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2024-03-29 19:24:42, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_041633482            3752 bp    mRNA    linear   ROD 14-MAY-2021
DEFINITION  PREDICTED: Microtus oregoni NRDE-2, necessary for RNA interference,
            domain containing (Nrde2), mRNA.
ACCESSION   XM_041633482
VERSION     XM_041633482.1
DBLINK      BioProject: PRJNA729470
KEYWORDS    RefSeq.
SOURCE      Microtus oregoni (creeping vole)
  ORGANISM  Microtus oregoni
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Cricetidae; Arvicolinae; Microtus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_024543210.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Microtus oregoni Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.6
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3752
                     /organism="Microtus oregoni"
                     /mol_type="mRNA"
                     /isolate="MIOR12"
                     /isolation_source="kidney"
                     /db_xref="taxon:111838"
                     /chromosome="Unknown"
                     /country="USA: Oregon"
                     /lat_lon="45.06 N 124.0 W"
                     /collection_date="2018-08"
     gene            1..3752
                     /gene="Nrde2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:121434481"
     CDS             38..3535
                     /gene="Nrde2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2"
                     /protein_id="XP_041489416.1"
                     /db_xref="GeneID:121434481"
                     /translation="
MALFPAFADVSEASGGGASRKELDWLSNPSFCVGNLTSLSQRTEEVTALAAEGSPLTRSPLRSELSGESDTSRTAPQVSRKKKKEKKKKRKHQHRKKTKRIHEQSSSGGSESDTDSGKDRSSRSIKDSQKESEKPSQGSDAVGVAAAGHRSIWLEDIQTLAEVFMTDRKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGTSAVKKHAHKHLERYFTKKSVGLMRTEGIAVCGNTEPPSSEPVPFIPVKDPADVAAPVATWLNPLGIYDQSTTQWLQGQGPLEQEPKQPDSQRDRESAVLKARVEEFNRKVRENPRDTQLWMAFVAFQDEVMRSPGLYALEDGEQEKHRKSLKLLLEKKLAVLERAIESNPSSVDLKLAKLQLCAEFWEPSALAKEWQKLLFLHPNNTDLWQRYLSFCQSQFGTFSVSKLHSLYGKCLSTLSAVKDGSILSHPVLPGTEEAMFALFLQQCHFLRQAGHSEKVISLFQAMVDFTFFKPDSVKELPTKAQVEFFEPFWDSGEPRVGEKGARGWRAWMHQQERGGWVLVNPDEDEEEPEEDDQEIKDKTLPRWQIWLAVERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSPGLHFQLIEAFLQFLGVPSGFLPPASCLYLAMDESSVFDSELYDEKPLTYFNPSFSGISCVGYMEQLGCPRWTKGHSREGEDFIRNVFHLVLSLFSGKQKSQLCLSWLRYEVAKVIWCLHTKKKRLKSQGKNCKKLAKNLLKEPENRNNFCLWKQYAHLEWLLGNIEDARKVFDTALSMAGSSELKDRELCELSLLYAELEMELSPDSRGAATGRAVHVLTRLTESSPYGPYTGQVMAIQVLKARKAYERALQDCLGQTCASDPAPAESLDCLGSLVKCFMLFQYLTVGIDAAVQIYGQVFAKLKDSVLPEGPGPEDSARSQSLSSVLEAVTLLHSSLLRFHMNSSVYPLVPLRETLSEALKLYPGNQVLWRAYVQIQNKSHSANKTRRFLDVVTRSAKHLEPWLFAIEAEKMRKRLVDSVQRVGGREVHATIPETGLTHRIRNLFENAIRSDKGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQSCPWAKVLYMDAMEYFPDELQEILDVMTEKELRVRLPLEELELLLED"
     misc_feature    527..814
                     /gene="Nrde2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(527..550,557..562,572..577,581..583,587..631,
                     638..646,650..658,680..688,698..703,707..712,719..739,
                     764..775,785..814)
                     /gene="Nrde2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    980..1978
                     /gene="Nrde2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      
