LOCUS       XM_046164784            3407 bp    mRNA    linear   PLN 28-JAN-2022
DEFINITION  Alternaria rosae NRDE-2, necessary for RNA
            interference-domain-containing protein (BKA58DRAFT_151049), mRNA.
ACCESSION   XM_046164784
VERSION     XM_046164784.1
DBLINK      BioProject: PRJNA801206
            BioSample: SAMN05878025
KEYWORDS    RefSeq.
SOURCE      Alternaria rosae
  ORGANISM  Alternaria rosae
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae;
            Pleosporaceae; Alternaria; Alternaria sect. Pseudoalternaria.
REFERENCE   1  (bases 1 to 3407)
  AUTHORS   Mesny,F., Miyauchi,S., Thiergart,T., Pickel,B., Atanasova,L.,
            Karlsson,M., Huettel,B., Barry,K.W., Haridas,S., Chen,C., Bauer,D.,
            Andreopoulos,W., Pangilinan,J., LaButti,K., Riley,R., Lipzen,A.,
            Clum,A., Drula,E., Henrissat,B., Kohler,A., Grigoriev,I.V.,
            Martin,F.M. and Hacquard,S.
  TITLE     Genetic determinants of endophytism in the Arabidopsis root
            mycobiome
  JOURNAL   Nat Commun (2021) In press
REFERENCE   2  (bases 1 to 3407)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JAN-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3407)
  AUTHORS   Haridas,S., Mesny,F., Miyauchi,S., Thiergart,T., Pickel,B.,
            Atanasova,L., Karlsson,M., Huttel,B., Barry,K.W., Chen,C.,
            Bauer,D., Andreopoulos,W., Pangilinan,J., LaButti,K., Riley,R.,
            Lipzen,A., Henrissat,B., Kohler,A., Grigoriev,I.V., Martin,F.M. and
            Hacquard,S.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAR-2021) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_025763573).
            
            ##Metadata-START##
            Organism Display Name :: Alternaria rosae MPI-PUGE-AT-0040
            GOLD Stamp ID         :: Gp0141910
            ##Metadata-END##
FEATURES             Location/Qualifiers
     source          1..3407
                     /organism="Alternaria rosae"
                     /mol_type="mRNA"
                     /strain="MPI-PUGE-AT-0040"
                     /db_xref="taxon:1187941"
                     /chromosome="Unknown"
                     /country="Germany:Pulheim"
     gene            1..3407
                     /locus_tag="BKA58DRAFT_151049"
                     /db_xref="GeneID:70194530"
     CDS             209..3262
                     /locus_tag="BKA58DRAFT_151049"
                     /codon_start=1
                     /product="NRDE-2, necessary for RNA
                     interference-domain-containing protein"
                     /protein_id="XP_046026292.1"
                     /db_xref="GeneID:70194530"
                     /db_xref="InterPro:IPR013633"
                     /db_xref="JGIDB:Altro1_151049"
                     /translation="

MTSNIPKFASFRPKPKAAPEPPKEPQHHEKAERSPKEKRSTKGRSPSPNRHVRGHESSKDRPYFSDRRGDPEVLRYGTMHRYDIPPYRRFGHGFILGLSVNQKIDREYSTDRKILVTPATRRRQERLLTSKRANKSSERALRLLKAEVPDVDHSQDFLSLSANAKRKRDDSEDEDAEMEPRTDYRGIEGPKSTEPVDPDTQYESDPDVTIDTEVTCKNSQLARQTKQHPGDLQSWLDLIKHQEAMLKLERPSAELTASDRAHLADIRISTYEEALKKIGGDQDSKLKLYKGLLEEAGRAWDGARLTSKWNDVLAKHPQSVELWMKYLDFVQSRFTSFKFEECRATFFKCIESLRTTKSEVSVEQTLHILLRLTSMTHDAGYQELALAVWQAVLEHHLLQPEVDTDLQAFKQFWESEVSRIGEPGAKGWKHSNTDDAPPPGPPSPHEKEASDAVFEDFRRREVEATSVLRLPGRTSDDVAEDDAFHTIFFSDVEPYLAIISPDTPAILIIEAFLCFCGLPTLPHRTPQQRTWWSDLFLQRYWHSTSPDTDDSTQLTKTIKRFSNYSAKHSQMTTELLFEQSFSLDGIRLDADFIRRLLKLLASDISSDDIIGEYLLAFESKHFPVEVFKSAKRLLKARPSSLRLYNAYGIVESRLGNSVKADQVFGMALSMQKGDSVLSLPWSLELFSNWVWEALRRGEHSEALWRLVSPKGSLPAGAAKDSHPDNTLLETAHLTLSQKSEHALLHHDYTTAITSTSLLALLTYLTHNNSASQALELHANLTSWFTSHHLSTSAVAELHVQSIANLLTHHTAHAPIVKPSLTRSTLEPLISRFPTNTILLALYAANEARFSVDDRVRGIMHQNALQNPEERSIPGWAFAIHYETLKGEIAGSTTHSIRALYKRATESTTGSRCPALWKAYVEFEMRCLREESARQRANKRPRRDGKKSRWEVRVEEAEQRVRDTFYAGLRNLPWCKEYIMLAFTEARDVFGEEDKGRLYRVMMEKELRLYVELDAEDV"

     misc_feature    392..>547
                     /locus_tag="BKA58DRAFT_151049"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    866..1759
                     /locus_tag="BKA58DRAFT_151049"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      

atcctcgttgtgttcgcagtaaaagacatacgcctgccagtcctgtttctatagggaacatgtctgactcctcaattcgcaatcagtctcttgacttgtgactacacgcgtcgcatatattcctgtactgaaagcaccaaccacaactatgatatttgtctgaagcttgatctacaagtagaaaattgctggagtcgcgccttacgcaatgacgtcgaacatccccaaatttgcgagcttccggccaaagcccaaggccgccccagagccacccaaggaaccccaacaccatgagaaagccgaacgatcgccaaaagaaaaacgttctaccaaggggaggtcaccatcgccaaatcgacatgttcgcgggcacgagtcaagcaaagacaggccctacttcagcgaccgacgcggagatcccgaagtactgcggtatggaacaatgcaccgttatgacatcccaccctaccgtcgcttcggtcatggcttcatactaggactttctgtaaaccaaaagatcgatagagagtactcaacggatcgaaaaatactagtgacgccagcgacacgaaggcggcaagagcgactgctgactagcaagcgtgcgaacaagtcgagtgagcgcgcgttgcggctgctgaaggccgaggtccccgatgtggatcactctcaggactttctgtcattgtctgcaaacgcaaagaggaagcgcgatgacagtgaagatgaagatgccgagatggagcctaggacagactaccgcggcatcgaagggccaaagtcaacagagcctgtggatccagacacgcaatatgagtcggacccggatgttacaatcgacactgaagtcacgtgcaagaactcgcagctcgcgcggcagacgaaacagcatcctggagatctccaaagctggctggacttgatcaaacaccaagaagccatgctaaagctcgaaaggccatctgctgagctgactgcatctgacagagcacatcttgctgatatacgtatctccacatatgaggaggctttgaaaaagatcggcggggatcaagacagcaagctgaaactgtacaaaggactgctggaagaagcaggaagggcctgggatggcgccagactgaccagcaaatggaatgacgtgcttgcgaagcatccgcagagcgtggagctatggatgaagtatcttgactttgtgcagtcacgcttcaccagtttcaagtttgaggagtgtcgggcgaccttcttcaaatgcatcgagtctcttcgtacaaccaaaagcgaagtgtctgtggaacaaaccttgcatatactactgcgtttgacatctatgacacacgatgcaggataccaggaactcgctctcgccgtgtggcaagctgtactcgaacatcatttgctacaaccagaagtagacacagaccttcaggctttcaagcagttctgggaaagcgaagtgtctcgcatcggtgagcctggggcaaagggatggaagcatagcaacacagatgatgcgccgcccccaggtcctccgtctccgcacgagaaagaagcatcagatgctgttttcgaagattttcgaaggcgcgaagtggaggctacgtcggtgttacgactccctggtcgcacgtcagacgatgtagcagaggatgatgcatttcacacaatcttcttctctgatgtcgagccatacctggctatcatctcgcctgacacaccagcaatactgatcattgaagctttcttgtgtttctgcggcctgccgactttaccacatcgcacaccacaacaacgtacctggtggtctgatctgttcttgcagcgctattggcactctacttctccggacaccgacgattctacgcaactcacaaaaaccatcaaacgcttctcgaactattcagcaaaacactcccagatgaccacggagctcctattcgagcaaagcttctcactagatggcatcagacttgacgcggacttcatcaggcgcttgctcaagctcctagcttcagacatttccagcgatgatattataggagagtatctgctagctttcgaatcgaaacacttcccagtggaagtgttcaagtccgcgaagcgattactcaaagcgcgtccgtcaagcttgcgcttgtataacgcctatggaatagtcgaatcgcgtctaggtaactctgtcaaagcagatcaagtgtttggaatggcgctgtctatgcagaaaggagacagtgtgctctcattaccttggagtttggaacttttcagtaactgggtatgggaagcactcagacggggagaacacagcgaagccttatggcggctcgtctcaccaaagggtagccttccagccggcgcagccaaagactcacaccccgacaacactcttcttgagacagcacatctaaccctcagccaaaaaagcgaacacgccctactccatcacgactacacgacagcaataacaagcacctccctcctcgccctcctaacctacctcacccacaacaactccgcatcacaagccctcgaactccacgccaatctcacctcatggttcacatcgcaccatctctccacctccgccgtcgcagaactccacgtccaatccatcgccaacctcctcacccaccacaccgcccacgcccccatcgtcaaaccctctctcacccgctccactcttgagccgctcatatcccgcttcccaactaacacgattctcctcgcgctctatgccgcaaacgaagcccgcttctctgtcgacgaccgcgtacgaggtatcatgcaccagaacgccttgcagaaccccgaagaaaggagtataccaggctgggcctttgccatacactacgaaaccctcaagggagaaattgcaggttcgaccacgcattccatccgtgcattgtacaagcgcgccacggagtccacgactggatctcggtgtccagcactgtggaaagcgtacgtggagtttgaaatgcggtgtctacgtgaggagtcggcgagacaacgagcgaataagagaccgcgtagggatggcaagaagagtagatgggaggtgcgggttgaggaggcggagcaacgggttagagacacgttttacgctggattgaggaatttgccgtggtgtaaggagtatattatgctcgcttttacggaagcaagagatgtgtttggtgaggaggataagggaaggttgtatagggtcatgatggagaaggagttgaggctttatgttgagttggatgccgaggatgtatagatgaagtgaagggtgcagtagattggatagtcagacgtgttagcgtaagcatgagcgaagaagctgataatggccatcttgtacggggaggcttttttgaacaaaatatataaccatgtacattaatcgcccgtatctatcctac

//