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2024-03-29 20:17:28, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_046394023            2297 bp    mRNA    linear   VRT 03-FEB-2022
DEFINITION  PREDICTED: Scatophagus argus early endosome antigen 1-like
            (LOC124061789), mRNA.
ACCESSION   XM_046394023
VERSION     XM_046394023.1
DBLINK      BioProject: PRJNA776026
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Scatophagus argus
  ORGANISM  Scatophagus argus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Eupercaria; Scatophagidae; Scatophagus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_058499.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Scatophagus argus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 23% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2297
                     /organism="Scatophagus argus"
                     /mol_type="mRNA"
                     /isolate="fScaArg1"
                     /db_xref="taxon:75038"
                     /chromosome="7"
                     /tissue_type="muscle"
                     /dev_stage="adult"
                     /country="Singapore"
                     /lat_lon="1.3521 N 103.8198 E"
                     /collection_date="2018-08-06"
                     /collected_by="Byrappa Venkatesh"
     gene            1..2297
                     /gene="LOC124061789"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 long SRA reads, 2 Proteins, and
                     82% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:124061789"
     CDS             624..2297
                     /gene="LOC124061789"
                     /codon_start=1
                     /product="early endosome antigen 1-like"
                     /protein_id="XP_046249979.1"
                     /db_xref="GeneID:124061789"
                     /translation="
MTAELVWLKSLSEKQQTVNENLKTAVNELQKNEKTLNDSLAAEKVQIKSLREKHHTEVQHLREALQSHQDNEKILMRQINSLTAEVAQLKCLNEADQAEIQKLSTTVCDLENWAEKAQQDRRDKDELIEIATALVSLNETTQTENKHLLASVHDLQERETIINKTQESLTAEVAQLKCLNEQDRRDKDELIEIATALVSLNETTQTENKHLLASVHDLQERETIINKTQESLTAEVAQLKCLNEQDRRDKDELIEIATALVSLNETTQTENKHLLASVHDLQERETIINKTQESLTAEVAQLKCLNEQDRRDKDELIEIATALVSLNETTQTENKHLLASVHDLQERETILNKTQESLTAEVAQLKCLNATNQAEIKSLKAEAHESQTLEEMLNNENKIMAGELAQQEFLTERLNNENKDLRTALQGLQDQLQEAMQLICDKDELITKQASEIAFKQQMVEELNMKKTIHDPKEMMQEEEILADVEDFRDEHRILAEDTEQPDSPEDQRPENVLETEHEEQRNASLLETTCEEKKNYNLPEHRDDSLQRIHPQSLQY"
     misc_feature    744..>1829
                     /gene="LOC124061789"
                     /note="Chromosome segregation ATPase [Cell cycle control,
                     cell division, chromosome partitioning]; Region: Smc;
                     COG1196"
                     /db_xref="CDD:224117"
ORIGIN      
ggcgacccattttatcaatctaacaggacagcgcaatccgcaactgatttattagtgggcagtctatagtgaacaagatggaagtgatacctgagagagaggacctttttcaaggaattcatgaactggaaatgagctacagatctcatcattggaggttgaaggataaagtacaggaaggaaatgaactgttgggtgagaaaaccagactgcaggaatccttccagtcaaaaataatggcactccagttggagttgaatgattcgtgggacaaggagacacatcttactcaagaagttcaaactttaaagaaagagctcacaaaaaatcaagacattaaggtacaggtatcaagtgatctccatgccaagataatcagtctgcaggagttgtttcagtcagaggtaaaagcacttcatttgaaattaaaagatgcaagggatgaaaataccaggctgcgtgagttgtcagacaagttggtcagtgaaaatacagatattaaagaagaactggaccaggtctccaatcttctggtcaaggaagaaaatgtcagggaggaaaatgacacttccataagaaagctgaaagaggagaatttgggcttgagtgaaagaaataaaaaaatgactgctgaactggtctggcttaaaagtctgagtgagaaacaacagactgtaaatgaaaatctgaaaacagcagtgaatgagctacagaaaaatgagaaaaccctgaatgacagcctcgctgctgagaaggtccaaataaaatctctcagagagaaacaccacacagaggttcaacatctgagggaagcgctgcagagtcatcaggataacgagaagattctgatgaggcagattaacagtctcactgctgaggtggcccaactgaaatgtctgaatgaagcagaccaagcagagattcaaaagttgagtaccacagtgtgtgaccttgagaactgggcagagaaggctcaacaagaccgcagggataaagatgagttaatagagatagcaactgcacttgtaagcctgaacgaaacaacgcagacagagaacaaacacctcttggcatcagtgcatgatctgcaggagagggaaacaataataaataagactcaggagagtctgactgctgaggtggcccaactgaaatgtttgaatgaacaagatcgcagggataaagatgagttaatagagatagcaactgcacttgtaagcctgaacgaaacaacgcagacagagaacaaacacctcttggcatcagtgcatgatctgcaggagagggaaacaataataaataagactcaggagagtctgactgctgaggtggcccaactgaaatgtttgaatgaacaagaccgcagggataaagatgagttaatagagatagcaactgcacttgtaagcctgaacgaaacaacgcagacagagaacaaacacctcttggcatcagtgcatgatctgcaggagagggaaacaataataaataagactcaggagagtctgactgctgaggtggcccaactgaaatgtttgaatgaacaagatcgcagggataaagatgagttaatagagatagcaactgcacttgtaagcctgaacgaaacaacgcagacagagaacaaacacctcttggcatcagtgcatgatctgcaggaaagggaaacaatattaaataagactcaggagagtctgactgctgaggtggcccaactgaaatgtttgaacgccacaaaccaagcagaaattaaaagtctgaaggcagaagcacatgaaagtcagacactggaagagatgcttaacaatgagaataagatcatggccggtgagttggctcaacaggagtttctgacagagagactaaacaacgaaaacaaagacctcaggactgctttgcaaggtcttcaggaccaactgcaggaggctatgcaactaatctgtgacaaagatgagctaataacaaagcaagcctctgaaattgcatttaagcagcaaatggtagaggagctgaacatgaaaaagacaatccatgacccaaaagagatgatgcaggaggaggaaatattagctgatgttgaagatttcagagatgaacataggatcttggctgaagatacagaacaaccagactcaccagaggatcaaagacctgaaaacgtcctggagactgagcacgaggagcagagaaatgcgagtctcctggagactacatgtgaggagaagaaaaattacaacctcccagagcacagagatgacagcctccaaagaatccacccacagagcctccagtactga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]