LOCUS       XM_041476998            3008 bp    mRNA    linear   VRT 06-MAY-2021
DEFINITION  PREDICTED: Pyrgilauda ruficollis Meis homeobox 1 (MEIS1),
            transcript variant X1, mRNA.
ACCESSION   XM_041476998
VERSION     XM_041476998.1
DBLINK      BioProject: PRJNA703052
KEYWORDS    RefSeq.
SOURCE      Pyrgilauda ruficollis (rufous-necked snowfinch)
  ORGANISM  Pyrgilauda ruficollis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea;
            Passeridae; Pyrgilauda.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_024525489.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Pyrgilauda ruficollis Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.6
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3008
                     /organism="Pyrgilauda ruficollis"
                     /mol_type="mRNA"
                     /isolate="IOZ18807"
                     /db_xref="taxon:221976"
                     /chromosome="Unknown"
                     /sex="pooled male and female"
                     /tissue_type="blood"
                     /altitude="4200 m"
     gene            1..3008
                     /gene="MEIS1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 26 ESTs, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:121358626"
     CDS             233..1408
                     /gene="MEIS1"
                     /codon_start=1
                     /product="homeobox protein Meis1 isoform X1"
                     /protein_id="XP_041332932.1"
                     /db_xref="GeneID:121358626"
                     /translation="

MTCRHYDELPHYGGMEGVGIPTTMYGDPHGARPMQPVHHLNHGPPLHSHQYPHAAHANAMPPAMGASVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDDTASTRSGGTPGPSSGGHTSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGTPYNPDGQPMGGFVMDGQQHMGIRAPGPMSGMGMNMGMEGQWHYM"

     misc_feature    557..811
                     /gene="MEIS1"
                     /note="N-terminal of Homeobox Meis and PKNOX1; Region:
                     Meis_PKNOX_N; pfam16493"
                     /db_xref="CDD:435375"
     misc_feature    order(1067..1069,1196..1198,1205..1210,1217..1219)
                     /gene="MEIS1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    1106..1222
                     /gene="MEIS1"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
ORIGIN      

gtgaaataatattgaaacgtggctgacagagacgctgcaaaaaaagtttctttttttttcttttttttttccccccctcctttctggagtaggggcacaaagcggtgtcctgcagcgggaggatttatcagttgtacttgtaggctttaaacctgtgtatattgctgttttcttgattcttttactccccatcccggagctctcagggaagaggcaagctttctatacattaatgacatgcaggcattacgacgagctgccccactacggcggcatggagggggtgggcatccccaccaccatgtacggggacccccacggcgcccgccccatgcagcccgtgcaccacctgaaccacgggccgccgctgcactcgcaccagtacccgcacgccgcccacgccaacgccatgccccccgccatgggcgcctccgtcaacgacgccctcaagagagataaagatgccatctacggacaccccctgttccctcttttagcactgatttttgagaaatgtgaattagctacatgcacacccagggagcccggggtagcgggaggcgatgtttgctcctctgagtctttcaatgaagacatagcagtgttcgccaaacagatccgagcagagaaacccctcttttcctctaatcccgaactggataacttgatgattcaagccatacaagtattaaggtttcatctgttggaattagagaaggtacacgaattatgtgacaatttctgccaccggtatattagctgtttgaaaggaaaaatgcctatcgatttggtcatagacgatagagagggcggatcaaaatcggacagtgaagacataacaagatcagcaaatctaacggatcagccctcctggaacagagaccatgatgacacggcatcaacgcgctctgggggaacccctggaccctccagtggaggacacacatcacacagcggggacaacagcagtgagcaaggtgacggcttggacaacagtgtagcttcccccagcacaggtgatgatgatgatccagataaggacaaaaagcgacataaaaagcgtggcatctttcccaaagtagccacaaatatcatgagggcatggctgttccagcatctaacacacccttacccttcagaagagcagaaaaagcagttggcacaagacacagggctcactatacttcaagtgaacaattggtttattaatgctagaagaagaatagttcagcccatgatagaccagtccaatcgagcagtaagtcaaggaacaccctataaccccgacgggcagccgatgggaggtttcgtgatggacggccagcagcacatgggcatccgagcaccaggacctatgagtggaatgggcatgaatatgggcatggaggggcagtggcactacatgtaaccttcacctaggtaaccaatggcaaagccagggggaaggctgcaaagtatgccaggggattatgtgtctcggggtagtccaatgggtatgaatatgggacagccaagctatacgccgccccagatgcccccccatcctgctcagctgcgtcatggcccccccatgcatacctacattcctggacaccctcaccacccagcgatgatgatgcatggaggaccaccccaccctggaatgcccatgtcagcatcaagccccacaatgcttcataccggcgagccagcagtgagcggacaagtgatggacattcatgctcagtagcttaagggaaatacacgttgtctgcagcgatggtagatttcaaacattgtctttctgcaatgactatggagttcttggcgtcaactttggaccaagggacgttccaattcttcacagggaccctgaaaagcaggaaaacaccaactgaagtcaacttctggggacatgctgaatacctatataagacattaagaaaacaaagagtgaaatattgtaaaatgctattatactgttatccatattacgttgtttcttatagattttttaaaaaaaatgtgaaatttttccacactatgtgtgttgtttccatagctcttcacttcctccagaagcctccttacattaaaaaagaagccttacacttatcctgcaaatgacagaaagggcttatttgcaggatttttagagcattaaaataactatgtcaggcagaagaatctttcttctatcctaggatttcagccatgcgcactctctctctcccccctccctctcctcctctgtccgtctttcttccctttctctgcctttctccccatctctctccctctctctctttctagcctggggcgtgaatttgcatgtctaattcatttactcaccatatttgaattggcctgaacagatgtaaatcgggaaggatgggaaaaactgaagtcatcaacaatgattaatcagctgttgcaggcagtgtcttaaggagactggtaggaggaagcatggaaacggaaaggcagtgtatttgaagcctaattgtcacatcagagcatccttgtccccatgcaacaaccaccaccttgtacatcacttcctgttttatgcagctcaaaacatggactgaagatttatttttaatatgttgactttctttctgggcaagacatcggtcatgtgtgcatttttttttccatagtcccatcatggagcatttatgtatacattgtaaataaattttgtgcaaaaaggactggaaaaatgatctgtattattgcaattttttgtaaaagtagcagtttggtatgagttggcatgcatacagatttactaagtgggataagctaattatacttttgttgtggttaaacaaatgcttgttgatagcctttttctatcaagaaaccaaggagctaattattattaataataatcattgcacactgagtcttagagtttctgattgaaacagtttggattgtataataactcaaagcccagttgtagtagtttgagtgcagtaatgaaatctgaatctaaaataaaaacaaattattttttgtca

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