2024-04-26 22:58:36, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_046140839 3551 bp mRNA linear PLN 28-JAN-2022 DEFINITION Boeremia exigua NRDE-2, necessary for RNA interference-domain-containing protein (C7974DRAFT_384349), mRNA. ACCESSION XM_046140839 VERSION XM_046140839.1 DBLINK BioProject: PRJNA801204 BioSample: SAMN11533434 KEYWORDS RefSeq. SOURCE Boeremia exigua ORGANISM Boeremia exigua Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Didymellaceae; Boeremia. REFERENCE 1 (bases 1 to 3551) AUTHORS Mesny,F., Miyauchi,S., Thiergart,T., Pickel,B., Atanasova,L., Karlsson,M., Huettel,B., Barry,K.W., Haridas,S., Chen,C., Bauer,D., Andreopoulos,W., Pangilinan,J., LaButti,K., Riley,R., Lipzen,A., Clum,A., Drula,E., Henrissat,B., Kohler,A., Grigoriev,I.V., Martin,F.M. and Hacquard,S. TITLE Genetic determinants of endophytism in the Arabidopsis root mycobiome JOURNAL Nat Commun (2021) In press REFERENCE 2 (bases 1 to 3551) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (28-JAN-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3551) AUTHORS Haridas,S., Mesny,F., Miyauchi,S., Thiergart,T., Pickel,B., Atanasova,L., Karlsson,M., Huttel,B., Barry,K.W., Chen,C., Bauer,D., Andreopoulos,W., Pangilinan,J., LaButti,K., Riley,R., Lipzen,A., Henrissat,B., Kohler,A., Grigoriev,I.V., Martin,F.M. and Hacquard,S. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (30-MAR-2021) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_025763518). ##Metadata-START## Organism Display Name :: Boeremia exigua MPI-SDFR-AT-0100 GOLD Stamp ID :: Gp0224132 ##Metadata-END## FEATURES Location/Qualifiers source 1..3551 /organism="Boeremia exigua" /mol_type="mRNA" /strain="MPI-SDFR-AT-0100" /db_xref="taxon:749465" /chromosome="Unknown" gene 1..3551 /locus_tag="C7974DRAFT_384349" /db_xref="GeneID:70170259" CDS 164..3220 /locus_tag="C7974DRAFT_384349" /codon_start=1 /product="NRDE-2, necessary for RNA interference-domain-containing protein" /protein_id="XP_046003564.1" /db_xref="GeneID:70170259" /db_xref="InterPro:IPR013633" /db_xref="JGIDB:Boeex1_384349" /translation="
MSSSAPKFASFRPKPKVPEQPLSVESRREEKEHRKHSSSREKPREDRRRTPPREQREHDRDASSKRAYFSDRRGDLDIVKYGTLNRYDIPSYRRSGFGNVLGLPGQKIDREYSTEKKIYILPLVRRRQKRMLTDKSAARDSNRTLRLIKIAEDHYADASRDFIALSGTGKRKRTPGSDSEDDAPRADYRGIDEKPDPNKVDDADTYYESDTEAAIASSEITQKNSRLIRETRDDPGNLQAWLDLVEHQESMMKLDRAISELSAADRQNLADVRISTYEEALRKIGDNITNQIELQSGLLHEAQRHWDDAKVAGNWQDVLKRYPHSVKLWSRYIDFVQSTFSRFKYEECRAVFSNALEALRSVNSGDQTATAEARLHLIVRLTTMIQQAGYQELALAIWQAVLEFSLLAPQNLAAEKSKQFEEFWESEAPRIGETDCKGWRHTSIDDAVPPVCSITLDTSASRSSLEDFRKRELDSINKLRYPGRSTDEVGEDDPFHTVFFSDLKDYVGDFPELSADTQIDAFLCFCGLPAMIQQSEIGPWRTDSFLQSRTSSFETAAEMGSESLQYEEALSRYCQNPIARFRMTRDLLVQQTFSLDSSRLSPEFVRTTLKLLVTNIPDSECVGEYLLAFESRHFPSDVTKSAKRLLKERPSSVRLYNMYGTAEGQRSNSTKAVQIFSAALNIKSASVDRLELLESYVWQALQDDDKVEALRRLVQYHGGSFSEQSASASIETARAAFQASLEEGLLSQNYAHAVLNANHLALLAYLSGKSTISAALVAHSNLTAWFASHKLTSSVPAETHAQAIARLLAYHVTHTSIVKPALLRDALEPLIATFPDNTILLSVYAANEARFSIDDRLRGNMLRVLNTSSSSSVTTWAFAIHHESLKGEVAGSTHHSRRALYKRATHPDAAGAHCPALWEMYLRFELERFRAEQRLRPDKRPRRDGKKNKFEIGVEEARERVRETFYRGLKALPWCKDFVMLAFGEAGEVFGDEELGRLYGVMVEKEMRVYVEMDGLGA"
misc_feature 362..>514 /locus_tag="C7974DRAFT_384349" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature 848..1744 /locus_tag="C7974DRAFT_384349" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