catttctgtggagggagtgttggtgcggcctgggaacatggcgctgttcccggcctttgcggacgtaagtgaggcctccggtggtggggcatccaggaaagaattagactggctgagcaacccaagcttttgtgttgggaatctaacgtctctgagccaacgaactgaagaggtcacagcccttgctgctgaagggtcacctctgacaaggagtcctctgaggtcagaactctccggtgagagtgacactagcagaacagccccccaggttagcagaaaaaagaagaaagagaaaaagaaaaagaggaaacatcagcaccgcaagaaaactaagaggatacacgagcagtcgagcagcggtgggtctgagtcagacacagattctgggaaggacaggtcttcaagaagcatcaaggacagtcagaaggaatctgagaaacccagtcagggaagtgatgctgttggtgttgctgctgctggacaccggtccatttggctggaagacattcagactctggcagaagtattcatgacagataggaaaccagatcctgccaactgggagtataaatctctttaccgaggggatatagcaaggtacaagaggaaaggagactcctgcctgggcattaatcctaagaaacagtgtatatcttgggaagggacttctgcagttaagaagcatgcacacaagcacctggagcgctattttaccaagaagagtgtgggattaatgcgcactgaggggattgctgtgtgtggtaacaccgagcctccctcctctgagccagtcccatttatcccagtgaaggatcctgctgatgtggctgctcctgttgcaacatggctgaatcctctggggatttatgatcagtcaactacacagtggttacaaggacagggtccactagagcaagaaccaaagcagccagactcacagcgggacagggagagcgctgttcttaaggccagagtggaggagttcaacagaaaagtgcgggagaatcctcgggatactcagctgtggatggcctttgtagctttccaggatgaggtcatgaggagccctggcctgtatgctcttgaggacggagagcaggagaagcacaggaagtctctgaagctcctcctggagaagaagctggccgtgctagagcgggccatcgagagcaacccaagcagtgtggacctgaagctcgccaagctgcagctgtgtgcggagttctgggagcccagcgcgctggccaaggagtggcagaagctcctctttctgcaccccaacaacacagacctgtggcagcgctacctctccttttgccagagtcagtttggcaccttctctgtgtccaaactccacagtctgtacggcaagtgcttgagtaccttgtctgctgttaaggatggtagcatcttatcccacccggtactgccgggcacagaggaggccatgtttgcactatttcttcagcagtgccactttctgcggcaggccggccactcggagaaggtcatctctttgttccaggccatggttgacttcaccttcttcaagcctgacagtgtaaaagagctgcctactaaagcacaggtggaattctttgaacccttctgggacagcggagagccccgtgttggggagaagggcgcccgaggctggcgggcgtggatgcaccagcaggagcgtggtggctgggtgcttgtcaatccagatgaggatgaggaggagccagaagaggatgaccaggagataaaagataagactctgcccaggtggcagatctggcttgctgttgaacgttctcgagaccagaggcactggcggccctggcgtccagataagaccaagaagcaaacagaagaagactgtgaggaccccgagagacaggtgctgtttgatgacattgggcaatctctgatcagactttccagcccaggtcttcatttccaactcattgaggcctttctgcagttcttgggcgtgccttccggttttcttcctccagcctcctgcctttacctggccatggacgagagcagcgtctttgatagtgaactttatgatgaaaagcccttgacttacttcaacccttcattttcgggcattagctgtgttggctacatggagcagttgggctgtcctcgctggaccaaaggtcacagccgagagggcgaggattttatccgcaatgtcttccaccttgtgctgtctttgttctcaggcaagcagaagtctcaactctgcctctcctggttgcggtatgaggttgccaaggtcatttggtgtctacacactaaaaagaagcgattaaagtctcagggaaagaactgcaaaaaactagccaagaatctccttaaagagccagaaaaccgcaacaacttttgcctctggaaacagtatgcacacctggagtggttgcttggcaacatagaggatgccagaaaagtgtttgatacagcactcagcatggcgggcagcagtgagctgaaggaccgtgaactctgtgaactcagtctgctttatgccgagctggagatggaactgtcgcctgactcccgaggagcggccacaggccgagctgtccacgtgttaacgcgactgaccgagagcagtccctatgggccctacactgggcaggtcatggccattcaggttctgaaagcccgaaaagcttatgaacgcgctttgcaggactgtctgggacagacttgtgcctcagacccagctcctgcagagtccctggactgcctggggagcttggtcaaatgctttatgcttttccagtatttgactgttgggatcgatgctgctgtgcagatatatggacaggtgttcgccaagctgaaggactctgttctcccggaaggccctggcccggaggacagtgccaggtcccagagtttgagcagtgttctcgaggccgttaccctgctgcatagcagtctgctgcgattccacatgaacagtagtgtgtaccctcttgttccactccgagagacgctctcagaggctctaaagctgtacccaggcaaccaggttctctggagggcatatgtacagattcagaataagtcccacagtgctaacaagaccaggagattcttggacgtagtcaccaggtctgccaaacacttggagccgtggctgtttgcaattgaagccgagaagatgaggaaaagactggtggactctgttcagagggtaggtggtagagaggtccacgccaccatcccagagaccggccttacgcatcggatcaggaacttgtttgaaaatgcaattcggagcgacaagggcagccagtgcccccttctgtggaggatgtatttgaattttttggtttccttaggaaacaaggagagaagcaaaggtgtgttctacaaggccctccagagctgtccctgggcaaaggtgctgtacatggatgccatggagtacttcccagatgagctgcaggagatcctggatgtgatgactgagaaggagcttcgtgtacgcctgcccctggaggagctggagctactgctggaggactagagtcaacctccgcagaagggagcgagcgaggacagtggggcccaggagagccccagctgtgcaagggctttctccactgtttgggtggggtttggacttactgttttacatattatatatgtgatcaactatgtacagatggagccaggccagtgataaaccttttatggttgagatgtgtgcagcttcttattccttctgctcaaccgtgttcagt
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]