2024-03-29 19:24:42, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_041633482 3752 bp mRNA linear ROD 14-MAY-2021 DEFINITION PREDICTED: Microtus oregoni NRDE-2, necessary for RNA interference, domain containing (Nrde2), mRNA. ACCESSION XM_041633482 VERSION XM_041633482.1 DBLINK BioProject: PRJNA729470 KEYWORDS RefSeq. SOURCE Microtus oregoni (creeping vole) ORGANISM Microtus oregoni Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Microtus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024543210.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Microtus oregoni Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3752 /organism="Microtus oregoni" /mol_type="mRNA" /isolate="MIOR12" /isolation_source="kidney" /db_xref="taxon:111838" /chromosome="Unknown" /country="USA: Oregon" /lat_lon="45.06 N 124.0 W" /collection_date="2018-08" gene 1..3752 /gene="Nrde2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:121434481" CDS 38..3535 /gene="Nrde2" /codon_start=1 /product="nuclear exosome regulator NRDE2" /protein_id="XP_041489416.1" /db_xref="GeneID:121434481" /translation="
MALFPAFADVSEASGGGASRKELDWLSNPSFCVGNLTSLSQRTEEVTALAAEGSPLTRSPLRSELSGESDTSRTAPQVSRKKKKEKKKKRKHQHRKKTKRIHEQSSSGGSESDTDSGKDRSSRSIKDSQKESEKPSQGSDAVGVAAAGHRSIWLEDIQTLAEVFMTDRKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGTSAVKKHAHKHLERYFTKKSVGLMRTEGIAVCGNTEPPSSEPVPFIPVKDPADVAAPVATWLNPLGIYDQSTTQWLQGQGPLEQEPKQPDSQRDRESAVLKARVEEFNRKVRENPRDTQLWMAFVAFQDEVMRSPGLYALEDGEQEKHRKSLKLLLEKKLAVLERAIESNPSSVDLKLAKLQLCAEFWEPSALAKEWQKLLFLHPNNTDLWQRYLSFCQSQFGTFSVSKLHSLYGKCLSTLSAVKDGSILSHPVLPGTEEAMFALFLQQCHFLRQAGHSEKVISLFQAMVDFTFFKPDSVKELPTKAQVEFFEPFWDSGEPRVGEKGARGWRAWMHQQERGGWVLVNPDEDEEEPEEDDQEIKDKTLPRWQIWLAVERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSPGLHFQLIEAFLQFLGVPSGFLPPASCLYLAMDESSVFDSELYDEKPLTYFNPSFSGISCVGYMEQLGCPRWTKGHSREGEDFIRNVFHLVLSLFSGKQKSQLCLSWLRYEVAKVIWCLHTKKKRLKSQGKNCKKLAKNLLKEPENRNNFCLWKQYAHLEWLLGNIEDARKVFDTALSMAGSSELKDRELCELSLLYAELEMELSPDSRGAATGRAVHVLTRLTESSPYGPYTGQVMAIQVLKARKAYERALQDCLGQTCASDPAPAESLDCLGSLVKCFMLFQYLTVGIDAAVQIYGQVFAKLKDSVLPEGPGPEDSARSQSLSSVLEAVTLLHSSLLRFHMNSSVYPLVPLRETLSEALKLYPGNQVLWRAYVQIQNKSHSANKTRRFLDVVTRSAKHLEPWLFAIEAEKMRKRLVDSVQRVGGREVHATIPETGLTHRIRNLFENAIRSDKGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQSCPWAKVLYMDAMEYFPDELQEILDVMTEKELRVRLPLEELELLLED"
misc_feature 527..814 /gene="Nrde2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(527..550,557..562,572..577,581..583,587..631, 638..646,650..658,680..688,698..703,707..712,719..739, 764..775,785..814) /gene="Nrde2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 980..1978 /gene="Nrde2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
catttctgtggagggagtgttggtgcggcctgggaacatggcgctgttcccggcctttgcggacgtaagtgaggcctccggtggtggggcatccaggaaagaattagactggctgagcaacccaagcttttgtgttgggaatctaacgtctctgagccaacgaactgaagaggtcacagcccttgctgctgaagggtcacctctgacaaggagtcctctgaggtcagaactctccggtgagagtgacactagcagaacagccccccaggttagcagaaaaaagaagaaagagaaaaagaaaaagaggaaacatcagcaccgcaagaaaactaagaggatacacgagcagtcgagcagcggtgggtctgagtcagacacagattctgggaaggacaggtcttcaagaagcatcaaggacagtcagaaggaatctgagaaacccagtcagggaagtgatgctgttggtgttgctgctgctggacaccggtccatttggctggaagacattcagactctggcagaagtattcatgacagataggaaaccagatcctgccaactgggagtataaatctctttaccgaggggatatagcaaggtacaagaggaaaggagactcctgcctgggcattaatcctaagaaacagtgtatatcttgggaagggacttctgcagttaagaagcatgcacacaagcacctggagcgctattttaccaagaagagtgtgggattaatgcgcactgaggggattgctgtgtgtggtaacaccgagcctccctcctctgagccagtcccatttatcccagtgaaggatcctgctgatgtggctgctcctgttgcaacatggctgaatcctctggggatttatgatcagtcaactacacagtggttacaaggacagggtccactagagcaagaaccaaagcagccagactcacagcgggacagggagagcgctgttcttaaggccagagtggaggagttcaacagaaaagtgcgggagaatcctcgggatactcagctgtggatggcctttgtagctttccaggatgaggtcatgaggagccctggcctgtatgctcttgaggacggagagcaggagaagcacaggaagtctctgaagctcctcctggagaagaagctggccgtgctagagcgggccatcgagagcaacccaagcagtgtggacctgaagctcgccaagctgcagctgtgtgcggagttctgggagcccagcgcgctggccaaggagtggcagaagctcctctttctgcaccccaacaacacagacctgtggcagcgctacctctccttttgccagagtcagtttggcaccttctctgtgtccaaactccacagtctgtacggcaagtgcttgagtaccttgtctgctgttaaggatggtagcatcttatcccacccggtactgccgggcacagaggaggccatgtttgcactatttcttcagcagtgccactttctgcggcaggccggccactcggagaaggtcatctctttgttccaggccatggttgacttcaccttcttcaagcctgacagtgtaaaagagctgcctactaaagcacaggtggaattctttgaacccttctgggacagcggagagccccgtgttggggagaagggcgcccgaggctggcgggcgtggatgcaccagcaggagcgtggtggctgggtgcttgtcaatccagatgaggatgaggaggagccagaagaggatgaccaggagataaaagataagactctgcccaggtggcagatctggcttgctgttgaacgttctcgagaccagaggcactggcggccctggcgtccagataagaccaagaagcaaacagaagaagactgtgaggaccccgagagacaggtgctgtttgatgacattgggcaatctctgatcagactttccagcccaggtcttcatttccaactcattgaggcctttctgcagttcttgggcgtgccttccggttttcttcctccagcctcctgcctttacctggccatggacgagagcagcgtctttgatagtgaactttatgatgaaaagcccttgacttacttcaacccttcattttcgggcattagctgtgttggctacatggagcagttgggctgtcctcgctggaccaaaggtcacagccgagagggcgaggattttatccgcaatgtcttccaccttgtgctgtctttgttctcaggcaagcagaagtctcaactctgcctctcctggttgcggtatgaggttgccaaggtcatttggtgtctacacactaaaaagaagcgattaaagtctcagggaaagaactgcaaaaaactagccaagaatctccttaaagagccagaaaaccgcaacaacttttgcctctggaaacagtatgcacacctggagtggttgcttggcaacatagaggatgccagaaaagtgtttgatacagcactcagcatggcgggcagcagtgagctgaaggaccgtgaactctgtgaactcagtctgctttatgccgagctggagatggaactgtcgcctgactcccgaggagcggccacaggccgagctgtccacgtgttaacgcgactgaccgagagcagtccctatgggccctacactgggcaggtcatggccattcaggttctgaaagcccgaaaagcttatgaacgcgctttgcaggactgtctgggacagacttgtgcctcagacccagctcctgcagagtccctggactgcctggggagcttggtcaaatgctttatgcttttccagtatttgactgttgggatcgatgctgctgtgcagatatatggacaggtgttcgccaagctgaaggactctgttctcccggaaggccctggcccggaggacagtgccaggtcccagagtttgagcagtgttctcgaggccgttaccctgctgcatagcagtctgctgcgattccacatgaacagtagtgtgtaccctcttgttccactccgagagacgctctcagaggctctaaagctgtacccaggcaaccaggttctctggagggcatatgtacagattcagaataagtcccacagtgctaacaagaccaggagattcttggacgtagtcaccaggtctgccaaacacttggagccgtggctgtttgcaattgaagccgagaagatgaggaaaagactggtggactctgttcagagggtaggtggtagagaggtccacgccaccatcccagagaccggccttacgcatcggatcaggaacttgtttgaaaatgcaattcggagcgacaagggcagccagtgcccccttctgtggaggatgtatttgaattttttggtttccttaggaaacaaggagagaagcaaaggtgtgttctacaaggccctccagagctgtccctgggcaaaggtgctgtacatggatgccatggagtacttcccagatgagctgcaggagatcctggatgtgatgactgagaaggagcttcgtgtacgcctgcccctggaggagctggagctactgctggaggactagagtcaacctccgcagaagggagcgagcgaggacagtggggcccaggagagccccagctgtgcaagggctttctccactgtttgggtggggtttggacttactgttttacatattatatatgtgatcaactatgtacagatggagccaggccagtgataaaccttttatggttgagatgtgtgcagcttcttattccttctgctcaaccgtgttcagt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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