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Previous release (v1)
2026-01-14 22:14:36, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_052928700 6756 bp mRNA linear INV 13-JAN-2023
DEFINITION PREDICTED: Mya arenaria uncharacterized LOC128220342
(LOC128220342), mRNA.
ACCESSION XM_052928700
VERSION XM_052928700.1
DBLINK BioProject: PRJNA918361
KEYWORDS RefSeq.
SOURCE Mya arenaria
ORGANISM Mya arenaria
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia;
Autobranchia; Heteroconchia; Euheterodonta; Imparidentia;
Neoheterodontei; Myida; Myoidea; Myidae; Mya.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_069136) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_026914265.1-RS_2023_01
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.1
Annotation Method :: Gnomon; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6756
/organism="Mya arenaria"
/mol_type="mRNA"
/isolate="MELC-2E11"
/db_xref="taxon:6604"
/chromosome="15"
/sex="female"
/tissue_type="Siphon/mantle"
/geo_loc_name="USA: Larrabe Cove, Machiasport, ME"
/collection_date="2018-06-01"
gene 1..6756
/gene="LOC128220342"
/note="uncharacterized LOC128220342; Derived by automated
computational analysis using gene prediction method:
Gnomon. Supporting evidence includes similarity to: 6
Proteins"
/db_xref="GeneID:128220342"
CDS 320..1534
/gene="LOC128220342"
/codon_start=1
/product="uncharacterized protein LOC128220342"
/protein_id="XP_052784660.1"
/db_xref="GeneID:128220342"
/translation="
MTVGWVTLNIGEQALVYNHEGQARIEDGPQRMFLLRERIFMLTRYSANQNEYLVIKHRDGRMEHVQGPCAMFLNTIAYHSMKTEDMISLDANEALVVYKKEEKSNEVKRYIKYGPTMFMPLANEWLHSFCWHGTDPSNKTRLIPNQKRFERLQIIPDQFYYNVDEVRTADDALIRVKLMIFYELTDIELMLQTTRDPIADFINCVCADTMAFAAKHSYIEFIENSSELNILSSFPQLTGRAKSIGYSISKVVFRGYFAHEKLQKLHDGAIEVRTKLKICYETEEQEQNMTDLKLKNEKDRIDLEQKIEFEVLAHKLELERSAAEHQLEMEMKEEEMNCSKWLTDSRDILQAKMFRDKQQLEFYNDLHSLSVDLNMYTKTLSGKPERVTRILAAGKAANLHLHHS"
polyA_site 6756
/gene="LOC128220342"
/experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN
ttatgcctatcaactggcgtaaagtaattatttaagaaaggatataagaataaatatatatgattaaaaaaaatgccattaaaagttttcatccaattttggatgaaaatcttgtggtggcagtgattactgtactgcaagggaagtaacactgcgcggagtttgaaaaacaacctgttgtttttgaaaataatggccgaggagctccgaatgccagacaatagtgttgtatagcctaatgattataagaatacaagaactttgatatcaacatactgtacatagattttcaagttaaaaactattttggttggcaaacatgactgtaggatgggtcacattaaatatcggcgagcaggcactggtttacaatcatgaagggcaggcaagaatagaagatgggccacaaaggatgttcctacttcgagagaggatattcatgttgacacgatactctgccaatcagaatgaatatcttgtcatcaagcaccgtgatggaaggatggaacatgttcagggaccatgtgccatgttcttgaacaccattgcctatcactccatgaaaacagaagacatgatttcattggatgccaacgaagcgctggttgtttacaaaaaagaagaaaagtccaatgaagtgaagcgttacattaagtatggaccaaccatgttcatgcctttagccaatgaatggctgcactctttttgctggcatggaacagatccctcaaacaagacacgtctcattccaaatcagaaacgttttgagcggctacagataattccagaccagttttattacaacgtagatgaagtacggacagctgatgatgctcttattcgcgtgaaattgatgattttctatgaacttactgatattgagctgatgttacaaacaacaagggatccaatagcagatttcattaactgtgtgtgtgcagataccatggcctttgccgcaaagcacagttatatcgagtttattgagaattcttcagagctcaacatcttgagcagtttcccacagttgactgggcgtgccaaatccattggttacagcatatccaaagttgtgtttcgcgggtattttgcacatgagaagctacagaaactgcacgatggggccattgaagttagaacaaaacttaaaatctgttatgagacagaagaacaagaacagaatatgactgatctaaaactgaaaaatgaaaaggatcgaatagatcttgagcaaaagatagagtttgaggtcctagcccacaagctagagttagagaggtcagcggctgagcatcagctagaaatggagatgaaagaagaggaaatgaattgcagcaaatggctcactgattccagggatatactgcaggctaagatgtttagagacaagcagcagttggaattctacaatgacctgcacagtctcagtgtcgatctcaacatgtacacaaagacattgtcagggaaaccagaaagagtcaccaggatcttagctgctggcaaagctgcaaatcttcatcttcaccactcttaaaataacagcatgtttttcagagaacttttatgatagatcttcatttctgcaaacttaatcaacacagcatattgggtgatccacgaattcaagatcccacaaaatatagaccctttattcaccttttcaattgccatgttatgtacatactctagataatatacgtatcactgtatatcttattatgccccccttcgaagaagaagggtatattgctttgcacgtgtctgtcagttggtaggtctgtcattctgtcggtataccaaagcttgtccgagtgcacccgtggccctcaaacttgacttggaggttgggcctgaccagtagatgtctcctattgattttagggctcatcatgtcaaggtcacagtgaacttttaatgataaaataattttaaagcttgtccaagtgataactcaacaatgcctagacctaaggtcattaaacttgatatgaaaccctattcagtagatgacccctattgtttttggggctcatcgggccaacaatgcctgcacccatggccctcaaacttgacttggaggttgggcttgaccagtagatgacccctattgattttaggtgtcatcgggccaaaggtcaaggtcacagtgaccttgaatgataaaaggttgtcctactgatttaactcaacaatgccttcacccatggccctcaaacttgacttgtaggttggacctgaccaatagatgacccctattgattttaggggtcaaaggtcaatgtcacagtgaccgtgaatgcgaaaacttgtttgatttgtaactcaacaatgcctgcacccatgcctttcacacttgacctggaggttgggcctgaccaatagatgccccctatttattttaggggtcattgggccaaagatcaatgtcacagtgaccttgaatgatcaatggataactcaacaatgccttcacccatggccctcaaacttgacttggaggttggacctgaccaatagatgacccctattgattttaggggtcaaaggtcaatgtcacagtgaccgtgaatgcgaaaacttgtttgagttataactcgacaatgcctacacccatgaccctcacacttgacctggagtttaggcctgaccaattgatgacccctattgattttaggggtcatcaggccaatggtcaaggtcacagtgaccttgaatgataaaaggttgtccaagttataactcaacaatgcctgcacccatggccctcaaacttgactttgaggttgggcctgaccagtagatgacccctattgattttaggtgtcattgggtcaaagtcacagtgaccttgaatgataaaaggttgtctgactgataactcaacaatgcctacacccatggccctcaaacttgacttggaggttggacctaaccagtaggagacccctattgattttaagggtcagctgatgactcctattgattgtagggctcattgggtcaaaggtcaaggtcacagtgtcctttaatgataaaataattttaaagcttgtccgaataataactccacaatgcctagacctatggtcatcaaactggatatgaatgatgggcctgaccagtatatgacccctattgttttggggggtcattgggccaaaggtcaaggtcacagtgactttgattggttaaaggttgtccaagtgataactcgacaatgcctgcaccaatggccctcaaacttgacttggaggttgggcctgaccagtagatgacccctattgattttaggggtcattggtccaaaggtcaaggtcacagtgaccttgaatgataaaaggttgtcctactgataactcagcaatgccttcacccatggccctcaaacttgacttggaggttggacctgaccaatagatgacccgtattgattttaggggtcaaaagtcaatgtcacagtgacagtgaatgtgaaattgtttgagttgtaactcgacaatgcctgcacccatggccatcacacttgacctgaaagttgggcctgaccaatagatgacccataatgattttcggggtcattgggcctaaggtcaggacggtcacagtaaccttgaatgataaaagcttgtctgattaataactcgacaatgcctgcacccattggccctcaaacttgacttggaggttgaacctgatcaatagataacccctattgatttcaagggtcaaaggtcaatgtcacagtgaccgtgaattcaaaaacttgtttgatttgtaactcaacaatgcctgcacccatgcccctcacacttgacgtggaagttgggcctgaccaatagatgacccctattgatttaaggggtcaaaggtcaatatcacagtaaccgtgaatgcaaaaacttgtttgaattattactcgacaatgcctgcacccatggccctcacacttgacgtggaagttgggcctgaccaatagatgacccctattgatttaaggggtcatcaggccaaaggtcaaggtaacagtgaccttgaatgataaaaggttgtcctactgataacgcaacaatgcctgcacccatagccctcaaacttgacttaccgtttgtgtcttcctgtagatgacaccttatgattttaagggtcaaaggtcaaggtcacggtgacctttgaatgataaaaggttgtcctaccgataactcaacaatgcctgcacccatagacctcaaacttgacttggagtttgcgtcgacctgtagatgacaccttatgattttacgggtcaaaggtcaaggtcagagtgaccttgaatgaaaaaagcttttgtgtgattaacttgacaatacctgcacctatagccctcaaacttgacattcaggtttttggtgaccagctgatgactttaaggggtcatcaggccaaaggtcaaggtcacagtgaccttgaatgataaaaggttatccaagagataactgaacaatgcctgcacccatggccctcaaacttgacttggaggttgggcctgaccagtagatgacccctattgattttaggggtcattggtccaaaggtcaaggtcacagtgaccttgaatgataaaaggttgtcctactgataactcggcaatgccttcacccatggccctcaaacttgacttggaggttggacctgaccaatagatgacccgtattgattttaggggtcaaaagtcaatgtcacagtgacagtgaatgtgaaattgtttgagttgtaactcgacaatgcctgcacccatggccatcacacttgacctgaaagttgggcctgaccaatagatgacacctatggatttaaggggtcattgggccaaagttcagggtcacagtgaccttgaatgttaaaagcttgtctgactgataactcaaccatgcctgcacccatggccctcaaacttgacttggaggttggacctgaccaatagatgacccctattgattttaagggtcaaaggtcaatgtcacagtgaccctcagtgcaaaaacttgtttgagttttaactcgacaatgcctacacccatgaccctcacacttgacctggagtttgggcctgaccaattgatgacccctattgatttcaggggtcatcgggccaaaggtcaaggtcacagtgaccttgaatgataaaagtttgtccaagagataactcaacaatgcctgcacccatggccctcaaacttgacttggaggttggacctgaccaaaagatgacccctattgattttaggggtcacagtgaccgtgaatgtgaatttttgttttgatttataactcgacaatgcctgcacccatgcccctcacacttaacctggagtttgggcctgaccaatagatgacccctatttatttaaggggtcttcgggccaaaggtcaaggtcacagtgaccttgaatgataaaagcttgtctgactgataacgacaatgcctgcacccatggccctcaaacttgacttggaggttggacctgaccaatagatgacccctattgattttaagggtcaaaggtcaatgtcacagtgaccgtgaatgcaaaaacttgtttgatttgtaactcaacaatgcctgcacccatgcccctcacacttgacgtggaagttgggcctgaccaatagatgacccctattgattttaggggtcatcggtcacagtgacagtgaatgtgaaaatttgtttagagttgtaactggacaatgcctacacccatgcccctcacacttgacctggagtttgggcctgaccaatagatgacccctatttattttaggggtcatcgggccaaaggtcaaggtcacagtgaccttgaatgataaaaggtatcatacctactgataactcaacaatgccttcacccatggccctcaaacttgacctggagttagggcctgaccaattgatgacccctattgatttgaggggtcatcgggccaaaggtcaaggtcacagtgaccttgaatgataaaaggatgtctaagtgataactcaacaatgcctgcacccatggccctcaaacttgacttggaggttggacctgactagtagaatgatgacccctattgattttaggggtcattggtccaaaggtcaaggtcacagtgaccttgaatgataaaaggttgtcctactggtaactcagcaatgccttcacccatggccctcaaacttgactttgaggttggactttaccaatatatgacccctattgattttaggggtcaaggtcacagtgaccgtgaatgccaaaattttttttgcgatttaactcgacaatgcctgcacccatggccctcaaacttgacttggagtttgcgtctgacctttagatgacaccttatgattttatgggtcaaaggtcaaggtcacagtgaccttgaacgaaaaaagcttgtttgtgtgataacttgacaatgcccatggccctcaaacttgacattcaggtttttggtgaccagctgatgactcctatggatattatcattgagtcaaaggtcatggtcataacacactcttgcctttgaatgttcataaaatcttaaaacagcctcaacggcattcaatgtctgtgactaatcagctgtcatttcggtcaattgtccatataattctgacaacatggcgctcagggggggggggcataatgtttgacgaacatctcttattatcatcgttttggtattactattatatctgcctttaaaaaataataaaccaaatcattttaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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