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2024-04-28 07:32:25, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_056628754            3114 bp    mRNA    linear   PLN 06-JUN-2023
DEFINITION  Penicillium cosmopolitanum uncharacterized protein (N7509_004117),
            partial mRNA.
ACCESSION   XM_056628754
VERSION     XM_056628754.1
DBLINK      BioProject: PRJNA973687
            BioSample: SAMN30185324
KEYWORDS    RefSeq.
SOURCE      Penicillium cosmopolitanum
  ORGANISM  Penicillium cosmopolitanum
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae;
            Penicillium.
REFERENCE   1  (bases 1 to 3114)
  AUTHORS   Petersen,C., Sorensen,T., Nielsen,M.R., Sondergaard,T.E.,
            Sorensen,J.L., Fitzpatrick,D.A., Frisvad,J.C. and Nielsen,K.L.
  TITLE     Comparative genomic study of the Penicillium genus elucidates a
            diverse pangenome and 15 lateral gene transfer events
  JOURNAL   IMA Fungus 14 (1), 3 (2023)
   PUBMED   36726175
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3114)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAY-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3114)
  AUTHORS   Petersen,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-DEC-2022) Department of Chemistry and Bioscience,
            Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland
            9220, Denmark
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_026622675).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..3114
                     /organism="Penicillium cosmopolitanum"
                     /mol_type="mRNA"
                     /strain="IBT 29677"
                     /culture_collection="IBT:29677"
                     /db_xref="taxon:1131564"
                     /chromosome="Unknown"
     gene            <1..>3114
                     /locus_tag="N7509_004117"
                     /db_xref="GeneID:81367734"
     CDS             1..3114
                     /locus_tag="N7509_004117"
                     /note="Argonaute linker 1 domain; Argonaute linker 2
                     domain; N-terminal domain of argonaute; PAZ domain; Piwi
                     domain"
                     /codon_start=1
                     /product="uncharacterized protein"
                     /protein_id="XP_056491488.1"
                     /db_xref="GeneID:81367734"
                     /translation="
MSDNRGRGRGRGDRGDRGGGDRGGRGRGRGDGNGSGRGDTSMPFRPARGRGGDDNYRGRGGGNRGGSDRGGRGRGGDDGYRGRGGGRGRGDDGYRGRGGDRGGRGGRGGFQSGPQGPSIYRAGQSVPAPDANVLKTENALAKSLVGFKQADQAYPLRPGYGTLGKEVTLYANYLSLTGLAKGKLLHRYNVEIVAEKVRDAPAGKKARQIIACLVDEHFAAQKSHVATDYRSTIISAVDLNLTEGQTFNIRYKAEGEDEYPEDPRVYQVKCGDMLATKPELIAALNIIMGHHPKTSTDVVSVGANKHFGVSSQLIDRQDLSGGLEVLRGFFISVRAATARVLLNVQVKYVACYKAGSLAQTIQDFRNGAEYRYAYDGKKSYLLAKFLTRMRITPNHIKRKTSSGKPRPAPPKTISGLAKREDGRSSPNPPKVARDGAGPNDVQFFLRAPGQAAPKAAGAGKKGKKGPAPAGPAQAGKYVSVAQYFLDSYGMNINNEFPVINVGSRAEPSYLPVEACDVPVGQPVANKLSPDQTKNMLNFAVRGRSPAQNAEAIATNGVSMLGVNPPNGTLASFGVGVNPDLITVKGRVLPAPTVYYKNNKSFTPVRGSWNMQDIKFCKSGALKNWTFIFFPGRQYDRMSNTDVNDLLSTFADHLRKAGIAVEAPKQGARILQPQPGNIQKEIKGLLDKHGKLDLILGIMSNTDTAIYNSIKQTCDVTYGVKNVNVQASKLTSDRGLDQYCANVGLKINLKLGGANQSLKNMGLFGDGKTIVAGIVASVDKDLAQWPADIVVQKRRDEMVSDLDRLLQSRIRLWASHNEGAFPENIVVYRDGVSEGQYNLVIDKELPLLKQACKTVYSAKDTANGLPKMAIIIVGKRHNTRFYPTNPGDAERSNNPQPGTVVDRGISEGRSWDWYQQAHSCLQGTARPAHYFTVWDEIFHPKYPSDANGPGAADVLQELTHKMCYLFGRATKAVSVCPPAYYADLVCTRARCYLHHVFDPSTPSASVAGTERSGNNDPTLSDSKTYRPHELVKDTMFYI"
     misc_feature    904..1059
                     /locus_tag="N7509_004117"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    1069..1551
                     /locus_tag="N7509_004117"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1231..1233,1327..1329,1438..1440,1450..1452,