aatgctggataaacaggccaatgcagccgtcgataatacggaatcgtgagccttgaaatcaccggagtaatgtcttggcgaccacgttcccatcctctcgccaacatcatctgagcggtgcatctacggcaaccctcagccctcagcgcggtgcagtgccagcatgagctccagcgctccaaagtttgccagcttccggccgaagcccaaggtacccgagcagcctctgtcggttgaatctcgccgcgaagagaaggagcatagaaaacacagttcatcgagggagaagccgcgggaggatcgaaggagaacaccgccacgcgaacagcgggagcatgaccgagatgcatcttcgaaaagggcctatttcagcgaccgccgcggggatctcgacatcgtcaagtacgggacgctgaaccgctacgacataccaagctatcgacgcagtggcttcggcaatgtgcttgggctgcccggccagaagatcgaccgcgaatactcgactgaaaagaaaatctacatcttacctcttgtacgtcggcgtcaaaagcggatgctcaccgacaagtccgcagcaagagacagcaaccgtactctgcggcttattaagattgcagaggaccactatgccgacgcaagtcgtgacttcattgcgctgtcaggcaccggcaaacggaagcgaactcctggcagtgacagcgaggatgatgcgccacgcgcagactatcgtggcattgacgaaaagccggaccccaataaagttgacgacgcggatacctactacgagtcagacacggaggctgcaatcgccagctctgaaattacgcagaagaattccaggctcattcgagagactcgagatgatccaggaaacctgcaggcttggctggacctcgtcgaacatcaggaatcgatgatgaagctggatcgggcgatctctgagctctcagcggccgatcgacaaaaccttgctgatgtgcgcatctcaacatacgaagaagctttgcgcaagatcggcgacaacataacgaatcagatcgaactccaatccggactcttacatgaagcgcagagacattgggatgatgcgaaagtggcagggaattggcaagatgtgctcaagcgatatcctcacagtgtaaaactgtggtccagatatatcgacttcgttcaatcgacattctcgaggttcaagtatgaagaatgtcgcgctgtcttctcaaatgctctcgaggcactgcgatcggtgaactcgggagatcagacagctacagcagaagctaggctgcatctcattgtgcgtctcacaacgatgatccagcaagctgggtaccaggagcttgcattggccatctggcaagccgtactcgagttcagcctgctggctccccagaaccttgccgctgaaaagtcaaagcaattcgaagagttttgggagagcgaggcacctcgtattggcgagacagattgcaaaggctggagacatacatcgattgacgatgcagtgccgccggtgtgttctatcacgctcgatacatctgcttcaaggtcttcactcgaggactttcgaaaacgtgagcttgactccatcaacaaacttcggtatcctggccgctccacagatgaggtgggcgaagatgacccattccacacagtcttcttctctgatctgaaggattatgtcggtgactttcctgagctctcggcggatacacagattgatgcattcttgtgcttctgcgggcttcctgcaatgattcagcagagtgaaattggcccttggaggaccgattcgttcttgcaaagcaggacttcttcctttgagactgcagcagagatgggatcggaaagtcttcaatacgaggaagcactctcacgatactgtcaaaacccaatcgccagattccggatgacaagggatctgttggtgcaacagacattctcactcgacagctccaggctcagtccggagttcgtcaggaccaccctgaagttattggtcacaaatattccagacagcgagtgcgttggtgagtacctgctagctttcgagtcaaggcactttccttcagacgttactaaaagcgcaaaacgactgctcaaagaacgaccctccagcgtccgactctacaacatgtacgggactgctgaagggcagcgcagtaactctacaaaggcggttcaaatcttttctgccgcactcaacatcaaatctgcctccgtagatcgcctcgaacttttggagagctacgtttggcaggcattacaagacgacgacaaggtggaggctctccggcggttggtgcaataccatggcgggtcattctctgagcagtctgcatctgcctccattgagacagctcgtgccgcgttccaagcctcactcgaagaggggcttctgagccagaactacgcacacgcagtcctaaacgctaatcaccttgcactgctcgcctacctatccggtaaaagcactataagcgccgctctggtagcccacagcaacctcaccgcctggttcgcatcgcacaagctcacctcctcggtccccgcagaaacccacgcccaggccatagctcgtctgctcgcctaccacgtcacccacacctccatcgtaaaacccgcgctcctccgtgacgctctcgagcccctcatcgccacattccccgacaacacgatcctcctctccgtgtacgccgcaaacgaggcgcgcttttccatcgacgaccgcctgcgcggtaacatgctgcgcgtccttaatacctcgtcgagctcgagcgtcacaacctgggctttcgcgatccaccacgagagcctgaaaggcgaagtcgcaggctcaacacaccactcccgccgcgcgctgtacaagcgggctactcaccccgacgccgcgggcgcccactgcccagcgctgtgggagatgtatctgcgtttcgaactcgagcggtttcgcgccgaacagcgtctgcggccggataagcgaccacgcagggatggaaagaagaataagttcgagataggggttgaggaagcgcgtgaacgggtccgggagacgttctaccgcggactgaaggcgctgccgtggtgtaaggatttcgtgatgctggcttttggggaggcgggagaggtgttcggggatgaggagttggggcggttgtatggggttatggtggagaaggagatgagggtgtatgttgagatggatgggctgggggcttgaggttgatggtgggtacgtagtctgcgactcgagaatcgtaccgcaatacgtggatgtcgcgatgttagtactagacgtcactatggacggtgatatctcccagtgtcgaatggcaggagctatccggtgctactagcgcggtctagtgcgatgatcttgcggcaggtggggtgacttcacgtctcttatgagtcgttgcatcttgtttatcggcgacaaacagttgattagggttctcggcgtacgatcttcacctgtgtttgatcttcgcgagtactcactcgatgcacaatgcaagagctggggtgatagttgatccatttatcagtgc
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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