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2024-03-29 18:26:48, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_046168443            3522 bp    mRNA    linear   PLN 28-JAN-2022
DEFINITION  Alternaria rosae putative RNA interference and gene silencing
            protein (BKA58DRAFT_346867), mRNA.
ACCESSION   XM_046168443
VERSION     XM_046168443.1
DBLINK      BioProject: PRJNA801206
            BioSample: SAMN05878025
KEYWORDS    RefSeq.
SOURCE      Alternaria rosae
  ORGANISM  Alternaria rosae
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae;
            Pleosporaceae; Alternaria; Alternaria sect. Pseudoalternaria.
REFERENCE   1  (bases 1 to 3522)
  AUTHORS   Mesny,F., Miyauchi,S., Thiergart,T., Pickel,B., Atanasova,L.,
            Karlsson,M., Huettel,B., Barry,K.W., Haridas,S., Chen,C., Bauer,D.,
            Andreopoulos,W., Pangilinan,J., LaButti,K., Riley,R., Lipzen,A.,
            Clum,A., Drula,E., Henrissat,B., Kohler,A., Grigoriev,I.V.,
            Martin,F.M. and Hacquard,S.
  TITLE     Genetic determinants of endophytism in the Arabidopsis root
            mycobiome
  JOURNAL   Nat Commun (2021) In press
REFERENCE   2  (bases 1 to 3522)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JAN-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3522)
  AUTHORS   Haridas,S., Mesny,F., Miyauchi,S., Thiergart,T., Pickel,B.,
            Atanasova,L., Karlsson,M., Huttel,B., Barry,K.W., Chen,C.,
            Bauer,D., Andreopoulos,W., Pangilinan,J., LaButti,K., Riley,R.,
            Lipzen,A., Henrissat,B., Kohler,A., Grigoriev,I.V., Martin,F.M. and
            Hacquard,S.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAR-2021) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_025763580).
            
            ##Metadata-START##
            Organism Display Name :: Alternaria rosae MPI-PUGE-AT-0040
            GOLD Stamp ID         :: Gp0141910
            ##Metadata-END##
FEATURES             Location/Qualifiers
     source          1..3522
                     /organism="Alternaria rosae"
                     /mol_type="mRNA"
                     /strain="MPI-PUGE-AT-0040"
                     /db_xref="taxon:1187941"
                     /chromosome="Unknown"
                     /country="Germany:Pulheim"
     gene            1..3522
                     /locus_tag="BKA58DRAFT_346867"
                     /db_xref="GeneID:70198189"
     CDS             185..3286
                     /locus_tag="BKA58DRAFT_346867"
                     /codon_start=1
                     /product="putative RNA interference and gene silencing
                     protein"
                     /protein_id="XP_046020769.1"
                     /db_xref="GeneID:70198189"
                     /db_xref="InterPro:IPR003100"
                     /db_xref="InterPro:IPR003165"
