2024-03-29 18:26:48, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_046168443 3522 bp mRNA linear PLN 28-JAN-2022 DEFINITION Alternaria rosae putative RNA interference and gene silencing protein (BKA58DRAFT_346867), mRNA. ACCESSION XM_046168443 VERSION XM_046168443.1 DBLINK BioProject: PRJNA801206 BioSample: SAMN05878025 KEYWORDS RefSeq. SOURCE Alternaria rosae ORGANISM Alternaria rosae Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Pleosporaceae; Alternaria; Alternaria sect. Pseudoalternaria. REFERENCE 1 (bases 1 to 3522) AUTHORS Mesny,F., Miyauchi,S., Thiergart,T., Pickel,B., Atanasova,L., Karlsson,M., Huettel,B., Barry,K.W., Haridas,S., Chen,C., Bauer,D., Andreopoulos,W., Pangilinan,J., LaButti,K., Riley,R., Lipzen,A., Clum,A., Drula,E., Henrissat,B., Kohler,A., Grigoriev,I.V., Martin,F.M. and Hacquard,S. TITLE Genetic determinants of endophytism in the Arabidopsis root mycobiome JOURNAL Nat Commun (2021) In press REFERENCE 2 (bases 1 to 3522) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (28-JAN-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3522) AUTHORS Haridas,S., Mesny,F., Miyauchi,S., Thiergart,T., Pickel,B., Atanasova,L., Karlsson,M., Huttel,B., Barry,K.W., Chen,C., Bauer,D., Andreopoulos,W., Pangilinan,J., LaButti,K., Riley,R., Lipzen,A., Henrissat,B., Kohler,A., Grigoriev,I.V., Martin,F.M. and Hacquard,S. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (30-MAR-2021) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_025763580). ##Metadata-START## Organism Display Name :: Alternaria rosae MPI-PUGE-AT-0040 GOLD Stamp ID :: Gp0141910 ##Metadata-END## FEATURES Location/Qualifiers source 1..3522 /organism="Alternaria rosae" /mol_type="mRNA" /strain="MPI-PUGE-AT-0040" /db_xref="taxon:1187941" /chromosome="Unknown" /country="Germany:Pulheim" gene 1..3522 /locus_tag="BKA58DRAFT_346867" /db_xref="GeneID:70198189" CDS 185..3286 /locus_tag="BKA58DRAFT_346867" /codon_start=1 /product="putative RNA interference and gene silencing protein" /protein_id="XP_046020769.1" /db_xref="GeneID:70198189" /db_xref="InterPro:IPR003100" /db_xref="InterPro:IPR003165" /db_xref="InterPro:IPR014811" /db_xref="JGIDB:Altro1_346867" /translation="
MSNAPRGGDRGRGGFRGDHGGGRGGGGRGDYRGGGFRGDRGGGFRGDRGGGRGGGRGGYGGPPRGGQQGIQIFPNTHPQDKNVAKVEDALHPVEKKGLDLSTLKLSEGNPTRPGYGTKGVEVELTANYVELLPPSNMVLYRYDVDVQPEATGRKRHRILELLLQSSEMVPHKGDVATDFRQTLVSKTKFKHDEDIVEIQYRTEGEDDPAANAIVYRIKIKYIRTYSIGELVDWMNSTNLSQSFGDKQELTQALNIFLNHYVKSSNNLATIGSSKSFSLNQNATRGDLGAGLEVIRGFFSSVRVATCRILVNINVSHGAFYHSGPLPGLMRSYGTRNTIALEKFLKLVRVQTTHLAEKRNKAKQVIPRIKTIFGLARKDDGHKLANRPRIKGHGAGAKDVEFWLDADAGSSDAPKAEAGAAKGKGKGKPQPKGPAPAGSGRYISVFDFFKTTYNRVLQQPELPVVNCGNRENPMYLPAEVCIVVPGQPSRTKLDSGQTQTMIQYAVRKPWENAKSILNEGVSTVGLDENTNVLLRSFGLTITPGLIKVPGRILACPRVIYKGDKTAPVDQNFGRWNMMNIKFNTGASLTKWSTVMISLPGKRDSFDRQALGAVMQEFYQGLLKIGIHAQPPLAPQPLQLKHPDDPSLGPFLQRAASSLNLLFIVLPEANIPLYKRIKTLADRDYGLHTICSVGSKLWKERGRDQYIANIALKCNLKLGGINQIVENKSLGIIDQNKTMVVGIDVTHPSPGSASNAPSVSAMVASVDKFLGQWPATLRIQRGRQENVDDLAEMLKSRLNLWRTKGKHPAFPENILIYRDGVSEGQYDMVLSQELPQLRKACEALYPATDTKKGLPRFTVVVCGKRHKTRFYPTAEKDCDGVGDKSSGNTKPGTVVDRGVTEARNWDFFLQAHAALQGTARPCHYYIVHDEIFRQIYAKQIPPQFCNIADIVEDLTHNMCYLFGRATKAVSLCPPAYYADLACERARCYLANLFDTPTASAAPSVAGTSVAGGASLDPSASDVQIHPRLKDTMFYI"
misc_feature 710..955 /locus_tag="BKA58DRAFT_346867" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 995..1144 /locus_tag="BKA58DRAFT_346867" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature <1493..1633 /locus_tag="BKA58DRAFT_346867" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature 1781..3145 /locus_tag="BKA58DRAFT_346867" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2198..2200,2210..2212,2246..2257,2264..2266, 2294..2296,2303..2305,2315..2317,2327..2329) /locus_tag="BKA58DRAFT_346867" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2408..2410,2414..2416,2633..2635,3113..3115) /locus_tag="BKA58DRAFT_346867" /note="active site" /db_xref="CDD:240015" ORIGIN
