgccactcctgcggatggacagggcaagaacagtccttataaggaccatcctccaaaggttttgcacgttgcatcttctcctgacaatgtcctgttctggtatgaacaagatagaaaaccgggctacataagtgtgacccaatattttgacaagagctacaataccaagctcaaatatcacgacaacataccagttgtcaacgttgggactcgtgatcgtcccacctaccttccggcggaggttctgaagatccttccaggccaaggatttggtggagagccagatataacacaacggcaaaatatgatccaattcagttgccggcggcctcctcagaactatgattcaatcatcaccgagggattgaacatcatgggacttggtggcggagagaccaagagggtgggaatcaagattccctcgaatgccatgatcacggttcatgggcgcaccttgccttcccctgaactgaactatggcaatcgctacaagactagacccaattatggtgggtggaatttgatcagagtcaagttttctcactgcgccaccattggcgattgggcttgtcttctgcttcgcaaaccaggcgcccctgtgatcatcgataaaccaaagcctaggatggacgcttttgctaacaatctgaggaaccatggtctcgcggtcggaagttgcaaggaataccttcagctcgatctttatggatgggagcgatcagagggggaagagaaaaacagacagaatttggatgaagtattcaagaagctgatccggtatccctttgtggtcgtgctgcttgccgacacagacggcaagactttcgattacatcaagtatatgggtgatatcaagtccggtgtccttacgcactgcatgcaagcgtccaagttccgtaacgagcaacccgatcagcaatacatgagcaataatgctatgaaggtcaatcttaagctgggaggacgcaatcaagtcctaaatccagactgtgcacacttcgtcggactcgggaggaccatggtggttggcttggatgtcacgcatccatcaggctctgatcctgagtcattccccagcgttgctgcaattgtcgccgcaattgatcaacacatgagtcaatggcctggagaggttcgaggccagacacgccgccaagaacgagtggagtacctgagggagatgatggagggtcgcctagctttatggatgaagcagaacaagggcaatccgcctgagaacattcttatctaccgtgacggagtcagcgagggccagtatgccatggtcctaaaggaggaacttccgaagatacaggaggcagctcacagaatgtacccgaaaggaggccagcagccgagcatcacgattgttgtctgtggaaaacgtcacaatgtgcgcttctaccctacgaaggccgaagaacaggacagaacgagcaaccccatgaatggatgtgtcgttgaccgcggagtcacccgacctatctattgggacttctacttgcaagcccagtgtcctcttcaaggttcggctagacccgctcactacatcgtcatccacgacgagatctttacgaacaagaagctcaagttaagctcccacccacgagcgccagccgacttagtgcaggaacttacccacaacatctgttacatgatgggccgggctactcgctcgatcagttactgcacgcctgccttcttggctgacaagttctgtgatcgtgcccggaagtatctattggcttattaccataagcatccgggcattaaggaaggcgacgtgctccctcgggaagtcctggcactgtcgaacaagtgtctgaacaagatggtctacatctaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]