2024-04-24 23:32:00, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_041472107 4305 bp mRNA linear VRT 06-MAY-2021 DEFINITION PREDICTED: Pyrgilauda ruficollis NRDE-2, necessary for RNA interference, domain containing (NRDE2), mRNA. ACCESSION XM_041472107 VERSION XM_041472107.1 DBLINK BioProject: PRJNA703052 KEYWORDS RefSeq. SOURCE Pyrgilauda ruficollis (rufous-necked snowfinch) ORGANISM Pyrgilauda ruficollis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Passeridae; Pyrgilauda. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024524155.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pyrgilauda ruficollis Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4305 /organism="Pyrgilauda ruficollis" /mol_type="mRNA" /isolate="IOZ18807" /db_xref="taxon:221976" /chromosome="Unknown" /sex="pooled male and female" /tissue_type="blood" /altitude="4200 m" gene 1..4305 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns" /db_xref="GeneID:121356055" CDS 125..3631 /gene="NRDE2" /codon_start=1 /product="nuclear exosome regulator NRDE2" /protein_id="XP_041328041.1" /db_xref="GeneID:121356055" /translation="
MALFPAFAGAAQPGEPPAGSSEGSTRELDWLSNPSFSAEDALLLHQRTTEAANLIPEKLPLLRTSSKSELSEESDTDESLKQTSKKRKKKKKKHHHNKKTKKKTKGDSSSSESEVDTKHIKDKGSGKSSEKEAATNLGKKASGVSSSHSIWLDDIQAPRADTFRIDKKPDPANWAYKSLYRGDIARYKRKGESCLGIDAKKQCITWDSSASKRKQAQSRPERYFTKNNVKMLNTDGILVCNKNSPSDPPAFIPVSQVETDDSSDTTEVNPLGIYDPSTTVWLQGKGCKSADNESVNTQQTSQEPGINMNSILMTKVEEYNKKVRENPRDINAWMEFISFQDELMRGPSPYASKGEQELRRKSLKLILEKKLAILERAIESNPSNVDLKLARLKLCTEFWEPPAVIKEWQKLIFLHPNNPEMWKKYLLFCQSQFTTFSVSKINSLYGKCFTTLAAVQDGSMVSHPLLPGTEEAMLAIFIQQCHFLRQAGHSEKAVSLFQALIDFTFFKPDSVKDLPTRGQVEFFEPFWDSGEPRIGEKGARGWKAWMHQQEKGGWVVLKPDDEDEEDIDEDQEIKDKTLPKWHIWLDVEYSREARHWLPWRPDKTKKETEEDCEDPERQVLFDDLGPSLIRLSNPKLQHQLLYSFLQFLGVPCTSKLFPSGLYTAMDENNIFDSVLYDDKPLTSVDFPLSGFNSIGHMDTMSRGRHQIGHYKEGEEFIQNVFHVLSQIFTGKEKSNLAICWLQYEISKVIHCLQAKKKKKLKAQGRKSKKLAKNFLKAPDNRNNLSLWKLYAYLEWLLGNTDDSRKVFDTALCTAGTGGLKSAQLCSLSLLYAQLEVELLESMEGAVMSRAVHILTKLTENGPYVPYSGQVLPVNVLKARKTYEHALQDCLSKTAVSDQDQVNDTDQLVNLVGCYALFQYLTVGIDAAVLIYTQASEKLEVSGSQKSENTGENFGILNFPTALEAVTLLHTNLLRFHMKISVYPLNPLREALTEALKRYPSNQSLWRSYIHIQRKSHSASKARRFFDSVTRSTNSLEPWLFAIQAEQMRKKLTEKVQRADVGEIHCTIPETGLTNRIVALFEHAVQSENGTHCPLLWRMYLNFMASLGKKEKSKGLFYKALQNCPWAKVLYMDAVEYFPEDLQETLDLMTEKELRVRVPMEELDLLLEI"
misc_feature 608..886 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(608..634,641..646,656..661,665..667,671..715, 722..730,734..742,764..772,782..787,791..796,803..823, 842..850,863..886) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1076..2071 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
gctcagcctccctgcccccagccgccatcttggagctgggcggaagaactaccgctcccagcgcgctcggcgccgcggcgccatcttgccgccggcagcgcgggcggggggcggcggccgagacatggcgctgttcccggccttcgccggcgccgcccagcccggggagccccccgccggcagctccgagggctccacgagagagttagactggcttagtaacccaagcttctctgcagaagatgcactattactgcaccagcgcactacagaagctgccaatctcattcctgaaaaattgccattattaaggacttcctcaaaatctgagttgtcagaggagagtgatacagatgagagtctgaaacagacgagtaagaaaaggaaaaagaaaaagaagaagcatcaccacaataagaagacaaaaaagaaaaccaaaggggattccagtagcagcgaatcagaggtggacactaagcacatcaaggacaaaggaagtggcaaaagtagtgaaaaggaagcagcaacaaatctaggtaagaaagcatcaggtgttagcagcagtcactctatttggctcgatgatatccaggcccccagagcagacaccttccggatagacaagaaaccagaccctgcaaactgggcctacaaatccttgtatcgtggggacatagcaaggtataaaaggaaaggagagtcctgtcttggcatagatgcaaagaaacagtgcataacttgggacagttctgcatcaaaaaggaagcaagcacagagtcgacctgagcgctactttacaaagaacaatgtgaagatgctgaacacagatgggattcttgtttgtaataaaaattctccgtctgatccacctgcttttataccagtctcccaagtggaaactgatgattcttctgacacaacagaagtaaatcctcttgggatttatgatccatcaaccacagtgtggctacaaggaaaagggtgcaagagtgcagacaatgagtctgtaaatacacagcaaacaagtcaagagcctgggataaacatgaactccattctaatgacaaaagtggaagaatataacaagaaagttagagaaaacccaagagatattaatgcttggatggaatttatttcctttcaggatgaattaatgagaggacctagcccttatgccagtaagggagagcaggaattaaggagaaaatcactcaagttaatcttggaaaagaaactggccattttagagagggcaattgaaagcaatccgagtaatgttgatctgaaacttgccaggctgaagctttgcacagaattctgggaaccaccagctgtgatcaaagaatggcagaagctaatttttttacatccaaataatccagagatgtggaagaaatacctcctgttctgtcaaagtcagttcactaccttttctgtttcaaagatcaacagtctctatggaaaatgttttacaacattggcagctgtacaggatggcagcatggtatcccatcctctgctgcctggcactgaagaagctatgctggccatatttattcagcaatgtcactttctgagacaagctggccattctgagaaagcagtgtctttgtttcaggctctgattgacttcaccttctttaaacctgacagtgtaaaagatctgccaacaagaggacaggtggaattctttgaacccttttgggatagtggagaaccacgaattggagaaaaaggagcaagaggctggaaagcatggatgcaccaacaagaaaagggtggctgggttgttcttaagcctgatgatgaggatgaggaagacatagatgaagatcaagaaataaaagataaaactcttcccaagtggcatatttggttggatgttgaatattcccgggaggcaaggcattggttaccttggaggccagacaaaaccaaaaaggaaactgaagaagattgtgaagatccagaaagacaggtgttatttgatgatcttggaccatctttaatccgtctttctaatccaaagcttcaacatcaactattgtactcttttttgcaattcctgggagttccatgtacaagtaaactctttccttccggtctctatactgccatggatgaaaataacatctttgacagtgtgctttatgatgataaacctctgacttccgttgattttccactttctggattcaacagtattggtcatatggatacaatgtcacgaggcagacatcagataggccactacaaagaaggagaggagttcatacagaatgtcttccatgttctgtcccagatatttacaggaaaggaaaaatctaacctggccatttgttggctacagtatgaaatatctaaggtaattcattgtctccaagcaaaaaagaaaaagaagctaaaggcacaagggaggaagagtaaaaagttggccaagaattttcttaaagcacctgacaaccgaaacaacctttctctctggaaactctatgcctacctagagtggctgcttggtaacacagatgattccaggaaggtgtttgacacagctctttgcacagcagggacaggaggattgaagagtgctcagctctgcagcctcagcctgctgtatgctcagctggaggtggagctgctggaaagtatggaaggagctgtcatgtcacgtgctgttcatatattgaccaaactgactgaaaatggaccatatgtgccctacagtggacaagtgttgcctgtgaatgtcttgaaagctcgtaaaacatatgagcatgcactgcaagattgcttaagtaaaacagcagtttctgatcaggatcaggtcaatgatactgatcagctggttaacctggttggttgttatgcactgtttcagtatttgactgttgggattgatgctgcagtattaatatatacgcaggcttcagaaaaacttgaagtttctggttcacagaaaagtgaaaatactggagagaattttggcattctaaattttcccactgctcttgaagctgtcacactgctgcatacaaatttactgagattccacatgaaaattagtgtttatcctttgaatcccctgcgagaggcactgacagaggctctgaaacggtatcctagcaaccagtctctttggaggtcatacatccacatccaaaggaagtctcacagtgccagcaaagcacgaagattttttgatagtgtcacaaggtctactaactctttagagccatggctgtttgcaatccaagcagagcagatgagaaaaaaactcacagagaaggtccagagggcagatgttggtgaaatacattgtactattcctgaaactggattaacaaatcggattgtagctctgtttgaacatgcagttcagagtgaaaatggtacccattgtccactgctatggagaatgtatttgaactttatggcttcactaggaaagaaagaaaaaagtaaaggattgttttataaagcccttcaaaactgtccttgggcaaaggtgctctatatggatgcagtagagtatttccctgaggatctgcaggagacgctcgatctcatgactgaaaaagaactgagagtgcgggtgcctatggaagagctggatctgctactggagatttaaaagaagactgtagcagagtggaggaagtgcagaagctgcttccaaagctaacaattagatccatctcttttcatacaggagctctgttgggacttgggtactatgtacttgacatttttttgttgttaatattttatataaattcctataaaaatggagttctactacctgcaagtattctggaatcaagcactgcattttgcccacaataatggatccatttctctgaagtattgcgggatcccacagaaggataggttctttaatagcctcctgttggaagttgcctgcatttcttactctattgtttgaaattacattccctagggttcagtagaggttcagtacatgccagctatggcttgatgagcagcacaggaaataaacatctgccaaatggatgctgcactgtcctccagctggcagacttcagtaatttccttcagcttgttatggctgtgcacatgcaactgccaagtcaaacagccattacatctgtacatatactgtaaaagctaaatttttgtttgagcaagcacgtattttggtatgttttgacagatgaccacttaaatgtaaatctttctgaaaaatatacctgaatatttgaaaattcaaaagtaacttgtttttttgtattaatttaatagaactgagtatattaaaaatgaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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