2024-04-26 23:06:00, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_041479319 6396 bp mRNA linear VRT 06-MAY-2021 DEFINITION PREDICTED: Pyrgilauda ruficollis protein argonaute-4 (LOC121359931), transcript variant X1, mRNA. ACCESSION XM_041479319 VERSION XM_041479319.1 DBLINK BioProject: PRJNA703052 KEYWORDS RefSeq. SOURCE Pyrgilauda ruficollis (rufous-necked snowfinch) ORGANISM Pyrgilauda ruficollis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Passeridae; Pyrgilauda. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024526377.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pyrgilauda ruficollis Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6396 /organism="Pyrgilauda ruficollis" /mol_type="mRNA" /isolate="IOZ18807" /db_xref="taxon:221976" /chromosome="Unknown" /sex="pooled male and female" /tissue_type="blood" /altitude="4200 m" gene 1..6396 /gene="LOC121359931" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 17 ESTs, 51 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns" /db_xref="GeneID:121359931" CDS 277..2862 /gene="LOC121359931" /codon_start=1 /product="protein argonaute-4 isoform X1" /protein_id="XP_041335253.1" /db_xref="GeneID:121359931" /translation="
MEALGPGPPTSLFQPPRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDVDIKPEKRPRRVNREVVDTMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGKDQTFKVSIQWVSVVSLQMLLEALAGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNISEQSKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKLTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQETSQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
misc_feature 352..741 /gene="LOC121359931" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 772..924 /gene="LOC121359931" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 925..1287 /gene="LOC121359931" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1081..1083,1126..1128,1168..1170,1180..1182, 1234..1236,1255..1257,1261..1263) /gene="LOC121359931" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1426..2733 /gene="LOC121359931" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1837..1839,1849..1851,1885..1896,1903..1905, 1927..1929,1936..1938,1948..1950,1960..1962) /gene="LOC121359931" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2041..2043,2047..2049,2287..2289,2701..2703) /gene="LOC121359931" /note="active site" /db_xref="CDD:240015" ORIGIN
ggctcggcgggggcgcagcgcggggattgttcgcgccgccgctcggggaagcggaacgcggggagcgctccccgccgcgcccccgctgcctcctcctcatcctcctcctcggccgccgccgcctcccgccccgccgcccccgtgtccgcgccggacccccaccccgccgccaatattcccgagatcaagcgctacgcggcggcggcggggccggcggcggggcccggggcgggcggcggggccggcggcgagagcagcgaggccgccaccgccgccatggaggcgctgggacccgggcccccgaccagccttttccagccgccccgtcgcccaggcctgggcactgttgggaaacccatccggctcctggccaaccacttccaggttcagatccccaagattgatgtctatcactatgatgtagatatcaaaccagagaaacgcccccgaagagtcaacagggaggtggtggacacgatggtgaggcacttcaagatgcagatatttggggatcggcagcctgggtacgatgggaagcggaacatgtacacggcacaccccttacccattggcagggacagagtggatatggaggttacacttccaggagaggggaaggaccagacattcaaggtttccattcagtgggtgtcagtcgtcagccttcagatgctgctggaagctctggcagggcacttgaatgaagttcctgaagattctgtacaggcactggatgtaatcacacggcaccttccctccatgaggtacacccctgtgggccgctcctttttctcccctcctgaaggttattaccaccccctgggagggggcagggaggtctggtttggcttccaccagtcagtccgtcctgccatgtggaacatgatgctcaacatcgatgtgtcagcaactgctttctatcgtgcccagccaatcattgagttcatgtgtgaggtcttggatatccagaacatcagtgaacaaagcaaacctctgacagactcccagcgtgtcaagtttaccaaagaaatcagaggtctaaaagtagaggtgacccattgtggccagatgaagagaaaatacagagtttgcaatgttacccggcgaccagccagccaccagacgttccctctgcagctggagaatgggcaggccatggagtgcacagtagctcagtattttaagcagaagtacagtctgcagctgaaataccctcacctgccctgtctccaagtgggacaggagcagaaacacacatacctgccactggaggtgtgtaacatcgtggctggccagaggtgcatcaagaagctcacagacaatcagacctcaaccatgataaaagcaacagccaggtctgccccagacaggcaggaggagatcagcagactggtgaagagtaacagtatggttggtgggcctgatccgtatctgaaggagtttggaattgttgtccataacgaaatgacagagctgacaggcagagttctgccagccccaatgctgcagtatggaggcaggaacaagactgtggccacaccaaaccaaggcgtgtgggacatgagagggaaacagttctatgctggcattgagattaaagtttgggctgttgcctgttttgctcctcaaaaacaatgcagggaagacttgctgaagagtttcacagaccagctgcgcaagatctccaaggacgccgggatgccgatccagggccagccctgcttctgcaagtacgcccagggtgcagacagcgtggagcccatgttcaaacacttaaagctgacttatgttggcctgcagctcatcgtggtgattctgccagggaagacgcctgtgtacgctgaagtcaagcgggttggagatactctgctaggcatggccacacagtgtgttcaggtaaagaacgtggtcaaaacctctccacaaacgctgtccaacctgtgtctgaagatcaatgccaagcttggaggaatcaacaatgtgctggtacctcatcaaaggccctcggtgttccagcagccagtgatctttctgggagcagatgtcactcaccctcccgccggggacgggaagaagccgtccatcgcggccgtggtgggcagcatggacgggcaccccagccgctactgcgccacggtgcgcgtgcagacctcgcgccaggagacctcccaggagctgctctacagccaggaggtgatccaggacctgaccaacatggtgagggagctgttgatccagttctacaaatccactcgtttcaagcccacgaggatcatttactacagagggggagtgtcggaaggacagatgaaacaggtagcttggccagagctgattgccatccggaaggcctgcattagtttggaagaagattatagacctggaataacctacattgttgtgcagaaaaggcatcacaccaggctgttctgtgccgacaaaactgaaagggtgggtaaaagtggcaacgtaccagcaggcactactgtggacagcaccatcacacatccctctgaatttgacttttacctctgtagccatgcaggaattcagggaaccagccgtccctcccactaccaggtgttgtgggatgacaactgcttcacagcagacgagctgcagctgctgacgtaccagctgtgccacacgtacgtgcgctgcacccgctccgtctccatccccgcgcccgcctactacgccaggctggtggcctttcgggccaggtaccatcttgtggacaaggatcacgacagcgctgagggcagccacgtgtcggggcagagcaacggccgcgatccgcaggcgctggccaaggccgtgcagatccaccacgacacccagcacaccatgtatttcgcttgagagcccctgggaagatgaggcaaaacaactacccatgcagtcctgaagtgtttggaagcctcctgctctatccagggccgggggatttcggactgcccactaccagcagctccggacagtcgcactgaatctgttcttcactgcaacgtctgatgcaccaacacaattgagccatttgtttcattgttttctgtactagaaatccatagacttgtcttttctgatgcattggactgaatttttacctcaaagcgcaaaggctgatcatcctgaaatttttcaaggacttggcacgaaaggtttctatcaaatcttttgctagctgtggttttttcagttctcctcatcccatgagctgacggtgactgctgctctgtctccgtgccctgcttcgtgagtatgatgtgatggcaaaatgttttacccagctcgctgtaatccttctgtcgtgtggggccatagatttttttatggagattttagacttcactactgtaaatgccttttaacaaacataactttcacaggtattgcagttttttgtcagttttactaattatctttttaatctctgcagacttgggctgcaaagcaattgcactatactgcgagttaataggtggttcttgttctgtgaatgtgtaatataaccaatagtgatgcctgtcagtagattttaatgataatggttataaataatactgccatggtatcgtaacaagtactgaaccatcatttcccccctctaaaaatgataaaacaaaaaaaaaatttagcttttaggtattttgcaaacttttacaaaagtgcccactttatgctgctgtgtggtttgataaatctaagtgattttaaaacttttttctcatagaaggtttaactttggcaataaatctttgttttttaagcccccccaaacagtgtaattttctagctgaggattgtgcatgagtttaaccaacattctcgtgtcgttttctgaacacacaatttggcagtttctgaaacaaattagaaaagacacatttccatgctttttttaagaattatttttaactgttttatattcactgttggtgtcctgtctacaacattttttataagcttggaaactgggtgttccgtgtaggaaaggccaacgtgtgcagttgaaatgtattgtgtgacaggcaacctgaggacttgtaccagcattttgaactgtttttttttcctgggaatctgggttgcccacacaattgcatttacagcatgttgaacccgtgtgagtctcaaatgctgattctgtcccagcctagaaattagggtttttaatctgcttggcttttttttcagctgcaacctgtaatccagaacagggaccttgtttccctggtgttcctgtaacccatgaacgtagtaatttaagactagattccttattgtatacctgagttagtgcagattaaagcttattcctaaactgaggaggagtttgagaagcccaaggattgcactgtggtctctgatacttgtgtggggtttgctgctaagttgtctgctgtcccaaagcttaggaaccagccccctccaaatttcagcaataggaaatgctgtttccttcagtctttaagcttgtaaataaatgaaagtttacatttctaaatgctgttgttttcagttgtaccagagtacactgaacatcttcaaccagttttataacctccttgccagtagtacgtctcataaattaagtttaacctcttttcatttctgttgaaaatgggactgaagtgaaccctgctcctggcatgtgccaggacaggtttagattgaaaaaacaaaaaagattcttttacgttttttaactttttttttaaagaatacctcacttgtgtaacaaaatcaggacatgtgggtgggagactgaccgctgcttttctcagtactcgttcagggagaagacacaaaaaccctttttagagtgaactctgactgacccaacacacacggagaactttggcaccttgaaaagcacctgagcacctgttggaggtggtaggatccaagatccctgatttgagtttgtgcactaggaatggggctggtttaacaagggtgcataaaaaatgaactttatcaccaattagttgtccagtgccaagcactcctagttgagactgagggaagggagagcctctccttggtttgcctgtgactggatatttgacctcagaccaggtggagcatcagcccctggtgagccctgggccagcacccgagcggggctggtgtgagcccaccccgggcacagggctggagttttggggggaaagcactgaagttcaggatccaagttgcagcagtgctgccctaggcaggtctgagcccaagtctggaggacttgaggacctgagtgagccctgtgggcctgagtgactcgttctgcatgtgtcaatcaatgggaagatgtgcattctgtagctgtagttttagggtgttttgatttttggtttttttgtttttttttttttataaataaagcctgttggccactgtttagctctgtggtgtgaaagattttaaatgtagcaaagttcaaagggttggggaagggggtggttgatatatatatatatttaaaaaatattaaaaaaaaggggggagggggcagaaatcctgttttccacccggttctgcttgctttgtccctgctgagctctgaacaagctctggcaatcccaagttagcctgtctccaccagtctggctcttgtattgctgggagttccccaggtgctccatccagagggagcagaggtcggtgcaggggctgtcctgtgtccaccctctgcccttgggatggggcaggaccatggatcagagctggcatctgacagccccgacccctttgtggatgtgctgtaggagttttcttgctcaatagcgagggagtgactctgctttcattttcagaaggcagggccagagggcattggatccatccccatcccgatccactgcgaggctctttccctgtgcactggaggaaagatcttgcactaaatatcacttacagattttcttagaccttgctattgacattttcatatttctatgtctagaggctgcaacttcaatgtaaaatgtttgcatttgttcagtttgacttctgatgtaattttttggtttatatattgttagacttgtaatgtttcaaatggtattttattaactttggactggatgtatgtctctagcaatacgaggtactttctaaactgtcctggggctcacagccccgtgtcgagataagatgctggtcgtgtacaattgcattgtatttttttttttttagcctgcagggatattttgtgttcatgtgtccaaaaataataataataataataaaaattggcattctcgtgccaaatgttctgtttttccttattgctgtccaataaatgcaatgtacagagtgagcaaccaatattgttgcctgtaaacaaatgtcttaaactatttaacttttaattaaaacttgtacacaacgtgt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]