2024-04-25 22:52:50, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_041484906 645 bp mRNA linear VRT 06-MAY-2021 DEFINITION PREDICTED: Pyrgilauda ruficollis claudin 3 (CLDN3), mRNA. ACCESSION XM_041484906 VERSION XM_041484906.1 DBLINK BioProject: PRJNA703052 KEYWORDS RefSeq. SOURCE Pyrgilauda ruficollis (rufous-necked snowfinch) ORGANISM Pyrgilauda ruficollis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Passeridae; Pyrgilauda. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024528710.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pyrgilauda ruficollis Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..645 /organism="Pyrgilauda ruficollis" /mol_type="mRNA" /isolate="IOZ18807" /db_xref="taxon:221976" /chromosome="Unknown" /sex="pooled male and female" /tissue_type="blood" /altitude="4200 m" gene 1..645 /gene="CLDN3" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 70 Proteins" /db_xref="GeneID:121362955" CDS 1..645 /gene="CLDN3" /codon_start=1 /product="claudin-3" /protein_id="XP_041340840.1" /db_xref="GeneID:121362955" /translation="
MSMGLEIGGVALSVLGWLCSIICCALPMWKVSAFIGNNIVTAQILWEGLWMNCVVQSTGQMQCKVYDSMLALPQDLQAARALLVVAIILAVLGLMVAIVGAQCTRCVEDESTKAKITIVSGVIFLLSGVMTLIPVCWSANTIIRDFYNPLVIEAQKRELGTSLYVGWAASALLLLGGGLLCCSCPPKDDRYPTGKVAYSAPRSAVTSYDKRNYV"
misc_feature 7..501 /gene="CLDN3" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN
atgtcgatggggctggagatcggcggcgtggccttgtccgtgctgggttggctgtgcagcatcatctgctgcgcgttgcccatgtggaaggtgtcggccttcatcggtaacaacatcgtgacggcccagatcctctgggaagggctgtggatgaactgcgtggtgcagagcacggggcagatgcagtgcaaggtctatgactccatgctggcgctccctcaggacctgcaagccgcccgtgccctgctggtggtggccatcatcttggccgtcctgggcttaatggtggccatcgtgggcgcccagtgcacccgctgcgtggaggatgagagcaccaaagccaagatcaccatcgtctccggcgtcatcttcctcctctctggtgtcatgaccctcatccctgtctgctggtcggccaacaccatcatccgggatttctacaacccgctggtgatcgaagcgcagaagcgagagctgggcacctcgctctacgtgggctgggcagcctccgcactcctgctgctgggggggggcctgctctgctgctcctgcccccccaaagacgacaggtaccccacgggcaaggtggcctactctgccccacgctccgccgtcaccagctacgacaagaggaactatgtctga
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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