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2024-03-29 20:07:55, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_048266067            2025 bp    mRNA    linear   VRT 15-MAY-2022
DEFINITION  PREDICTED: Alosa alosa vimentin (vim), mRNA.
ACCESSION   XM_048266067
VERSION     XM_048266067.1
DBLINK      BioProject: PRJNA834759
KEYWORDS    RefSeq.
SOURCE      Alosa alosa (allis shad)
  ORGANISM  Alosa alosa
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes;
            Clupeoidei; Clupeidae; Alosa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_063204) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Alosa alosa Annotation Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2025
                     /organism="Alosa alosa"
                     /mol_type="mRNA"
                     /isolate="M-15738"
                     /db_xref="taxon:278164"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /ecotype="Scorff River"
                     /country="France:Pont-Scorff, Scorff River"
                     /collection_date="18-Apr-2017"
                     /collected_by="Yann Guiguen, INRAE LPGP, 35000 Rennes,
                     France"
     gene            1..2025
                     /gene="vim"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 137 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 12 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:125309269"
     CDS             176..1549
                     /gene="vim"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_048122024.1"
                     /db_xref="GeneID:125309269"
                     /translation="
MSRSTVQSSYNRMFGRTEQRPSMTRSTYSSRQYSSPVRSSRTSYSVSSAPPSIFASKTSRLRSSAMIKLSSDNVDFALSDAITADFKANRTNEKAEMQHLNDRFASYIDKVRFLEQQNKILIAELDQLRGKGMSRVGDLYEEEMRELRRQVDQLTNEKSRVELDRDNLGDDIQKLREKLQDEMLQREDAENNLQGFRQDVDNAALARLDLERKVESLQEEIIFLKKLHDEEMCDLQAQIQQQHVQIDMDVAKPDLTAALRDVRLQYESLATKNLQESEDWYKSKFADLSEAAARNTDAIRQAKQEANDYRRQVQALTCEVDALKGMNESLERQMRETEDCFSNEAAGYQDNIVRLEEDIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITTPLPNFSSFNLRESMMEVHGRPMMDTMHKKVLIKTIETRDGEVINESTQNHDDLE"
     misc_feature    188..448
                     /gene="vim"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    449..1375
                     /gene="vim"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
ORIGIN      
agtcactctctctgcaccgttatgttatttgcatagggaggggagtataaatccgctctcacactcagcatcagtgttgctggggcagtagttgatttgtgcgcacggaaagctggtaggagggaagtatacgcgataaaaaagagaagtaactcaagcactgaaggattacaaaatgtcaagatccacggtccagtcctcttacaataggatgttcggtaggaccgagcagcggccctccatgactcgttctacttactcaagtcgccagtactccagtccagtacgctcttcccggacatcctacagcgtgtcgtccgctccccctagcatctttgccagcaagaccagcaggctccgcagcagtgccatgatcaaactcagcagcgataatgtggactttgctctctccgatgccatcacagcggacttcaaagcgaaccggactaatgaaaaggcagagatgcagcacctcaacgacaggtttgccagctacatcgataaagttcggttcttggagcagcagaacaaaattctcatcgcagagttggatcagcttaggggcaaaggtatgtcccgcgtcggggacctgtatgaggaggagatgagggagctgcgccgtcaggtggaccagcttaccaacgagaaatccagagtcgagttggaccgggacaacttgggagatgacatccagaagcttcgtgagaagctgcaggatgagatgcttcagagagaagatgctgaaaacaacctccaaggcttcagacaggatgtggataatgcggccctggcccgtcttgacctggagaggaaggtggagtccctgcaagaggagatcatcttcctgaagaagcttcatgatgaggagatgtgtgaccttcaggctcaaatccagcagcagcatgttcagattgatatggatgtggccaaacccgacctgaccgctgcgctgcgggacgtcagactgcagtacgagtcactggctaccaagaacctccaggagtccgaggactggtacaaatccaaatttgcggacctgtctgaagcagctgctcgtaatactgatgccatccgtcaggctaagcaggaagccaatgactatcgccgacaggtgcaggctctcacttgtgaggtcgatgccctgaaaggcatgaatgagtcactggaacgacagatgagggagacagaggactgcttctccaacgaggcggctggttaccaggacaacattgtccgcctggaggaagacatccgtaacatgaaggatgagatggcacgccacctgcgcgagtaccaggatctgcttaatgtcaaaatggcgctggacattgagatcgccacttacagaaaactgctggagggtgaagagagcagaatcaccactccattgcccaacttctcttcttttaacttgagagaatccatgatggaagtccatggaagaccaatgatggacaccatgcataagaaggtgctgattaagactattgagaccagagatggagaagtgatcaatgagtcaacccagaaccacgatgacctggaatgagccgcatgtgtcacctgtgatgaagaggaggatggagagtctgaatagggttggggaggggggtgcatgaggaggcagaaactgagggaaaatagagggatcaaggaacgtcaatacatatgttgttcatgtgaaactttcacttaaaagtcaacaaaaaaagacaaaaaataagaaaaaaacagctttaaaagtgccttttttgacacgctagaaagattggaccagtgttttgttagggtagagcaaagtaggcactctagagcagcaaaccaagcagctttactgaatgttcttgtttaccacgcagtctctagtttaccctccacgagttaaggccacagcaatacttttgagaaacagtttgtttttttactgttaccatttaccaaaattctaaatgaatgaaacaaatgttttgtgtgcacaccacgactgtctgtgcttctaccagtcaataaacttttgaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]