                     /db_xref="InterPro:IPR014811"
                     /db_xref="JGIDB:Altro1_346867"
                     /translation="
MSNAPRGGDRGRGGFRGDHGGGRGGGGRGDYRGGGFRGDRGGGFRGDRGGGRGGGRGGYGGPPRGGQQGIQIFPNTHPQDKNVAKVEDALHPVEKKGLDLSTLKLSEGNPTRPGYGTKGVEVELTANYVELLPPSNMVLYRYDVDVQPEATGRKRHRILELLLQSSEMVPHKGDVATDFRQTLVSKTKFKHDEDIVEIQYRTEGEDDPAANAIVYRIKIKYIRTYSIGELVDWMNSTNLSQSFGDKQELTQALNIFLNHYVKSSNNLATIGSSKSFSLNQNATRGDLGAGLEVIRGFFSSVRVATCRILVNINVSHGAFYHSGPLPGLMRSYGTRNTIALEKFLKLVRVQTTHLAEKRNKAKQVIPRIKTIFGLARKDDGHKLANRPRIKGHGAGAKDVEFWLDADAGSSDAPKAEAGAAKGKGKGKPQPKGPAPAGSGRYISVFDFFKTTYNRVLQQPELPVVNCGNRENPMYLPAEVCIVVPGQPSRTKLDSGQTQTMIQYAVRKPWENAKSILNEGVSTVGLDENTNVLLRSFGLTITPGLIKVPGRILACPRVIYKGDKTAPVDQNFGRWNMMNIKFNTGASLTKWSTVMISLPGKRDSFDRQALGAVMQEFYQGLLKIGIHAQPPLAPQPLQLKHPDDPSLGPFLQRAASSLNLLFIVLPEANIPLYKRIKTLADRDYGLHTICSVGSKLWKERGRDQYIANIALKCNLKLGGINQIVENKSLGIIDQNKTMVVGIDVTHPSPGSASNAPSVSAMVASVDKFLGQWPATLRIQRGRQENVDDLAEMLKSRLNLWRTKGKHPAFPENILIYRDGVSEGQYDMVLSQELPQLRKACEALYPATDTKKGLPRFTVVVCGKRHKTRFYPTAEKDCDGVGDKSSGNTKPGTVVDRGVTEARNWDFFLQAHAALQGTARPCHYYIVHDEIFRQIYAKQIPPQFCNIADIVEDLTHNMCYLFGRATKAVSLCPPAYYADLACERARCYLANLFDTPTASAAPSVAGTSVAGGASLDPSASDVQIHPRLKDTMFYI"
     misc_feature    710..955
                     /locus_tag="BKA58DRAFT_346867"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    995..1144
                     /locus_tag="BKA58DRAFT_346867"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    <1493..1633
                     /locus_tag="BKA58DRAFT_346867"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    1781..3145
                     /locus_tag="BKA58DRAFT_346867"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2198..2200,2210..2212,2246..2257,2264..2266,
                     2294..2296,2303..2305,2315..2317,2327..2329)
                     /locus_tag="BKA58DRAFT_346867"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2408..2410,2414..2416,2633..2635,3113..3115)
                     /locus_tag="BKA58DRAFT_346867"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
ctcagtcttgggggtcttgcgagcattcccatcggaacagtgtggctgtttcatacaaaagttgttatacagaaccttatcggatagaacctggctcacgagggcagcgaatcgcacagatcgcagagctcatcgcgcgtcacgccaaatctttagtccgaaagcctcactaagccattcaactatgtccaacgcacctcgaggcggtgatagaggaagaggtggatttcgcggagatcatggaggtggacgcggaggaggagggagaggcgactacagaggtggcggcttccgaggggatcgaggcggtgggtttcggggtgacagaggtggaggccgtggtggcggcagaggagggtatggcggaccgccccgcggtggccagcaaggcatccagatcttccccaacactcatccgcaagacaaaaacgtcgcaaaagttgaagatgctttgcatccagttgaaaagaaaggccttgatcttagcaccctgaagctatcagaaggaaatccaacgagacccggatatggcaccaaaggtgtcgaggtagagctcacagcgaactatgttgagctgctgccaccttcgaatatggtgttgtatcgctacgacgttgacgtccaaccggaagcgactggaaggaagcgtcaccgaatattggagctcttgcttcagtcatccgagatggttcctcacaaaggcgacgtcgcgactgatttccgtcaaactctcgtctccaagacgaaattcaagcacgatgaagatatcgtcgagattcagtaccgcaccgaaggcgaagatgacccagctgcaaacgccatcgtttacaggatcaagatcaagtatatcaggacgtacagcatcggtgagctagttgactggatgaactccaccaacctcagtcagtcatttggcgacaagcaagaactgacgcaggcactcaacatcttcctgaaccactacgtcaagtcgtcgaataaccttgcgacgattggctcatcgaagagcttctccctcaatcagaacgcaactcgaggagatctcggcgctggcctggaagttatccgtggcttcttctcgagcgtgcgcgttgcgacttgccgcatcttggtcaatatcaatgtcagtcacggagccttctatcattctggtcctctaccaggtctcatgcgcagctacggtacacgaaacactatcgctctggaaaagtttctcaagctggtccgcgtccaaacgactcatttggctgagaagcggaacaaagccaagcaggtcattcctcgcatcaagactatatttgggcttgctaggaaggatgacggtcataagctggctaacaggccacgcatcaagggccacggtgcaggcgccaaggacgttgagttctggcttgatgccgacgccggctcttccgatgcacccaaggcggaggcgggtgctgcaaagggcaagggcaaaggaaagccccagcctaagggcccagcgcctgctggatcgggaagatacatcagcgttttcgacttctttaagacgacatacaaccgggtcctccagcaacccgagctgccagtcgtcaactgcggcaatcgagaaaaccccatgtacctcccggcagaggtctgcattgttgttcccggccagccatccaggaccaagcttgatagtggccaaacacagactatgattcaatacgctgtacgcaagccgtgggagaacgcgaaatccattctcaacgagggtgtatcgaccgttggtctggatgagaacaccaacgttttgctgcgctctttcggtcttaccatcacaccgggtctgatcaaagtaccaggtcgaatcctcgcctgtccaagggtcatctacaaaggtgacaagactgctcctgtcgaccagaattttggccgttggaacatgatgaacatcaagttcaatactggcgcatccctaacgaaatggtctacagtcatgatatctcttccaggtaaacgcgactctttcgatcgccaagctctcggtgcggtgatgcaggagttctaccaaggcttgctcaagattggtatccatgcccagccgccccttgccccacaacctcttcaactcaaacatccagacgatccctctctcggcccgtttctacagagggcggctagttctttgaatctcctattcattgtgctaccagaggcaaacatccccttgtacaagcgcatcaagacactcgccgacagagactatggccttcacacgatctgttctgttggctctaagctctggaaggagcgtggtcgcgatcagtacattgcgaatatcgcattgaagtgcaatctaaagctcggtggcatcaaccagattgtcgaaaacaagagccttggcatcatcgatcaaaacaagacgatggtggttggtatcgatgtgacccacccttctccaggctcggcttccaacgctccttctgtatcggcgatggttgcttctgtcgacaaatttcttggacaatggcctgcgacgctgcggatccagcgcggaaggcaggaaaatgtcgacgatctcgctgaaatgttgaagtcgcgtctcaacctctggaggaccaagggcaagcaccccgcattccccgagaacattctcatttatcgcgacggagtatcagaaggacaatatgacatggtgctgtcacaggagcttccccagctgcgaaaggcatgcgaggcactgtatcccgcaactgacaccaagaagggtcttccacgcttcacggttgtcgtctgtggtaagcgacataagacacgcttctatccaacggcggagaaagattgcgatggcgtgggggacaagagctctggcaatacgaagcctggcaccgtcgtcgatcgcggcgtgacagaggcccgcaactgggatttcttccttcaagctcacgccgcactccaaggaacagcgcgtccttgccattactatatcgttcacgacgagatcttccgccagatctacgctaaacagatcccgccacagttctgcaacattgccgatatcgtggaagaccttacccataacatgtgttatctgttcggtcgtgcgacgaaggctgtaagtctgtgcccgccagcatactacgccgatctggcttgtgagcgggctcgttgctacttagcaaacctgttcgatacgccgacggcaagtgctgcgccttccgttgctggaacttccgtagctgggggtgcgtcgctggacccgagcgcgtcggatgttcagatccatcccaggctcaaggacactatgttctacatctaggcaatggcggcatgggtagtcacttacatacagctatcacccctggtacaagatgtagattgcaaagttaaaaaaggacgtctaggtgaggaagaacctacccggcattgagtggcaattcatcgctacaacatccatcgatatggcaacgtgtcggtgatccaagatcatactgttcattattactagatacacagctccataacagccaaatacactcattcatcagccccgac
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]