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2026-01-14 22:14:36, GGRNA.v2 : RefSeq release 232 (Sep, 2025)

LOCUS       XM_052928700            6756 bp    mRNA    linear   INV 13-JAN-2023
DEFINITION  PREDICTED: Mya arenaria uncharacterized LOC128220342
            (LOC128220342), mRNA.
ACCESSION   XM_052928700
VERSION     XM_052928700.1
DBLINK      BioProject: PRJNA918361
KEYWORDS    RefSeq.
SOURCE      Mya arenaria
  ORGANISM  Mya arenaria
            Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia;
            Autobranchia; Heteroconchia; Euheterodonta; Imparidentia;
            Neoheterodontei; Myida; Myoidea; Myidae; Mya.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_069136) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_026914265.1-RS_2023_01
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6756
                     /organism="Mya arenaria"
                     /mol_type="mRNA"
                     /isolate="MELC-2E11"
                     /db_xref="taxon:6604"
                     /chromosome="15"
                     /sex="female"
                     /tissue_type="Siphon/mantle"
                     /geo_loc_name="USA: Larrabe Cove, Machiasport, ME"
                     /collection_date="2018-06-01"
     gene            1..6756
                     /gene="LOC128220342"
                     /note="uncharacterized LOC128220342; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 6
                     Proteins"
                     /db_xref="GeneID:128220342"
     CDS             320..1534
                     /gene="LOC128220342"
                     /codon_start=1
                     /product="uncharacterized protein LOC128220342"
                     /protein_id="XP_052784660.1"
                     /db_xref="GeneID:128220342"
                     /translation="
MTVGWVTLNIGEQALVYNHEGQARIEDGPQRMFLLRERIFMLTRYSANQNEYLVIKHRDGRMEHVQGPCAMFLNTIAYHSMKTEDMISLDANEALVVYKKEEKSNEVKRYIKYGPTMFMPLANEWLHSFCWHGTDPSNKTRLIPNQKRFERLQIIPDQFYYNVDEVRTADDALIRVKLMIFYELTDIELMLQTTRDPIADFINCVCADTMAFAAKHSYIEFIENSSELNILSSFPQLTGRAKSIGYSISKVVFRGYFAHEKLQKLHDGAIEVRTKLKICYETEEQEQNMTDLKLKNEKDRIDLEQKIEFEVLAHKLELERSAAEHQLEMEMKEEEMNCSKWLTDSRDILQAKMFRDKQQLEFYNDLHSLSVDLNMYTKTLSGKPERVTRILAAGKAANLHLHHS"
     polyA_site      6756
                     /gene="LOC128220342"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
ttatgcctatcaactggcgtaaagtaattatttaagaaaggatataagaataaatatatatgattaaaaaaaatgccattaaaagttttcatccaattttggatgaaaatcttgtggtggcagtgattactgtactgcaagggaagtaacactgcgcggagtttgaaaaacaacctgttgtttttgaaaataatggccgaggagctccgaatgccagacaatagtgttgtatagcctaatgattataagaatacaagaactttgatatcaacatactgtacatagattttcaagttaaaaactattttggttggcaaacatgactgtaggatgggtcacattaaatatcggcgagcaggcactggtttacaatcatgaagggcaggcaagaatagaagatgggccacaaaggatgttcctacttcgagagaggatattcatgttgacacgatactctgccaatcagaatgaatatcttgtcatcaagcaccgtgatggaaggatggaacatgttcagggaccatgtgccatgttcttgaacaccattgcctatcactccatgaaaacagaagacatgatttcattggatgccaacgaagcgctggttgtttacaaaaaagaagaaaagtccaatgaagtgaagcgttacattaagtatggaccaaccatgttcatgcctttagccaatgaatggctgcactctttttgctggcatggaacagatccctcaaacaagacacgtctcattccaaatcagaaacgttttgagcggctacagataattccagaccagttttattacaacgtagatgaagtacggacagctgatgatgctcttattcgcgtgaaattgatgattttctatgaacttactgatattgagctgatgttacaaacaacaagggatccaatagcagatttcattaactgtgtgtgtgcagataccatggcctttgccgcaaagcacagttatatcgagtttattgagaattcttcagagctcaacatcttgagcagtttcccacagttgactgggcgtgccaaatccattggttacagcatatccaaagttgtgtttcgcgggtattttgcacatgagaagctacagaaactgcacgatggggccattgaagttagaacaaaacttaaaatctgttatgagacagaagaacaagaacagaatatgactgatctaaaactgaaaaatgaaaaggatcgaatagatcttgagcaaaagatagagtttgaggtcctagcccacaagctagagttagagaggtcagcggctgagcatcagctagaaatggagatgaaagaagaggaaatgaattgcagcaaatggctcactgattccagggatatactgcaggctaagatgtttagagacaagcagcagttggaattctacaatgacctgcacagtctcagtgtcgatctcaacatgtacacaaagacattgtcagggaaaccagaaagagtcaccaggatcttagctgctggcaaagctgcaaatcttcatcttcaccactcttaaaataacagcatgtttttcagagaacttttatgatagatcttcatttctgcaaacttaatcaacacagcatattgggtgatccacgaattcaagatcccacaaaatatagaccctttattcaccttttcaattgccatgttatgtacatactctagataatatacgtatcactgtatatcttattatgccccccttcgaagaagaagggtatattgctttgcacgtgtctgtcagttggtaggtctgtcattctgtcggtataccaaagcttgtccgagtgcacccgtggccctcaaacttgacttggaggttgggcctgaccagtagatgtctcctattgattttagggctcatcatgtcaaggtcacagtgaacttttaatgataaaataattttaaagcttgtccaagtgataactcaacaatgcctagacctaaggtcattaaacttgatatgaaaccctattcagtagatgacccctattgtttttggggctcatcgggccaacaatgcctgcacccatggccctcaaacttgacttggaggttgggcttgaccagtagatgacccctattgattttaggtgtcatcgggccaaaggtcaaggtcacagtgaccttgaatgataaaaggttgtcctactgatttaactcaacaatgccttcacccatggccctcaaacttgacttgtaggttggacctgaccaatagatgacccctattgattttaggggtcaaaggtcaatgtcacagtgaccgtgaatgcgaaaacttgtttgatttgtaactcaacaatgcctgcacccatgcctttcacacttgacctggaggttgggcctgaccaatagatgccccctatttattttaggggtcattgggccaaagatcaatgtcacagtgaccttgaatgatcaatggataactcaacaatgccttcacccatggccctcaaacttgacttggaggttggacctgaccaatagatgacccctattgattttaggggtcaaaggtcaatgtcacagtgaccgtgaatgcgaaaacttgtttgagttataactcgacaatgcctacacccatgaccctcacacttgacctggagtttaggcctgaccaattgatgacccctattgattttaggggtcatcaggccaatggtcaaggtcacagtgaccttgaatgataaaaggttgtccaagttataactcaacaatgcctgcacccatggccctcaaacttgactttgaggttgggcctgaccagtagatgacccctattgattttaggtgtcattgggtcaaagtcacagtgaccttgaatgataaaaggttgtctgactgataactcaacaatgcctacacccatggccctcaaacttgacttggaggttggacctaaccagtaggagacccctattgattttaagggtcagctgatgactcctattgattgtagggctcattgggtcaaaggtcaaggtcacagtgtcctttaatgataaaataattttaaagcttgtccgaataataactccacaatgcctagacctatggtcatcaaactggatatgaatgatgggcctgaccagtatatgacccctattgttttggggggtcattgggccaaaggtcaaggtcacagtgactttgattggttaaaggttgtccaagtgataactcgacaatgcctgcaccaatggccctcaaacttgacttggaggttgggcctgaccagtagatgacccctattgattttaggggtcattggtccaaaggtcaaggtcacagtgaccttgaatgataaaaggttgtcctactgataactcagcaatgccttcacccatggccctcaaacttgacttggaggttggacctgaccaatagatgacccgtattgattttaggggtcaaaagtcaatgtcacagtgacagtgaatgtgaaattgtttgagttgtaactcgacaatgcctgcacccatggccatcacacttgacctgaaagttgggcctgaccaatagatgacccataatgattttcggggtcattgggcctaaggtcaggacggtcacagtaaccttgaatgataaaagcttgtctgattaataactcgacaatgcctgcacccattggccctcaaacttgacttggaggttgaacctgatcaatagataacccctattgatttcaagggtcaaaggtcaatgtcacagtgaccgtgaattcaaaaacttgtttgatttgtaactcaacaatgcctgcacccatgcccctcacacttgacgtggaagttgggcctgaccaatagatgacccctattgatttaaggggtcaaaggtcaatatcacagtaaccgtgaatgcaaaaacttgtttgaattattactcgacaatgcctgcacccatggccctcacacttgacgtggaagttgggcctgaccaatagatgacccctattgatttaaggggtcatcaggccaaaggtcaaggtaacagtgaccttgaatgataaaaggttgtcctactgataacgcaacaatgcctgcacccatagccctcaaacttgacttaccgtttgtgtcttcctgtagatgacaccttatgattttaagggtcaaaggtcaaggtcacggtgacctttgaatgataaaaggttgtcctaccgataactcaacaatgcctgcacccatagacctcaaacttgacttggagtttgcgtcgacctgtagatgacaccttatgattttacgggtcaaaggtcaaggtcagagtgaccttgaatgaaaaaagcttttgtgtgattaacttgacaatacctgcacctatagccctcaaacttgacattcaggtttttggtgaccagctgatgactttaaggggtcatcaggccaaaggtcaaggtcacagtgaccttgaatgataaaaggttatccaagagataactgaacaatgcctgcacccatggccctcaaacttgacttggaggttgggcctgaccagtagatgacccctattgattttaggggtcattggtccaaaggtcaaggtcacagtgaccttgaatgataaaaggttgtcctactgataactcggcaatgccttcacccatggccctcaaacttgacttggaggttggacctgaccaatagatgacccgtattgattttaggggtcaaaagtcaatgtcacagtgacagtgaatgtgaaattgtttgagttgtaactcgacaatgcctgcacccatggccatcacacttgacctgaaagttgggcctgaccaatagatgacacctatggatttaaggggtcattgggccaaagttcagggtcacagtgaccttgaatgttaaaagcttgtctgactgataactcaaccatgcctgcacccatggccctcaaacttgacttggaggttggacctgaccaatagatgacccctattgattttaagggtcaaaggtcaatgtcacagtgaccctcagtgcaaaaacttgtttgagttttaactcgacaatgcctacacccatgaccctcacacttgacctggagtttgggcctgaccaattgatgacccctattgatttcaggggtcatcgggccaaaggtcaaggtcacagtgaccttgaatgataaaagtttgtccaagagataactcaacaatgcctgcacccatggccctcaaacttgacttggaggttggacctgaccaaaagatgacccctattgattttaggggtcacagtgaccgtgaatgtgaatttttgttttgatttataactcgacaatgcctgcacccatgcccctcacacttaacctggagtttgggcctgaccaatagatgacccctatttatttaaggggtcttcgggccaaaggtcaaggtcacagtgaccttgaatgataaaagcttgtctgactgataacgacaatgcctgcacccatggccctcaaacttgacttggaggttggacctgaccaatagatgacccctattgattttaagggtcaaaggtcaatgtcacagtgaccgtgaatgcaaaaacttgtttgatttgtaactcaacaatgcctgcacccatgcccctcacacttgacgtggaagttgggcctgaccaatagatgacccctattgattttaggggtcatcggtcacagtgacagtgaatgtgaaaatttgtttagagttgtaactggacaatgcctacacccatgcccctcacacttgacctggagtttgggcctgaccaatagatgacccctatttattttaggggtcatcgggccaaaggtcaaggtcacagtgaccttgaatgataaaaggtatcatacctactgataactcaacaatgccttcacccatggccctcaaacttgacctggagttagggcctgaccaattgatgacccctattgatttgaggggtcatcgggccaaaggtcaaggtcacagtgaccttgaatgataaaaggatgtctaagtgataactcaacaatgcctgcacccatggccctcaaacttgacttggaggttggacctgactagtagaatgatgacccctattgattttaggggtcattggtccaaaggtcaaggtcacagtgaccttgaatgataaaaggttgtcctactggtaactcagcaatgccttcacccatggccctcaaacttgactttgaggttggactttaccaatatatgacccctattgattttaggggtcaaggtcacagtgaccgtgaatgccaaaattttttttgcgatttaactcgacaatgcctgcacccatggccctcaaacttgacttggagtttgcgtctgacctttagatgacaccttatgattttatgggtcaaaggtcaaggtcacagtgaccttgaacgaaaaaagcttgtttgtgtgataacttgacaatgcccatggccctcaaacttgacattcaggtttttggtgaccagctgatgactcctatggatattatcattgagtcaaaggtcatggtcataacacactcttgcctttgaatgttcataaaatcttaaaacagcctcaacggcattcaatgtctgtgactaatcagctgtcatttcggtcaattgtccatataattctgacaacatggcgctcagggggggggggcataatgtttgacgaacatctcttattatcatcgttttggtattactattatatctgcctttaaaaaataataaaccaaatcattttaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]