                     1501..1503,1522..1524,1528..1530)
                     /locus_tag="N7509_004117"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1702..2976
                     /locus_tag="N7509_004117"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2116..2118,2128..2130,2164..2175,2182..2184,
                     2212..2214,2221..2223,2233..2235,2245..2247)
                     /locus_tag="N7509_004117"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
ORIGIN      
atgtccgataatcgtggtcgaggccgaggccgtggagaccgtggagaccgaggaggaggagatcgtgggggtcgcggacgcggccgtggtgacggcaacggcagtggccgtggtgataccagcatgccattccgcccagcaagaggtcgtggaggggatgataactatcgaggtcgtggaggaggcaatcgaggcggaagtgatcgaggaggccgcggtcgtggaggggacgacggctaccgaggtcgtggaggaggccgtggtcgcggagacgacggctatcgcggccgcggaggcgatcgtggaggtcgaggtggtcgtggtggatttcaatctggaccacagggtcccagcatctatcgtgcaggtcaatccgtccccgcccccgatgccaacgttctcaagaccgagaacgccctcgcaaaatccctcgtgggcttcaagcaagccgatcaggcatatcccttgcgcccgggatatggaaccctaggcaaagaggtgactttgtacgccaactacctgtcgctcacaggtcttgccaaggggaagcttctgcaccgatataatgtcgagatcgtggccgagaaagttcgggacgctccagctggaaagaaagctcgccagattatcgcctgcctcgttgacgaacacttcgccgcccagaaatcccacgtcgcaactgattatcgctccacaatcatctcggctgtcgacctcaatcttactgagggccagaccttcaacatcagatacaaggccgaaggcgaagacgaataccccgaggaccctcgcgtgtaccaagtcaaatgcggggacatgctagccaccaagccagagctcatcgccgctctaaacatcattatgggccaccaccccaagaccagcaccgacgtagtctccgtcggagctaacaagcatttcggagtctccagtcagctcatagatcgtcaggatctctccggtggtctcgaggttcttcgcggatttttcatcagtgtccgcgcggctaccgcacgggtgttgctgaacgtccaggtcaagtatgtggcctgctacaaggcaggctctttagcccagaccatccaggacttccggaatggtgcagagtacagatatgcatacgatggcaagaagtcttaccttcttgctaaattcttgacgcgtatgcgcatcacgccaaaccatatcaagcgcaagacaagcagtggaaagcctcgacctgccccgcccaagactatttccggtctggccaagagggaagatggtagatcatccccaaatccgcctaaggtcgctcgtgatggcgctggtcccaatgatgtgcagttcttcttgagagccccaggtcaagcggcgccgaaagcagctggggctggcaagaagggtaagaagggcccagctcccgccggcccagctcaggcagggaaatacgtttctgttgcacaatacttcttggattcatacggcatgaatattaacaacgagttccctgttatcaatgtcggcagccgagccgagcctagctatctgcccgttgaggcatgcgatgtcccagttggtcagccagtggccaacaaactgtcgccagaccagacaaagaacatgctcaactttgcagttagaggtcgtagcccagcgcagaatgccgaggccatcgcgaccaacggcgtgagcatgctaggagttaacccgccgaacggtacactggcatcatttggcgtcggcgtgaacccggatctgatcactgtcaagggccgtgtcctccctgcgccgacagtctactacaaaaacaacaagtctttcacccctgtcagaggttcctggaacatgcaagatatcaagttctgcaaatccggcgccctgaagaactggacatttatcttcttccctggaagacagtacgatcgaatgagcaacacagacgtcaacgacttgttgtcaactttcgccgatcatctcaggaaggcaggcattgccgttgaggcaccaaagcagggcgcccggattctacaaccgcagccaggaaatatccagaaggagataaagggccttctcgataaacacggcaaactggatctgatccttggtatcatgtccaacacagacaccgccatttacaacagtataaaacagacctgcgatgtaacctacggcgtcaagaacgtcaacgttcaagcaagcaagctcacatcggaccgaggtctcgaccaatactgcgccaacgtgggcctgaaaatcaacctaaaactcggcggcgccaaccaaagcctcaagaacatgggcctattcggcgatggcaagaccatcgtcgccggcatcgtcgcctcggtcgacaaagacctcgcccaatggcccgcggacatcgtcgtgcaaaaacgccgcgacgaaatggtctcagacctcgaccgactactccagtctcgaatccgcctctgggcctcccacaacgagggcgcattcccagaaaacattgtggtctaccgtgacggtgtcagcgaaggccaatacaacctcgtcatcgacaaggaacttcccctcctcaaacaggcctgcaaaaccgtctactcggcaaaggacaccgcaaatggtctcccaaagatggcaatcataatcgtcggcaagcgacacaacacccgcttctacccaaccaacccaggcgacgccgagaggtcgaacaacccgcagccgggaaccgtcgtcgacagaggaatctccgaaggccgctcctgggattggtaccagcaagctcactcttgcttgcagggaaccgcccgtccggcacactacttcacagtctgggacgagattttccaccccaaataccccagtgatgcgaacgggcccggcgcggcggatgtgctgcaggagttgacgcataaaatgtgttatctctttggtcgggcgacgaaggcagtttctgtctgtccaccggcgtattatgctgaccttgtctgtacgcgggcgagatgttacttgcatcatgtttttgatccgtcgactccttctgctagtgttgcaggcacggagaggagtgggaataatgacccgactctttctgattcgaagacttaccgcccgcatgaacttgttaaggataccatgttctatatctag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]