2024-04-27 05:00:50, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_048948309 4351 bp mRNA linear VRT 07-JUL-2022 DEFINITION PREDICTED: Lagopus muta NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X4, mRNA. ACCESSION XM_048948309 VERSION XM_048948309.1 DBLINK BioProject: PRJNA853367 KEYWORDS RefSeq. SOURCE Lagopus muta (rock ptarmigan) ORGANISM Lagopus muta Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Lagopus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_064438) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: Lagopus muta Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4351 /organism="Lagopus muta" /mol_type="mRNA" /isolate="bLagMut1" /db_xref="taxon:64668" /chromosome="6" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="Iceland: Husavik, NE" /lat_lon="66.088900 N 17.264700 W" /collected_by="Kristinn P. Magnusson" gene 1..4351 /gene="NRDE2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:125694718" CDS 107..3739 /gene="NRDE2" /codon_start=1 /product="nuclear exosome regulator NRDE2 isoform X4" /protein_id="XP_048804266.1" /db_xref="GeneID:125694718" /translation="
MALFPAFAGAPEPGEAPAGSSEGSRKGKVTGNSLPPSSAPRPGPAEPFRLSRELPAPCRFARPRSGRPAVLLLGPVRELDWLSNPSFSTEDALLLHQRTAEAANLTPEKSPLRRNTSRSDLSGESDTDESLKKPTKKRKKKKKKHHHSKTKKKAKGDSSSSESDLDTKHVKDKAATNLDDKTSNLTSNRFVWLDDVQAFTAETFRIDKKSDPANWAYKSLYRGDIARYKRRGESCLGIDAKKQCISWDSTASEKKQLQRRPERYFSKNNVKSLNTDGIPVCNKSSPSDPAAFIPVFHVEASDPSDTTEVNPLGIYDPSTTEWLQGKGYKGEEHEPVNTQQAFQEPGINVNPILMTKVEEHNKKVRENPRDIQAWMNFVSFQDELMRGPSPYASTGEQEVRRKSLKLILEKKLAILERAIESNPSNVDLKLARLNVCTEFWESPAVIKEWQKLIFIHPNNPELWKKYLLFCQSQFSTFSVSKINSLYGKCLTTLAAVQDGSMVSHPPLPGTEEAMLAIFIQQCHFLRQAGHSEKAVSLFQALIDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRIGEKGARGWRAWMHQQEKGGWVALDNPDDDDEEEIDEDEEIKDKTLPKWHIWMDIEYSRESRHWLPWRPDKTKNQAEEDCEDPERQVLFDDLGPSLIQLSNPDIQHQLVYSFLQFLGVPCISKLFPPNLYVAMDENNVFDNVLSDEKPLTSIDTPLSGFSSIGHMDTMLRRRHHIGHCKDGEEFIQNVFHVLSPLFSGKEKSNLSICWLQYEISKVVQCIQTKKKKKLKAQGRKSKKLAKNLLKAPDNRNNLALWKLYAYLEWLLGNTDDARKVFDTALCTAGTGGLKSPQLCSLSLLYAQLEVELLQSLEGAVTSRAVHVLTKLTESGPYVPYNGQVLSVGVLKARKTYEHALQDSFNKAPVSEQDRASNSNQLVNLVGCYTVFQYLTVGIDAAELVCAQALEKLEASHVQKCENTAETSSIQHFPTALEAVTLLRANLLRFHMKISAYPLSPLREALTEALKQFPSNQALWRAYIQSQKKSHSASKARRFFDGVTRSANSLEPWLFAIQAEQMRKKLTENVQRADVGEIYTTIPETGLTNRIISLFEHAIQSENGTHCPLLWRMYLNFLVSVGKKEKSKGLFYKAIQSCPWAKVLYMDAVEYFPEQLQETLDLMTEKELRVRVPMEELDLLLEV"
misc_feature 713..991 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(713..739,746..751,761..766,770..772,776..820, 827..835,839..847,869..877,887..892,896..901,908..928, 947..958,968..991) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1181..2179 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" polyA_site 4351 /gene="NRDE2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
tggggcaggcggactacacctcccagcatgcccggcgccgcagcgccatcttgctccgtcgctccgcggggcacttcgggcaggtactgctggcgagagctgggacatggccttgttcccggctttcgccggtgccccagagcccggggaggccccagccggcagcagcgagggctccaggaaaggtaaagtcacggggaattctcttcctcccagtagcgctccgcggcccggccctgctgagcccttccgcttgtctagggagcttcctgcgccgtgccggttcgcgcggccccgctccggccggcccgctgtgctactgctgggtcctgtgcgcgaactggactggcttagtaacccaagcttctctacggaagatgccctgttactgcatcagcgcactgcagaagctgcaaatctcacccctgaaaaatcaccactaagaaggaatacttcaagatcagatttatcaggggaaagtgatacagatgagagtctgaaaaagccaactaagaaaaggaaaaagaaaaagaaaaagcatcaccactctaagacaaaaaagaaagccaagggggactccagtagcagcgaatcagacctggacacgaagcacgtcaaggacaaagctgctacaaatctagatgataaaacatcaaatcttaccagcaaccgctttgtttggctggatgatgtccaggctttcacagcagaaactttcagaatagacaaaaaatcagaccctgcaaactgggcctacaaatccctgtatcgaggggacattgcaagatacaaaaggagaggagagtcctgtcttggcatagatgcaaagaaacagtgtatatcttgggacagcacagcatcagagaagaagcaattgcagaggcgacctgagcgctacttctcaaagaacaatgtgaagagcctgaacacagatgggattcctgtttgcaataaaagttctccatctgacccagctgcatttataccagttttccacgtggaagccagcgatccttctgacacaacagaagtaaatcctcttgggatttatgatccatcaactacagagtggctacaaggaaaagggtacaaaggtgaagaacatgagcctgtaaacacgcagcaggcgtttcaagagcctgggataaatgttaaccccattctaatgacaaaagtggaagaacataataagaaagtcagagaaaacccaagagatattcaggcttggatgaattttgtttcatttcaggatgaattaatgagaggacctagcccttatgccagtacgggagagcaggaagtaagaagaaaatcactgaagttaatcttggagaagaaactagctattttagagagggcaattgaaagcaatccaagtaacgttgatctgaaactcgccaggctgaatgtttgcacggaattctgggaatcaccagctgtgatcaaagaatggcagaaactaattttcatacatcccaataatccagagctgtggaagaaatatctcctgttctgccaaagtcaattcagtaccttttctgtttctaaaatcaatagcctctatggaaaatgtttgactaccttggcagctgtacaggatggcagcatggtatcacatcctccactgcctggcacagaagaagccatgcttgctatctttattcagcagtgccactttctgagacaagctggccattcggagaaggctgtgtctttgtttcaggctctgattgacttcaccttctttaaacctgacagcgtaaaagatctgccaacaaagggacaggtggaattctttgaacccttttgggatagtggagaaccacgaattggagaaaaaggagcaagaggctggagagcatggatgcaccaacaagaaaagggtggctgggttgctcttgacaatcctgacgatgatgatgaagaagaaatagatgaggatgaagaaataaaggataaaactctccccaagtggcacatttggatggatattgaatattctcgtgaatcaagacattggttaccttggaggccagacaaaaccaaaaatcaagcagaagaagactgtgaagatccagaaagacaggtattatttgatgatcttgggccatctttaatccagctttctaatccggacattcagcatcaattagtgtattcatttttgcaattcctgggagttccatgtataagtaagctctttcctcccaacctctatgttgccatggatgaaaataatgtctttgacaacgtgctttctgatgaaaagccactgacttctattgatacgccgctttctggattcagcagtattggtcatatggacacgatgctaaggaggagacatcacataggccactgtaaagatggagaggagttcatacagaatgtttttcacgttctatctccattgttttcaggaaaggaaaaatcaaacctgtccatttgttggttacagtatgaaatatcgaaggtagttcagtgtatccaaacaaaaaagaagaagaagctgaaagctcaagggaggaaaagtaaaaaattggccaagaatctccttaaagcacctgacaacagaaataacctcgctctctggaaactctacgcctacctggagtggctgcttggtaacactgacgatgctaggaaggtgtttgacacagccctctgcacagcagggacgggaggactgaagagtccccagctgtgcagcctcagtctgctttatgcccagctggaagtggagctactgcaaagcctagaaggagctgttacgtcacgtgctgttcatgtgttgaccaaactgactgaaagcggaccatacgtgccctacaatggacaagtgctgtctgttggtgtcttgaaagctcgtaagacgtacgagcatgcactgcaagattctttcaataaggcaccggtttctgagcaggatcgggccagtaattctaatcaactggttaacttagttggctgttacacagtgttccagtatttgactgttggaattgatgctgcagaattagtgtgtgcgcaggctttggaaaagcttgaagcttctcatgtacagaaatgtgaaaatactgcagagacttccagcattcagcattttcccactgctcttgaggctgtcacactgctgcgtgcaaatttactcagattccacatgaaaattagtgcttatcctttgagtcctttgcgagaagcactaacagaggccctcaaacagtttcctagcaaccaggctctatggagagcatacatccagagccagaagaagtctcacagtgctagcaaggcacggaggttttttgatggtgtcacaaggtctgctaactctttagagccgtggctgtttgccatccaagcagagcagatgagaaaaaaacttactgagaatgtccagagggcagatgttggtgaaatatataccactattcctgaaactgggttaacaaataggattatatctctatttgaacacgcgattcagagtgaaaatggcacccactgtcccttgctgtggagaatgtatttgaactttctggtttcagttggaaaaaaagaaaagagtaaaggattgttttataaagccattcaaagctgtccttgggcaaaggtactctacatggacgcagtggaatacttccctgagcagctgcaggagacgcttgatctcatgactgaaaaagaattaagagtgcgggtacctatggaagagctggatctactattagaggtttaagagaagataaggatgaagaaaatacaaagccagttctaaagctaacacttagaactcttttcaaacaagaactctgttgtgacttgagtattgtctacttccccccaagcttttgtacaaattactaccaaaatggatttctagctgcaatcattccgggatcaagaactgtacttagcccacaaaaatgcatccattcactgaagtagcgctgacttccacaggattctctcttacaaaccctcttacaaacacagtcctgttgtacaccgctcacatttcttattccattgactgaagttacattccctagagttcagcagagattccatacgcgctaactacaccttgtgagccacgcaggaaataaacatctgccccacaggtaccccactcttccagttggcagacctcagtaatttcctccagtttggtacgcacgtgtatttaagtaccaagtcacagcaagttacatctgttcatgaacagttggtaaaagccaaatcttatcttcgacagacacctgttaatggacttgtatcagaatgttttgacaaatggcttttgatatgaatatttatgaaatacataccttaatttttataattcaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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