2024-04-23 15:42:37, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_048230893 1722 bp mRNA linear VRT 15-MAY-2022 DEFINITION PREDICTED: Alosa alosa vimentin-related 2 (vimr2), mRNA. ACCESSION XM_048230893 VERSION XM_048230893.1 DBLINK BioProject: PRJNA834759 KEYWORDS RefSeq. SOURCE Alosa alosa (allis shad) ORGANISM Alosa alosa Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Alosa. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_063209) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Alosa alosa Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1722 /organism="Alosa alosa" /mol_type="mRNA" /isolate="M-15738" /db_xref="taxon:278164" /chromosome="21" /sex="male" /tissue_type="blood" /dev_stage="adult" /ecotype="Scorff River" /country="France:Pont-Scorff, Scorff River" /collection_date="18-Apr-2017" /collected_by="Yann Guiguen, INRAE LPGP, 35000 Rennes, France" gene 1..1722 /gene="vimr2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:125286129" CDS 28..1203 /gene="vimr2" /codon_start=1 /product="peripherin" /protein_id="XP_048086850.1" /db_xref="GeneID:125286129" /translation="
MMAVRVSSYRRLFEEQQQWNGAGAGAGQVLSSARGGANGCPWPEPDFAAARALNKESVIRFAKERSLIAALNDRLAVLVDVARCLEEENESLEVQILELKERMGVEGEESTAITTRGPADYSLEAVVERLRHEKEEILRDTEDLKKELACLQAEYDQAVERRSLIQLEKEDVAVDVDDITADCLALREQVAIYEEQLANMEQQHEERLEILTEPAKGAPGEDAVVSLEFPDLDITPAIMDIKEYYSQLAESLQFECGPRAAITAGGEGGNGNGATGAKAAGARVKDVSKVTDVDALKALIAELQNELAELERQNEGLEAEIEARKEAYLQEIEDMENCVADLKDSQADLEAQMREHCSDYEELLSQKMALDIEIAAYRGLVEEEEERLFCL"
misc_feature 217..1188 /gene="vimr2" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" ORIGIN
cgaaacgcctgcctcccttactggactatgatggccgtcagggtgtcctcgtaccgccggctctttgaggagcagcagcagtggaatggagctggagcaggggccggacaagtcctctcctccgccaggggcggagccaacggctgcccgtggcccgagccggactttgcggcggcacgtgcgctgaacaaagagagcgtgatccgcttcgccaaggagcgctccctcatcgcagccctcaatgaccgcctggccgtcctcgtcgacgtggcgcggtgtctggaggaggagaatgagtccctggaggtgcagatcctggagctgaaggagcgaatgggagtggagggggaggagtcgaccgccatcaccacccggggccctgcggactacagcctggaggccgtggtggagaggctgcgccacgagaaggaggagattctgcgtgacacagaggacctgaagaaggagctggcatgtctgcaggctgagtatgaccaggcggtggagcggcgctctctcatccagctggagaaggaggatgttgccgtggatgttgatgacatcacagccgactgcctggcactgagggagcaagttgccatctacgaggagcagctggccaatatggagcagcagcacgaggagaggctggagattctgactgagccagcaaaaggagcgcctggtgaagatgccgtcgtctccttggaattcccagacctcgacatcactcctgctatcatggatatcaaggagtactacagtcagctggcagagagcctgcagtttgagtgcggcccgagagcggccatcactgcgggaggagaaggaggaaatggaaacggggccaccggggccaaagcagcaggggctagagtgaaagacgtctccaaggtgacggacgtggatgccctcaaggcactgattgctgagctgcagaatgagcttgccgaactggagaggcagaacgaggggctggaggccgagatcgaggccaggaaagaggcttacctgcaggagatcgaagacatggagaactgcgtggccgacctgaaggactctcaggctgaccttgaggcccagatgagggagcactgcagtgactacgaggagctcctgagccaaaagatggccctggacattgagattgctgcctacaggggcctggtggaggaggaagaggagcgcttgttctgcctgtaaagggacgccggagcgagggatgagcgaggtcctgatggaggagaggggaccgaggggaggaagtgacagaaggagggaggaaaacatacacacacacacacacacacacacacacacacacactctctctctctctctctctctctctcccatgcgatgcagactaagtggggaaaaaaatggacatcaataaaaaaggcagacatattgcagccattaagatgaaccttagtagaacaaagcccaccaacacacacacacacacacacacacacacgtacacgtatacacacacgcaatcttttggccagatgtagaagcgtcttgacagataaatggcatcgggaagccccacactgggccattgataacaggtcactgtcaggtgaccccatgccctgagagaagactctgattgtgctgtacgtgggtgggaatgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgt
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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