ctcagtcttgggggtcttgcgagcattcccatcggaacagtgtggctgtttcatacaaaagttgttatacagaaccttatcggatagaacctggctcacgagggcagcgaatcgcacagatcgcagagctcatcgcgcgtcacgccaaatctttagtccgaaagcctcactaagccattcaactatgtccaacgcacctcgaggcggtgatagaggaagaggtggatttcgcggagatcatggaggtggacgcggaggaggagggagaggcgactacagaggtggcggcttccgaggggatcgaggcggtgggtttcggggtgacagaggtggaggccgtggtggcggcagaggagggtatggcggaccgccccgcggtggccagcaaggcatccagatcttccccaacactcatccgcaagacaaaaacgtcgcaaaagttgaagatgctttgcatccagttgaaaagaaaggccttgatcttagcaccctgaagctatcagaaggaaatccaacgagacccggatatggcaccaaaggtgtcgaggtagagctcacagcgaactatgttgagctgctgccaccttcgaatatggtgttgtatcgctacgacgttgacgtccaaccggaagcgactggaaggaagcgtcaccgaatattggagctcttgcttcagtcatccgagatggttcctcacaaaggcgacgtcgcgactgatttccgtcaaactctcgtctccaagacgaaattcaagcacgatgaagatatcgtcgagattcagtaccgcaccgaaggcgaagatgacccagctgcaaacgccatcgtttacaggatcaagatcaagtatatcaggacgtacagcatcggtgagctagttgactggatgaactccaccaacctcagtcagtcatttggcgacaagcaagaactgacgcaggcactcaacatcttcctgaaccactacgtcaagtcgtcgaataaccttgcgacgattggctcatcgaagagcttctccctcaatcagaacgcaactcgaggagatctcggcgctggcctggaagttatccgtggcttcttctcgagcgtgcgcgttgcgacttgccgcatcttggtcaatatcaatgtcagtcacggagccttctatcattctggtcctctaccaggtctcatgcgcagctacggtacacgaaacactatcgctctggaaaagtttctcaagctggtccgcgtccaaacgactcatttggctgagaagcggaacaaagccaagcaggtcattcctcgcatcaagactatatttgggcttgctaggaaggatgacggtcataagctggctaacaggccacgcatcaagggccacggtgcaggcgccaaggacgttgagttctggcttgatgccgacgccggctcttccgatgcacccaaggcggaggcgggtgctgcaaagggcaagggcaaaggaaagccccagcctaagggcccagcgcctgctggatcgggaagatacatcagcgttttcgacttctttaagacgacatacaaccgggtcctccagcaacccgagctgccagtcgtcaactgcggcaatcgagaaaaccccatgtacctcccggcagaggtctgcattgttgttcccggccagccatccaggaccaagcttgatagtggccaaacacagactatgattcaatacgctgtacgcaagccgtgggagaacgcgaaatccattctcaacgagggtgtatcgaccgttggtctggatgagaacaccaacgttttgctgcgctctttcggtcttaccatcacaccgggtctgatcaaagtaccaggtcgaatcctcgcctgtccaagggtcatctacaaaggtgacaagactgctcctgtcgaccagaattttggccgttggaacatgatgaacatcaagttcaatactggcgcatccctaacgaaatggtctacagtcatgatatctcttccaggtaaacgcgactctttcgatcgccaagctctcggtgcggtgatgcaggagttctaccaaggcttgctcaagattggtatccatgcccagccgccccttgccccacaacctcttcaactcaaacatccagacgatccctctctcggcccgtttctacagagggcggctagttctttgaatctcctattcattgtgctaccagaggcaaacatccccttgtacaagcgcatcaagacactcgccgacagagactatggccttcacacgatctgttctgttggctctaagctctggaaggagcgtggtcgcgatcagtacattgcgaatatcgcattgaagtgcaatctaaagctcggtggcatcaaccagattgtcgaaaacaagagccttggcatcatcgatcaaaacaagacgatggtggttggtatcgatgtgacccacccttctccaggctcggcttccaacgctccttctgtatcggcgatggttgcttctgtcgacaaatttcttggacaatggcctgcgacgctgcggatccagcgcggaaggcaggaaaatgtcgacgatctcgctgaaatgttgaagtcgcgtctcaacctctggaggaccaagggcaagcaccccgcattccccgagaacattctcatttatcgcgacggagtatcagaaggacaatatgacatggtgctgtcacaggagcttccccagctgcgaaaggcatgcgaggcactgtatcccgcaactgacaccaagaagggtcttccacgcttcacggttgtcgtctgtggtaagcgacataagacacgcttctatccaacggcggagaaagattgcgatggcgtgggggacaagagctctggcaatacgaagcctggcaccgtcgtcgatcgcggcgtgacagaggcccgcaactgggatttcttccttcaagctcacgccgcactccaaggaacagcgcgtccttgccattactatatcgttcacgacgagatcttccgccagatctacgctaaacagatcccgccacagttctgcaacattgccgatatcgtggaagaccttacccataacatgtgttatctgttcggtcgtgcgacgaaggctgtaagtctgtgcccgccagcatactacgccgatctggcttgtgagcgggctcgttgctacttagcaaacctgttcgatacgccgacggcaagtgctgcgccttccgttgctggaacttccgtagctgggggtgcgtcgctggacccgagcgcgtcggatgttcagatccatcccaggctcaaggacactatgttctacatctaggcaatggcggcatgggtagtcacttacatacagctatcacccctggtacaagatgtagattgcaaagttaaaaaaggacgtctaggtgaggaagaacctacccggcattgagtggcaattcatcgctacaacatccatcgatatggcaacgtgtcggtgatccaagatcatactgttcattattactagatacacagctccataacagccaaatacactcattcatcagccccgac
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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